Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_G20
(858 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical pr... 97 2e-20
AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical ... 85 6e-17
AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical ... 62 6e-10
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ... 55 7e-08
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans... 53 3e-07
AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical ... 53 3e-07
U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical pr... 52 4e-07
AL110477-8|CAB76739.1| 1042|Caenorhabditis elegans Hypothetical ... 42 4e-04
AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical ... 37 0.016
AC090999-1|AAK26146.1| 390|Caenorhabditis elegans Hypothetical ... 30 1.8
U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical pr... 30 2.4
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr... 30 2.4
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 30 2.4
U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-... 29 5.6
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-... 29 5.6
U23452-5|AAK31546.1| 304|Caenorhabditis elegans Hypothetical pr... 29 5.6
Z82095-2|CAB05027.2| 602|Caenorhabditis elegans Hypothetical pr... 28 7.4
U29377-8|AAA68716.1| 218|Caenorhabditis elegans Hypothetical pr... 28 7.4
U23147-1|AAC46692.2| 674|Caenorhabditis elegans Hypothetical pr... 28 7.4
AL132860-5|CAB60515.1| 798|Caenorhabditis elegans Hypothetical ... 28 7.4
U97593-6|AAB52879.2| 925|Caenorhabditis elegans Prion-like-(q/n... 28 9.8
U97593-5|AAB52880.1| 1175|Caenorhabditis elegans Prion-like-(q/n... 28 9.8
U40030-6|AAA81135.3| 431|Caenorhabditis elegans Hypothetical pr... 28 9.8
U40030-5|AAR12976.2| 506|Caenorhabditis elegans Hypothetical pr... 28 9.8
AF125955-11|AAK71367.1| 178|Caenorhabditis elegans Hypothetical... 28 9.8
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 28 9.8
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 28 9.8
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 28 9.8
>U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical
protein F31A9.6 protein.
Length = 358
Score = 96.7 bits (230), Expect = 2e-20
Identities = 53/144 (36%), Positives = 83/144 (57%), Gaps = 2/144 (1%)
Frame = +2
Query: 236 LFFDIAKAFDKVWHNGLIYKLYNIGVPDRLVLIIRDYLSNRSFRYRVEGTRSRPRHVTAG 415
++ D +KAFD++ H+ L+ KL ++ L++ + ++LSNRSFR R+ T S + T G
Sbjct: 17 IYLDFSKAFDRLPHDLLLDKLVSLRKNKNLLIWVNEFLSNRSFRVRIGQTLSSRKFATCG 76
Query: 416 VPQGSALSPLLFSLYINDIPRSPETHLAL--FADDTAIYYSCRKKALLHRRLQTAATTMG 589
VPQG+ LSPLLF +Y+NDI +A FADDT +Y S K LQ+A +
Sbjct: 77 VPQGAVLSPLLFGIYVNDISSILPEKVACKQFADDTKLYAS-TPKTESENNLQSALDAVV 135
Query: 590 QWFRKWRIDINPTKSTAVLFKRGR 661
W + ++ +N +K+ V + R
Sbjct: 136 DWTKGSKLTLNQSKTVHVTVGKRR 159
>AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical
protein R11E3.3 protein.
Length = 931
Score = 85.0 bits (201), Expect = 6e-17
Identities = 55/176 (31%), Positives = 88/176 (50%), Gaps = 3/176 (1%)
Frame = +2
Query: 131 QFGFRARHSCVHQVHRLTEHILLGLNRRKPIPTGALF--FDIAKAFDKVWHNGLIYKLYN 304
Q GF+ HS V ++T I+ GLN + P P A+ D+ AFDKV L L
Sbjct: 436 QHGFKPEHSTTTAVIQVTNDIIGGLNMKNP-PERAIMACLDLRAAFDKVPTKKLCNDLME 494
Query: 305 I-GVPDRLVLIIRDYLSNRSFRYRVEGTRSRPRHVTAGVPQGSALSPLLFSLYINDIPRS 481
G+ ++ L + +YL R R + S+ + GVPQGS +SP LF+ Y+ D+P
Sbjct: 495 AQGIEPKIKLWLGNYLHKRLIRTSHDNHWSKWHTLLGGVPQGSVISPNLFTFYLKDMPTQ 554
Query: 482 PETHLALFADDTAIYYSCRKKALLHRRLQTAATTMGQWFRKWRIDINPTKSTAVLF 649
+T L +ADD +I +K ++Q + ++ ++ + I+ KST +F
Sbjct: 555 QDTMLISYADDMSIIARDKKIEKAAEKVQLHIDEIAKYLKERGMSISAEKSTVTVF 610
>AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical
protein C44B12.7 protein.
