Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_H01
(919 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 50 4e-08
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 48 1e-07
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 48 1e-07
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 48 2e-07
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 47 2e-07
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 46 6e-07
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 46 6e-07
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 46 6e-07
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 46 6e-07
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 46 6e-07
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 45 8e-07
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 44 3e-06
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 44 3e-06
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 43 4e-06
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 42 6e-06
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 40 3e-05
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 40 3e-05
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 40 4e-05
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 39 6e-05
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 39 7e-05
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 33 0.003
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 23 5.1
DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated... 22 9.0
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 49.6 bits (113), Expect = 4e-08
Identities = 35/109 (32%), Positives = 51/109 (46%), Gaps = 8/109 (7%)
Frame = +3
Query: 69 SLXAIASAAECENATSLSLMIDSLLATYDRDSPPDSK----IVVNLTLHLRHA---NIRE 227
++ I SA C + D LL+ Y+R P S +VV L L L N+++
Sbjct: 5 TIILILSARICHGNPDAKRLYDDLLSNYNRLIRPVSNNNDTVVVKLGLRLSQLIDLNLKD 64
Query: 228 SESTVRIXADLQMNWIDXRLSWNAGEWGCSTWL-VSSERLWRPDVVLLN 371
T + L+ W D + W+ E+G T L V SE +W PD+VL N
Sbjct: 65 QILTTNVW--LEHEWQDHKFQWDPAEYGGVTELYVPSEHIWLPDIVLYN 111
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 48.0 bits (109), Expect = 1e-07
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Frame = +3
Query: 216 NIRESESTVRIXADLQMNWIDXRLSWNAGEW-GCSTWLVSSERLWRPDVVLLN-AGATTA 389
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N A
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 152
Query: 390 GDYALRARVSNNGSXL 437
G Y V++NGS L
Sbjct: 153 GTYQTNVVVTHNGSCL 168
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 48.0 bits (109), Expect = 1e-07
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Frame = +3
Query: 216 NIRESESTVRIXADLQMNWIDXRLSWNAGEW-GCSTWLVSSERLWRPDVVLLN-AGATTA 389
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N A
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 152
Query: 390 GDYALRARVSNNGSXL 437
G Y V++NGS L
Sbjct: 153 GTYQTNVVVTHNGSCL 168
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 47.6 bits (108), Expect = 2e-07
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Frame = +3
Query: 216 NIRESESTVRIXADLQMNWIDXRLSWNAGEW-GCSTWLVSSERLWRPDVVLLN-AGATTA 389
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 390 GDYALRARVSNNGSXL 437
G Y V++NGS L
Sbjct: 85 GTYQTSVVVTHNGSCL 100
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 47.2 bits (107), Expect = 2e-07
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Frame = +3
Query: 99 CENATSLSLMIDS---LLATYDRDSPPDSKIV--VNLTLHLRHANIRESESTVRIXADLQ 263
C++ TS S + L YDRD P+ K ++ L ++H N+ E TV L+
Sbjct: 28 CKDITSTSALYRLKLYLFCDYDRDIIPEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLK 87
Query: 264 MNWIDXRLSWNAGEW-GCSTWLVSSERLWRPDVVL 365
+ W L+W + E+ ++ V S +W PD+V+
Sbjct: 88 LMWEQSHLTWKSSEFDSINSIRVKSYEIWVPDIVM 122
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 45.6 bits (103), Expect = 6e-07
