Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_H01
(919 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31671| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 46 4e-05
SB_51056| Best HMM Match : Neur_chan_LBD (HMM E-Value=4.3e-24) 44 2e-04
SB_38490| Best HMM Match : Neur_chan_LBD (HMM E-Value=2e-24) 42 5e-04
SB_52663| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.50006e-41) 39 0.005
SB_38489| Best HMM Match : Neur_chan_LBD (HMM E-Value=7.1e-24) 39 0.007
SB_37177| Best HMM Match : Neur_chan_LBD (HMM E-Value=5.3) 38 0.009
SB_17986| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.009
SB_49329| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 38 0.015
SB_43224| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.002) 37 0.026
SB_453| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.1e-08) 36 0.035
SB_37593| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 36 0.046
SB_59159| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.19
SB_31676| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 33 0.24
SB_73| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.32
SB_24418| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.32
SB_37942| Best HMM Match : Neur_chan_LBD (HMM E-Value=7.7e-05) 33 0.43
SB_53420| Best HMM Match : Hist_deacetyl (HMM E-Value=0) 31 0.99
SB_46592| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_37778| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_4972| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.92) 31 1.7
SB_54107| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.4e-35) 30 2.3
SB_50983| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 30 2.3
SB_59781| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 30 3.0
SB_14827| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.8) 29 4.0
SB_4912| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_50413| Best HMM Match : GRP (HMM E-Value=0.15) 29 4.0
SB_5179| Best HMM Match : Neur_chan_memb (HMM E-Value=3.5e-08) 29 5.3
SB_24860| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.0
SB_14966| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.00043) 29 7.0
SB_30491| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
>SB_31671| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 541
Score = 46.0 bits (104), Expect = 4e-05
Identities = 26/106 (24%), Positives = 53/106 (50%), Gaps = 6/106 (5%)
Frame = +3
Query: 126 MIDSLLATYDRDSPP----DSKIVVNLTLHLRHA-NIRESESTVRIXADLQMNWIDXRLS 290
++ LL Y +D+ P + + + L + LR ++ E + + I ++ W D L
Sbjct: 35 LLKYLLQNYSKDARPVLNVNDPVQLKLGIMLRQVIDLNERDQILTINVWIRQYWKDHLLK 94
Query: 291 WNAGEWG-CSTWLVSSERLWRPDVVLLNAGATTAGDYALRARVSNN 425
WN ++G + ++ +R+W+PDV+L N +T +L ++ N
Sbjct: 95 WNPDDFGGIKSINIAPDRVWKPDVLLYNRASTDLRFGSLNNKIDTN 140
Score = 43.6 bits (98), Expect = 2e-04
Identities = 22/88 (25%), Positives = 46/88 (52%), Gaps = 6/88 (6%)
Frame = +3
Query: 126 MIDSLLATYDRDSPP----DSKIVVNLTLHLRHA-NIRESESTVRIXADLQMNWIDXRLS 290
+++ L Y +D+ P D + + L + LR ++ E E + ++ W D L
Sbjct: 453 LLNYLFQNYSKDARPVLNVDDPVQLKLGIMLRQVIDLDEREQILTTNVWIRQYWADHFLQ 512
Query: 291 WNAGEW-GCSTWLVSSERLWRPDVVLLN 371
WN ++ G + +++ +++W+PDV+L N
Sbjct: 513 WNPDDFSGIKSIIIAPDKVWKPDVLLFN 540
>SB_51056| Best HMM Match : Neur_chan_LBD (HMM E-Value=4.3e-24)
Length = 373
Score = 43.6 bits (98), Expect = 2e-04
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Frame = +3
Query: 138 LLATYDRDSPP----DSKIVVNLTLHLRHA-NIRESESTVRIXADLQMNWIDXRLSWNAG 302