Length = 389
Score = 61.7 bits (143), Expect = 6e-10
Identities = 34/94 (36%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Frame = +2
Query: 254 KAFDKVWHNGLIYKLYNIGVPDRLVLIIRDYLSNRSFRYRVEGTRSRPRH-VTAGVPQGS 430
KAFD+V H+ L+ KL++ G+ D+LS+R+F +V H +++GVP+GS
Sbjct: 2 KAFDQVNHSLLLQKLHDFGINPLFCNWFHDFLSSRTFSVKVNNHIDPNIHPISSGVPKGS 61
Query: 431 ALSPLLFSLYINDIPRS--PETHLALFADDTAIY 526
P LF ++IN + S P + FADD +Y
Sbjct: 62 VSGPFLFLIFINSLLLSVPPSISCSAFADDLKVY 95
>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
protein F21E9.1 protein.
Length = 1170
Score = 54.8 bits (126), Expect = 7e-08
Identities = 39/134 (29%), Positives = 69/134 (51%), Gaps = 3/134 (2%)
Frame = +2
Query: 293 KLYNIGVPDRLVLIIRDYLSNRSFRYRVEGTRSRPRH-VTAGVPQGSALSPLLFSLYIND 469
KL G+ +++L NR+F ++ S+ + +++GVPQGS PLLF L+IN+
Sbjct: 839 KLAKFGLDSLTCSWYKEFLENRTFSVKINKFVSKNSYPISSGVPQGSVSGPLLFILFINN 898
Query: 470 --IPRSPETHLALFADDTAIYYSCRKKALLHRRLQTAATTMGQWFRKWRIDINPTKSTAV 643
I +P +++ FADD I+++ +Q + + W + + + PTKS A+
Sbjct: 899 LLIDLAPTINISCFADDVKIFHTD------PTIIQNSIDIIVSWSKLNELPLAPTKS-AL 951
Query: 644 LFKRGRPPNTTLSI 685
L R N + S+
Sbjct: 952 LALGTRNKNQSYSV 965
>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
transcriptase protein.
Length = 1066
Score = 52.8 bits (121), Expect = 3e-07
Identities = 37/117 (31%), Positives = 52/117 (44%)
Frame = +2
Query: 128 EQFGFRARHSCVHQVHRLTEHILLGLNRRKPIPTGALFFDIAKAFDKVWHNGLIYKLYNI 307
EQ GFR S + +H L LL + R IP +F D KAFD V H + L
Sbjct: 655 EQAGFRRSFSTIDHIHSLQR--LLEVGREYQIPLTLVFIDFKKAFDSVEHQAIWKSLDEQ 712
Query: 308 GVPDRLVLIIRDYLSNRSFRYRVEGTRSRPRHVTAGVPQGSALSPLLFSLYINDIPR 478
G + ++++ N + + R VT GV QG +SP LFS + + R
Sbjct: 713 GADGAYIDLLKECYKNCTTNF-TPFHRPVAVPVTKGVRQGDPISPNLFSACLEHVFR 768
>AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical
protein K10F12.5 protein.
Length = 805
Score = 52.8 bits (121), Expect = 3e-07
Identities = 37/117 (31%), Positives = 52/117 (44%)
Frame = +2
Query: 128 EQFGFRARHSCVHQVHRLTEHILLGLNRRKPIPTGALFFDIAKAFDKVWHNGLIYKLYNI 307
EQ GFR S + +H L LL + R IP +F D KAFD V H + L
Sbjct: 394 EQAGFRRSFSTIDHIHSLQR--LLEVGREYQIPLTLVFIDFKKAFDSVEHQAIWKSLDEQ 451
Query: 308 GVPDRLVLIIRDYLSNRSFRYRVEGTRSRPRHVTAGVPQGSALSPLLFSLYINDIPR 478
G + ++++ N + + R VT GV QG +SP LFS + + R
Sbjct: 452 GADGAYIDLLKECYKNCTTNF-TPFHRPVAVPVTKGVRQGDPISPNLFSACLEHVFR 507
>U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical
protein F20B4.7 protein.