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Frame = +3
Query: 216 NIRESESTVRIXADLQMNWIDXRLSWNAGEW-GCSTWLVSSERLWRPDVVLLN-AGATTA 389
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 390 GDYALRARVSNNGSXL 437
G Y V+++GS L
Sbjct: 85 GTYQTSVVVTHDGSCL 100
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 45.6 bits (103), Expect = 6e-07
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Frame = +3
Query: 216 NIRESESTVRIXADLQMNWIDXRLSWNAGEW-GCSTWLVSSERLWRPDVVLLN-AGATTA 389
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 390 GDYALRARVSNNGSXL 437
G Y V+++GS L
Sbjct: 85 GTYQTSVVVTHDGSCL 100
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 45.6 bits (103), Expect = 6e-07
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Frame = +3
Query: 216 NIRESESTVRIXADLQMNWIDXRLSWNAGEW-GCSTWLVSSERLWRPDVVLLN-AGATTA 389
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 390 GDYALRARVSNNGSXL 437
G Y V+++GS L
Sbjct: 85 GTYQTSVVVTHDGSCL 100
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 45.6 bits (103), Expect = 6e-07
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Frame = +3
Query: 216 NIRESESTVRIXADLQMNWIDXRLSWNAGEW-GCSTWLVSSERLWRPDVVLLN-AGATTA 389
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 390 GDYALRARVSNNGSXL 437
G Y V+++GS L
Sbjct: 85 GTYQTSVVVTHDGSCL 100
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 45.6 bits (103), Expect = 6e-07
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Frame = +3
Query: 216 NIRESESTVRIXADLQMNWIDXRLSWNAGEW-GCSTWLVSSERLWRPDVVLLN-AGATTA 389
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 390 GDYALRARVSNNGSXL 437
G Y V+++GS L
Sbjct: 85 GTYQTSVVVTHDGSCL 100
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 45.2 bits (102), Expect = 8e-07
Identities = 37/135 (27%), Positives = 61/135 (45%), Gaps = 9/135 (6%)
Frame = +3
Query: 60 RFSSLXAIASAAE--CENATSLSLMIDSLLATYDRDSPP----DSKIVVNLTLHLRHA-N 218
R++ + AIA AA + +++ LL TY+ P +V++ L L +
Sbjct: 3 RWTLMAAIALAASGLVNGGSHEKRLLNDLLDTYNVLERPVGNESEPLVLSFGLTLMQIID 62
Query: 219 IRESESTVRIXADLQMNWIDXRLSWNAGEWGCSTWL-VSSERLWRPDVVLLN-AGATTAG 392
+ E + L++ W D + WN ++G L + RLW+PDV++ N A G
Sbjct: 63 VDEKNQLLITNLWLKLEWNDVNMRWNVSDYGGVRDLRIPPHRLWKPDVLMYNSADEGFDG 122
Query: 393 DYALRARVSNNGSXL 437
Y V NNG+ L
Sbjct: 123 TYPTNVVVKNNGTCL 137
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 43.6 bits (98), Expect = 3e-06
Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 8/99 (8%)
Frame = +3
Query: 99 CENATSLSLMIDSLLATYDRDSPPDSKIVVNLTLHLR-------HANIRESESTVRIXAD 257
C + D LL+ Y++ P + LT+ ++ N++ T +
Sbjct: 19 CSGNPDAKRLYDDLLSNYNKLVRPVVNVTDALTVKIKLKLSQLIDVNLKNQIMTTNLW-- 76
Query: 258 LQMNWIDXRLSWNAGEWGCSTWL-VSSERLWRPDVVLLN 371
++ +W D +L W+ E+G L V S+ +WRPD+VL N
Sbjct: 77 VEQSWYDYKLKWDPKEYGGVEMLHVPSDHIWRPDIVLYN 115
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 43.6 bits (98), Expect = 3e-06
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Frame = +3
Query: 126 MIDSLLATYDRDSPP----DSKIVVNLTLHLRH---ANIRESESTVRIXADLQMNWIDXR 284
+ D LL+ Y+R P ++ V + L L N++ T + ++ W D +
Sbjct: 24 LYDDLLSNYNRLIRPVGNNSDRLTVKMGLRLSQLIDVNLKNQIMTTNVW--VEQEWNDYK 81
Query: 285 LSWNAGEWG-CSTWLVSSERLWRPDVVLLN 371
L WN ++G T V SE +W PD+VL N
Sbjct: 82 LKWNPDDYGGVDTLHVPSEHIWLPDIVLYN 111
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 42.7 bits (96), Expect = 4e-06
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Frame = +3
Query: 105 NATSLSLMIDSLLATYDRDSPPD---SKIVVNLTLHLRHAN-IRESESTVRIXADLQMNW 272
N +++S ++D+LL YD PD V + + +R I E + T + + +W
Sbjct: 2 NHSNISELLDNLLRGYDNSVRPDFGGPPATVEVDIMVRSMGPISEVDMTYSMDCYFRQSW 61
Query: 273 IDXRLSWNAGEWGCSTWLVSSERLWRPDVVLLN 371
+D RL++ G+ + + R+W+PD N
Sbjct: 62 VDRRLAFQGGKETLALSISMLARIWKPDTYFYN 94
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 42.3 bits (95), Expect = 6e-06
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 8/90 (8%)
Frame = +3