L TY++D P D + V L L L ++ + T+ + ++ W D RL WN
Sbjct: 20 LFRTYNKDVLPKETLDKGVPVRLDLALNQIIDVNKRAQTMTVVIWVRQYWRDPRLRWNVS 79
Query: 303 EW-GCSTWLVSSERLWRPDVVLLN 371
+ G ++ + RLW PD+ L N
Sbjct: 80 AYDGVDNIVIKASRLWLPDITLYN 103
>SB_38490| Best HMM Match : Neur_chan_LBD (HMM E-Value=2e-24)
Length = 478
Score = 42.3 bits (95), Expect = 5e-04
Identities = 18/37 (48%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Frame = +3
Query: 264 MNWIDXRLSWNAGEWG-CSTWLVSSERLWRPDVVLLN 371
+ W++ LSWNA E+G +T V +RLW PD+VL N
Sbjct: 77 VKWVNPSLSWNASEFGGVNTLHVEPDRLWVPDIVLYN 113
>SB_52663| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.50006e-41)
Length = 342
Score = 39.1 bits (87), Expect = 0.005
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = +3
Query: 192 LTLHLRHANIRESESTVRIXADLQMNWIDXRLSWNAGEW-GCSTWLVSSERLWRPDVVLL 368
LTL+ H ++E ++ L+ W D RL+WN E+ G + S+ +W PD+ +L
Sbjct: 22 LTLYDFHTQDEKNE-VIQTFLILEQMWNDTRLAWNETEYGGIKQMTLRSKLIWTPDISVL 80
Query: 369 NA 374
N+
Sbjct: 81 NS 82
>SB_38489| Best HMM Match : Neur_chan_LBD (HMM E-Value=7.1e-24)
Length = 445
Score = 38.7 bits (86), Expect = 0.007
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +3
Query: 258 LQMNWIDXRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNA 374
+ + W + LSWNA E+ G S VS +R W PD++L N+
Sbjct: 21 IAVRWTNPDLSWNASEYGGVSQIYVSPKRPWTPDILLYNS 60
>SB_37177| Best HMM Match : Neur_chan_LBD (HMM E-Value=5.3)
Length = 79
Score = 38.3 bits (85), Expect = 0.009
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = +3
Query: 237 TVRIXADLQMNWIDXRLSWNAGEWGCSTWLVSSER--LWRPDVVLLN 371
T+R+ ++ W D +L W+ ++G +V ER +W PDVVLLN
Sbjct: 32 TIRLQQIYELAWWDHKLQWDQSKYGGIKEVVLPERGVIWVPDVVLLN 78
>SB_17986| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 724
Score = 38.3 bits (85), Expect = 0.009
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = +3
Query: 237 TVRIXADLQMNWIDXRLSWNAGEWGCSTWLVSSER--LWRPDVVLLN 371
T+R+ ++ W D +L W+ ++G +V ER +W PDVVLLN
Sbjct: 32 TIRLQQIYELAWWDHKLQWDQSKYGGIKEVVLPERGVIWVPDVVLLN 78
>SB_49329| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 716
Score = 37.5 bits (83), Expect = 0.015
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Frame = +3
Query: 225 ESESTVRIXADLQMNWIDXRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAGATTAGD-- 395
E +++ ++ W + LSWNA E+ G S + ++LW+PD+ L N ++A
Sbjct: 104 EKYELLKLSLYVRQIWKNPLLSWNASEYGGISQVNLEPDQLWKPDIYLYNNADSSADGSL 163
Query: 396 YALRARV 416
Y +A++
Sbjct: 164 YGFKAKI 170
>SB_43224| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.002)
Length = 123
Score = 36.7 bits (81), Expect = 0.026
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +3
Query: 258 LQMNWIDXRLSWNAGEWGCSTWL-VSSERLWRPDVVLLN 371
++MNW + L WNA E+G L +S +W PD+VL N
Sbjct: 84 VRMNWNNHLLRWNASEYGGIDKLNISPTLMWLPDIVLHN 122
>SB_453| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.1e-08)
Length = 362
Score = 36.3 bits (80), Expect = 0.035
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +3
Query: 258 LQMNWIDXRLSWNAGEWG-CSTWLVSSERLWRPDVVLLN 371
+ + W D RL WN ++G +++ S +LW PD+ L N
Sbjct: 276 IDLYWTDFRLRWNHTKYGGIKSFVTPSRQLWLPDITLYN 314
>SB_37593| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 548
Score = 35.9 bits (79), Expect = 0.046
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = +3
Query: 201 HLRHANIRESESTVRIXADLQMNWIDXRLSWNAGEW-GCSTWLVSSERLWRPDVVLL-NA 374
HLR + V + ++ W + L+WN ++ G + ++ ++W PD++L NA
Sbjct: 106 HLRFDISEQQAQLVTVSVWIRQKWTNPMLAWNTSKYGGIESVNLNPAKVWIPDIILYNNA 165
Query: 375 GATTAG 392