Length = 891
Score = 52.4 bits (120), Expect = 4e-07
Identities = 37/117 (31%), Positives = 52/117 (44%)
Frame = +2
Query: 128 EQFGFRARHSCVHQVHRLTEHILLGLNRRKPIPTGALFFDIAKAFDKVWHNGLIYKLYNI 307
EQ GFR S + +H L LL + R IP +F D KAFD V H + L
Sbjct: 484 EQAGFRRSFSTIDHIHSLQR--LLEVGREYQIPLTLVFIDFKKAFDTVEHQAIWKSLDEQ 541
Query: 308 GVPDRLVLIIRDYLSNRSFRYRVEGTRSRPRHVTAGVPQGSALSPLLFSLYINDIPR 478
G + ++++ N + + R VT GV QG +SP LFS + + R
Sbjct: 542 GADGAYIDLLKECYKNCTTNF-TPFHRPVAVPVTKGVRQGDPISPNLFSACLEHVFR 597
>AL110477-8|CAB76739.1| 1042|Caenorhabditis elegans Hypothetical
protein Y113G7B.12 protein.
Length = 1042
Score = 42.3 bits (95), Expect = 4e-04
Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 5/102 (4%)
Frame = +2
Query: 236 LFFDIAKAFDKVWHNGLIYKLYNIGVPDRLVLIIRDYLSNRSFRYRVEGTRSRPRH-VTA 412
+ F ++ AFDKV H LI KL + V L R +S ++F +V +H
Sbjct: 890 IHFKLSTAFDKVPHEFLISKLNDFNVHPTLRNWFRKLMSPKTFSVQVNDHLESEKHNCQI 949
Query: 413 GVPQGSALSPLLFSLYIN----DIPRSPETHLALFADDTAIY 526
G P+GS +F ++IN +IP + ++D IY
Sbjct: 950 GAPRGSESRQFMFLVFINSLLCEIPINISCSACAISEDLEIY 991
>AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical
protein Y32G9A.9 protein.
Length = 417
Score = 37.1 bits (82), Expect = 0.016
Identities = 24/81 (29%), Positives = 37/81 (45%)
Frame = +2
Query: 236 LFFDIAKAFDKVWHNGLIYKLYNIGVPDRLVLIIRDYLSNRSFRYRVEGTRSRPRHVTAG 415
+F D KAFD V H + L G + + ++++ N + + R VT G
Sbjct: 40 VFIDFKKAFDSVEHQAIWKSLDEQGADEAYIDLLKECYKNCTTNF-TPFLRPITVPVTKG 98
Query: 416 VPQGSALSPLLFSLYINDIPR 478
V QG +SP LFS + + R
Sbjct: 99 VRQGDPISPNLFSACLEHVFR 119
>AC090999-1|AAK26146.1| 390|Caenorhabditis elegans Hypothetical
protein Y82E9BR.8 protein.
Length = 390
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -1
Query: 471 ISLIYKLNSNGERAEPCGTPAVT*RGRER 385
ISL S GER +PCGTP G E+
Sbjct: 50 ISLTNMPKSTGERTDPCGTPHTAFLGSEK 78
>U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical
protein K06A9.1c protein.
Length = 825
Score = 29.9 bits (64), Expect = 2.4
Identities = 30/134 (22%), Positives = 50/134 (37%)
Frame = +3
Query: 270 SGTTV*YTNCITLECQTGSCSSYETTCRTVRSDIESRERVPGPVTSQPESRKAPPSPRYY 449
+G+T+ + ++ T S S+ + T +S + S PG ++ P S PS +
Sbjct: 337 TGSTITISGSSSIIVSTVSGSTVSGSTGTSQSTLASSTATPGSSSTVPSSSSPQPSSQSP 396
Query: 450 SVCISTIYPGLRRPIWRSSPMTPPSTTRVGRRRCFIDDFRPQLPPWDSGSGSGASTLTPR 629
+ + P S M P S+T G + I +GS S T
Sbjct: 397 APNTGSTTPSQTSSQSPSPSMNPSSSTPTGSSQSTITPEGSTASSPTGSTGSTFSVATEV 456
Query: 630 KAQRCSSKGVALRT 671
+Q G +L T
Sbjct: 457 TSQSTVPSGSSLGT 470
>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
protein K06A9.1a protein.