Query: 126 MIDSLLATYDRDSPPDSKIVVNLTLHLR-------HANIRESESTVRIXADLQMNWIDXR 284
+ D LL+ Y+R P LT+ L N++ T + ++ W D +
Sbjct: 37 LYDDLLSNYNRLIRPVMNNTETLTVQLGLKLSQLIEMNLKNQVMTTNVW--VEQRWNDYK 94
Query: 285 LSWNAGEWGCSTWL-VSSERLWRPDVVLLN 371
L WN E+G L V SE +W PD+VL N
Sbjct: 95 LKWNPEEYGGVEMLYVPSENIWLPDIVLYN 124
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 39.9 bits (89), Expect = 3e-05
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = +3
Query: 177 KIVVNLTL-HLRHANIRESESTVRIXADLQMNWIDXRLSWNAGEWGCSTWL-VSSERLWR 350
++ + L L L N++ T + ++ +W D +L W E+G L V S+ +WR
Sbjct: 55 RVCIKLKLSQLIDVNLKNQIMTTNLW--VEQSWYDYKLRWEPKEYGGVKMLHVPSDHIWR 112
Query: 351 PDVVLLN 371
PD+VL N
Sbjct: 113 PDIVLYN 119
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 39.9 bits (89), Expect = 3e-05
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = +3
Query: 177 KIVVNLTL-HLRHANIRESESTVRIXADLQMNWIDXRLSWNAGEWGCSTWL-VSSERLWR 350
++ + L L L N++ T + ++ +W D +L W E+G L V S+ +WR
Sbjct: 55 RVCIKLKLSQLIDVNLKNQIMTTNLW--VEQSWYDYKLRWEPKEYGGVKMLHVPSDHIWR 112
Query: 351 PDVVLLN 371
PD+VL N
Sbjct: 113 PDIVLYN 119
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 39.5 bits (88), Expect = 4e-05
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Frame = +3
Query: 177 KIVVNLTL-HLRHANIRESESTVRIXADLQMNWIDXRLSWNAGEW-GCSTWLVSSERLWR 350
K+ VN L ++ N+ E ++ L+ W D +L W+ ++ G + +++W+
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYGGIGVLRLPPDKVWK 110
Query: 351 PDVVLLNAGATTAGDYALR 407
PD+VL N G+Y +R
Sbjct: 111 PDIVLFN---NADGNYEVR 126
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 39.1 bits (87), Expect = 6e-05
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = +3
Query: 180 IVVNLTLHLRHANIRESESTVRIXADLQMNWIDXRLSWNAGEW-GCSTWLVSSERLWRPD 356
+V L+LH ++ E + + W D L WNA E+ G V R+WRPD
Sbjct: 33 VVFGLSLH-HIIDVDEKNQILTTNCWVTQIWTDHHLKWNASEFAGIRVIRVPYNRVWRPD 91
Query: 357 VVLLN 371
+L N
Sbjct: 92 TILYN 96
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 38.7 bits (86), Expect = 7e-05
Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 5/100 (5%)
Frame = +3
Query: 102 ENATSLSLMIDSLLATYDRDSPPDS--KIVVNLTLHL--RHANIRESESTVRIXADLQMN 269
++ T+L + L YD + P S +I N+T+ L + + S + + + + +
Sbjct: 39 DHPTTLLKLKRYLFCEYDPNVRPISSHQIANNVTMQLLPKLMEFDDWTSVMELHSWMTLM 98
Query: 270 WIDXRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAGATT 386
W D LSW ++ G + V S+ +W PD+ + N+G T
Sbjct: 99 WTDSHLSWKPSDFDGINYIYVKSDDIWVPDISVYNSGDMT 138
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 33.5 bits (73), Expect = 0.003
Identities = 21/91 (23%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Frame = +3
Query: 114 SLSLMIDSLLATYDRDSPPD----SKIVVNLTLHLRHAN-IRESESTVRIXADLQMNWID 278
++++++++LL Y+ + P + VV + +R + E + + + +W D
Sbjct: 36 NITMVLENLLMNYENNQLPTHGKGTPTVVKTNILIRSMGPVSELDMDYSMDCYFRQSWRD 95
Query: 279 XRLSWNAGEWGCSTWLVSSERLWRPDVVLLN 371
RLS+ S + ER+WRPD N
Sbjct: 96 SRLSFLGPIKSLSLSIKMLERIWRPDTYFYN 126
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 22.6 bits (46), Expect = 5.1
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -3
Query: 323 PSAAAPLPCVPTQS 282
PSA AP+P +P S
Sbjct: 411 PSAGAPMPPIPNMS 424
>DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 391
Score = 21.8 bits (44), Expect = 9.0
Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Frame = +3
Query: 180 IVVNLTLHLRHAN-IRESESTVRIXADLQMNWIDXRLS-----WNAGEWGCSTWLVSSER 341
++V+ + + N I + R+ ++ +WI+ RL + G+ + +
Sbjct: 11 VLVDFNIFVADINSINVEDMDFRVDMFVRQSWIESRLDMPDYIFEEGDDYVTLPPEFFDS 70
Query: 342 LWRPDVVLLNA 374
LW+PD LNA
Sbjct: 71 LWQPDPYFLNA 81
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,424
Number of Sequences: 438
Number of extensions: 2882
Number of successful extensions: 41
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29871933
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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