T AG
Sbjct: 166 DETYAG 171
>SB_59159| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 686
Score = 33.9 bits (74), Expect = 0.19
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +3
Query: 210 HANIRESESTVRIXADLQMNWIDXRLSWNAGEW-GCSTWLVSSERLWRPDVVLLN 371
H + + TV L W D L+WN ++ G + V +W PD+VL N
Sbjct: 199 HQQLMGAPVTVACFLPLLQKWYDPWLTWNESDFGGMKSIKVDPSCVWVPDIVLYN 253
>SB_31676| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 422
Score = 33.5 bits (73), Expect = 0.24
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +3
Query: 258 LQMNWIDXRLSWNAGEWG-CSTWLVSSERLWRPDVVLLNAGAT 383
+++ W D L+WN ++G + V +W+PD++L N +T
Sbjct: 26 IRLYWKDHLLNWNPEDFGGVKSINVEPNNVWKPDILLYNPAST 68
>SB_73| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 930
Score = 33.1 bits (72), Expect = 0.32
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +3
Query: 219 IRESESTVRIXADLQMNWIDXRLSWNAGEWGCSTWL-VSSERLWRPDVVLLN 371
+ E L+M W D L WN ++G T + + + +W P V++ N
Sbjct: 534 VEEKNMVFTTNVRLRMGWKDAFLQWNPADYGGVTQINLEASDIWTPPVIIYN 585
>SB_24418| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 705
Score = 33.1 bits (72), Expect = 0.32
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Frame = +3
Query: 258 LQMNWIDXRLSWNAGEWGCSTWL-VSSERLWRPDVVLL-NAGATTAG---DYALRARVSN 422
+ + W++ L+W+ +G T + V+ +W+PD+VL N G G + RA + +
Sbjct: 64 INLRWVNPFLTWDPKMYGGLTSINVNPNMIWKPDIVLYHNIGFGETGAIYKFDTRATIMH 123
Query: 423 NG 428
NG
Sbjct: 124 NG 125
>SB_37942| Best HMM Match : Neur_chan_LBD (HMM E-Value=7.7e-05)
Length = 191
Score = 32.7 bits (71), Expect = 0.43
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +3
Query: 177 KIVVNLTLHLRHANIRESESTVRIXADLQMNWIDXRLSWNAGEW-GCSTWLVSSERLWRP 353
K +V LH + A + S S VR+ +++ W + L WN ++ G T V+ +W P
Sbjct: 69 KRIVRPVLHPQDA-VNVSFS-VRLNKLVEVKWENPFLVWNESDYGGVHTLHVTFNDVWVP 126
Query: 354 DVVLLN 371
D+VL N
Sbjct: 127 DIVLYN 132
>SB_53420| Best HMM Match : Hist_deacetyl (HMM E-Value=0)
Length = 360
Score = 31.5 bits (68), Expect = 0.99
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +3
Query: 318 TWLVSSERLWRPDVVLLNAGATTAGDYAL-RARVSNNG 428
TWL+ +WRPD+VL +AG D L R ++++NG
Sbjct: 272 TWLLD---MWRPDIVLYDAGVDPHVDDVLGRLKLTDNG 306
>SB_46592| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 648
Score = 31.1 bits (67), Expect = 1.3
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +3
Query: 270 WIDXRLSWNAGEWGCSTWLVSSERLWRPDVVLLNAG 377
W D L W+ ++ S + +W PDV L+N G
Sbjct: 404 WKDPSLQWDKAKYNLHKTRFSPKEIWVPDVSLINNG 439
>SB_37778| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 312
Score = 31.1 bits (67), Expect = 1.3
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +3
Query: 258 LQMNWIDXRLSWNAGEWGCSTWL-VSSERLWRPDVVLLN 371
+ + W + L+W+ +G T + V R+WRPD++L N
Sbjct: 75 IDLKWNNPLLTWDPTHFGNLTSINVDPLRVWRPDLILYN 113
>SB_4972| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.92)
Length = 88
Score = 30.7 bits (66), Expect = 1.7
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +3
Query: 270 WIDXRLSWNAGEWG-CSTWLVSSERLWRPDVVL 365
W + L+WN E+G T VS +W PD+VL
Sbjct: 53 WYNPLLTWNVTEYGGLKTINVSPTIIWLPDIVL 85
>SB_54107| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.4e-35)
Length = 479
Score = 30.3 bits (65), Expect = 2.3
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Frame = +3
Query: 270 WIDXRLSWNAGEWGCSTWL-VSSERLWRPDVVLL-NAGATTAG---DYALRARVSNNGSX 434
W + L WN +G + VS ++W PD+VL NA A+T G ++ R VS++G
Sbjct: 40 WYNPFLRWNETFYGGIKEINVSPLQVWTPDLVLYNNADASTDGSLENFKTRIIVSSDGKN 99