Length = 1032
Score = 29.9 bits (64), Expect = 2.4
Identities = 30/134 (22%), Positives = 50/134 (37%)
Frame = +3
Query: 270 SGTTV*YTNCITLECQTGSCSSYETTCRTVRSDIESRERVPGPVTSQPESRKAPPSPRYY 449
+G+T+ + ++ T S S+ + T +S + S PG ++ P S PS +
Sbjct: 544 TGSTITISGSSSIIVSTVSGSTVSGSTGTSQSTLASSTATPGSSSTVPSSSSPQPSSQSP 603
Query: 450 SVCISTIYPGLRRPIWRSSPMTPPSTTRVGRRRCFIDDFRPQLPPWDSGSGSGASTLTPR 629
+ + P S M P S+T G + I +GS S T
Sbjct: 604 APNTGSTTPSQTSSQSPSPSMNPSSSTPTGSSQSTITPEGSTASSPTGSTGSTFSVATEV 663
Query: 630 KAQRCSSKGVALRT 671
+Q G +L T
Sbjct: 664 TSQSTVPSGSSLGT 677
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical
protein K06A9.1b protein.
Length = 2232
Score = 29.9 bits (64), Expect = 2.4
Identities = 30/134 (22%), Positives = 50/134 (37%)
Frame = +3
Query: 270 SGTTV*YTNCITLECQTGSCSSYETTCRTVRSDIESRERVPGPVTSQPESRKAPPSPRYY 449
+G+T+ + ++ T S S+ + T +S + S PG ++ P S PS +
Sbjct: 544 TGSTITISGSSSIIVSTVSGSTVSGSTGTSQSTLASSTATPGSSSTVPSSSSPQPSSQSP 603
Query: 450 SVCISTIYPGLRRPIWRSSPMTPPSTTRVGRRRCFIDDFRPQLPPWDSGSGSGASTLTPR 629
+ + P S M P S+T G + I +GS S T
Sbjct: 604 APNTGSTTPSQTSSQSPSPSMNPSSSTPTGSSQSTITPEGSTASSPTGSTGSTFSVATEV 663
Query: 630 KAQRCSSKGVALRT 671
+Q G +L T
Sbjct: 664 TSQSTVPSGSSLGT 677
>U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform b protein.
Length = 1169
Score = 28.7 bits (61), Expect = 5.6
Identities = 32/98 (32%), Positives = 43/98 (43%), Gaps = 6/98 (6%)
Frame = +3
Query: 312 CQTGS-CSSYETTCRT-VRSDIESRE--RVPGPVTSQP-ESRKAPPSPRYYSVCISTIYP 476
C GS C S C ++D+ + E VP P TSQP + PP+ V I T+ P
Sbjct: 306 CGKGSICDSVIPVCVCPAQTDLSNGECISVPAP-TSQPVQVMTPPPTLPPVQVPIQTLPP 364
Query: 477 GLRRPIWRSSPMT-PPSTTRVGRRRCFIDDFRPQLPPW 587
R P +T PP T V + F RP +P +
Sbjct: 365 QTRPPQLPPVQITQPPIQTPV--QPIFFQTTRPPMPTY 400
>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform a protein.
Length = 1876
Score = 28.7 bits (61), Expect = 5.6
Identities = 32/98 (32%), Positives = 43/98 (43%), Gaps = 6/98 (6%)
Frame = +3
Query: 312 CQTGS-CSSYETTCRT-VRSDIESRE--RVPGPVTSQP-ESRKAPPSPRYYSVCISTIYP 476
C GS C S C ++D+ + E VP P TSQP + PP+ V I T+ P
Sbjct: 403 CGKGSICDSVIPVCVCPAQTDLSNGECISVPAP-TSQPVQVMTPPPTLPPVQVPIQTLPP 461
Query: 477 GLRRPIWRSSPMT-PPSTTRVGRRRCFIDDFRPQLPPW 587
R P +T PP T V + F RP +P +
Sbjct: 462 QTRPPQLPPVQITQPPIQTPV--QPIFFQTTRPPMPTY 497
>U23452-5|AAK31546.1| 304|Caenorhabditis elegans Hypothetical
protein R07G3.6 protein.
Length = 304
Score = 28.7 bits (61), Expect = 5.6
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +3
Query: 396 PVTSQPESRKAPPSPRYYSVCISTIYPGLRRPIWRSSPMTPPSTTRVGR 542
P T+ + +P + +S +P LRR +S P PP+TT R
Sbjct: 131 PTTTTTPAPTTTTTPNFLEKSLSMFFPSLRRKP-QSIPTLPPTTTPTPR 178
>Z82095-2|CAB05027.2| 602|Caenorhabditis elegans Hypothetical
protein ZK849.4 protein.