Query: 435 L 437
+
Sbjct: 100 M 100
>SB_50983| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 434
Score = 30.3 bits (65), Expect = 2.3
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +3
Query: 261 QMNWIDXRLSWNAGEWGCSTWL-VSSERLWRPDVVLLN 371
+ W D L W+ + G T + V LW+PD+VL N
Sbjct: 88 RQTWTDAWLKWDPAKHGGITAINVDPSFLWKPDMVLYN 125
>SB_59781| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 275
Score = 29.9 bits (64), Expect = 3.0
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Frame = +3
Query: 258 LQMNWIDXRLSWNAGEWGCSTWL-VSSERLWRPDVVLL-NAGATTAGD-YALRARVSNNG 428
+ + W + ++WN E+G + + LW+PD+ L NA + G Y A++ N
Sbjct: 44 MDVKWENPLVAWNKSEYGGIVQVNLDPSTLWKPDIYLYNNADSGYDGSLYGFTAKIKVNY 103
Query: 429 S 431
S
Sbjct: 104 S 104
>SB_14827| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.8)
Length = 156
Score = 29.5 bits (63), Expect = 4.0
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +3
Query: 270 WIDXRLSWNAGEWG-CSTWLVSSERLWRPDVVLLN 371
W + L+W+ E+G ST V+ +++W PD+ L N
Sbjct: 2 WRNEYLTWDPKEFGGISTINVNVDKVWVPDIYLYN 36
>SB_4912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 118
Score = 29.5 bits (63), Expect = 4.0
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = -3
Query: 242 HGGLGLTNVSMSQMQGQVDYDFGVGGGV 159
HG LG S+S + G+++ D+GVGGGV
Sbjct: 91 HGHLG----SVSMIMGKMNNDYGVGGGV 114
>SB_50413| Best HMM Match : GRP (HMM E-Value=0.15)
Length = 487
Score = 29.5 bits (63), Expect = 4.0
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = -3
Query: 242 HGGLGLTNVSMSQMQGQVDYDFGVGGGV 159
HG LG S+S + G+++ D+GVGGGV
Sbjct: 358 HGHLG----SVSMIMGKMNNDYGVGGGV 381
>SB_5179| Best HMM Match : Neur_chan_memb (HMM E-Value=3.5e-08)
Length = 428
Score = 29.1 bits (62), Expect = 5.3
Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Frame = +3
Query: 258 LQMNWIDXRLSWNAG-EWGCSTWLVSSERLWRPDVVLLN 371
+ W D L WN G V +W PD+ L+N
Sbjct: 28 IYQEWKDPNLKWNKSIAQGVEEIFVDPSDIWTPDIALMN 66
>SB_24860| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 137
Score = 28.7 bits (61), Expect = 7.0
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Frame = +3
Query: 150 YDRDSPP--DSKIVVNLTLHLRHAN---IRESESTVRIXADLQMNWIDXRLSWNAGEWGC 314
YD+ P D+ V L + + N I E V + ++ NW D RL+ N +
Sbjct: 14 YDKTERPGVDTGKPVELGVDIHFDNFGRIEEMNMEVDVFLYMRYNWKDPRLA-NFTDKTI 72
Query: 315 STWLVSSERLWRPDVVLLNAGA 380
+ E++WRPD NA A
Sbjct: 73 TFTRGDIEKVWRPDTYCSNAHA 94
>SB_14966| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.00043)
Length = 137
Score = 28.7 bits (61), Expect = 7.0
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Frame = +3
Query: 150 YDRDSPP--DSKIVVNLTLHLRHAN---IRESESTVRIXADLQMNWIDXRLSWNAGEWGC 314
YD+ P D+ V L + + N I E V + ++ NW D RL+ N +
Sbjct: 14 YDKTERPGVDTGKPVELGVDIHFDNFGRIEEMNMEVDVFLYMRYNWKDPRLA-NFTDKTI 72
Query: 315 STWLVSSERLWRPDVVLLNAGA 380
+ E++WRPD NA A
Sbjct: 73 TFTRGDIEKVWRPDTYCSNAHA 94
>SB_30491| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1516
Score = 28.3 bits (60), Expect = 9.2
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -3
Query: 227 LTNVSMSQMQGQVDYDFGVGGGVPIVRCEERVDHE 123
L+++S +G VD FGV +R +++D+E
Sbjct: 594 LSHISGGDKEGDVDLHFGVNSQTGAIRLNKKLDYE 628
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,300,177
Number of Sequences: 59808
Number of extensions: 324299
Number of successful extensions: 788
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2657535823
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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