Length = 602
Score = 28.3 bits (60), Expect = 7.4
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +2
Query: 611 IDINPTKSTAVLFKRGRPPNTTLSIPLPTXRVNNPPPP 724
I++ T V+ RPP + ++P N PPPP
Sbjct: 466 INVKVENPTPVIVDGARPPPSPPALPPALPNPNEPPPP 503
>U29377-8|AAA68716.1| 218|Caenorhabditis elegans Hypothetical
protein K05F1.9 protein.
Length = 218
Score = 28.3 bits (60), Expect = 7.4
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +3
Query: 396 PVTSQPESRKAPPSPRYYSVCISTIYPGLR-RPIWRSSPMTPPSTTRVGRRRCFIDDFRP 572
P T PE+ K YY +T+ + R +W+++ + G RR FID +P
Sbjct: 87 PATVIPENNKHY-FVVYYIKAANTVKEKIPVRDLWKAAASSE------GTRRVFIDFKKP 139
Query: 573 QLPPWDSGSG 602
+LPP ++ G
Sbjct: 140 ELPPTEAEDG 149
>U23147-1|AAC46692.2| 674|Caenorhabditis elegans Hypothetical
protein C18H9.8 protein.
Length = 674
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +2
Query: 662 PPNTTLSIPLPTXRVNNPPPPFXQSRCTXSPYRGP 766
PP+ + IP+P R PP P SR P R P
Sbjct: 106 PPSRSGMIPVPPSRSGGPPAPMPVSR-AGGPPRAP 139
>AL132860-5|CAB60515.1| 798|Caenorhabditis elegans Hypothetical
protein Y56A3A.6 protein.
Length = 798
Score = 28.3 bits (60), Expect = 7.4
Identities = 24/74 (32%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
Frame = +2
Query: 557 RRLQTAATTMGQWFRKWRIDINPTKSTAVLFKRGRP-PNTTLSIPLPTXRVNNPPPPFXQ 733
R+ Q AT +RK +PT L P P T I P +V +P PP +
Sbjct: 580 RKSQVTATQSPVSYRKIP-PTSPTPQRRPLNNTEVPSPVTYRKISAPVQKVTSPAPPAAR 638
Query: 734 SRCTXSPYRGPRRS 775
S T P RRS
Sbjct: 639 SVSTDQPPPANRRS 652
>U97593-6|AAB52879.2| 925|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
isoform c protein.
Length = 925
Score = 27.9 bits (59), Expect = 9.8
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +1
Query: 151 TLVRPSSAPPHGAHLTRAEQAETHSDRSPLLRYS 252
T RP+S+P H AE A H+++S + ++
Sbjct: 107 TAYRPASSPAPANHPVHAENAREHAEKSKVFTHN 140
>U97593-5|AAB52880.1| 1175|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
isoform a protein.
Length = 1175
Score = 27.9 bits (59), Expect = 9.8
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +1
Query: 151 TLVRPSSAPPHGAHLTRAEQAETHSDRSPLLRYS 252
T RP+S+P H AE A H+++S + ++
Sbjct: 226 TAYRPASSPAPANHPVHAENAREHAEKSKVFTHN 259
>U40030-6|AAA81135.3| 431|Caenorhabditis elegans Hypothetical
protein T13C2.3a protein.
Length = 431
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +3
Query: 318 TGSCSSYETTCRTVRSDIESRERVPGPVTSQPESRKAPPSP 440
T + +S TT T ++ + P T+ PE K PP P
Sbjct: 320 TSTTTSTTTTTTTTTTEEPTTTTTSAPTTTTPEPSKYPPLP 360
>U40030-5|AAR12976.2| 506|Caenorhabditis elegans Hypothetical
protein T13C2.3b protein.
Length = 506
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +3
Query: 318 TGSCSSYETTCRTVRSDIESRERVPGPVTSQPESRKAPPSP 440
T + +S TT T ++ + P T+ PE K PP P
Sbjct: 395 TSTTTSTTTTTTTTTTEEPTTTTTSAPTTTTPEPSKYPPLP 435
>AF125955-11|AAK71367.1| 178|Caenorhabditis elegans Hypothetical
protein F46E10.11 protein.
Length = 178
Score = 27.9 bits (59), Expect = 9.8
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Frame = +3
Query: 291 TNCITLECQTGSCSSYETTCRTVRSD---IESRERVPG-PVTSQPESRKAPPSP 440
+ C T C T +CS+ + C+ +RS+ I RVP T P + ++P +P
Sbjct: 58 SGCSTCNCNTATCST-SSYCQQIRSNWRCINGCCRVPNYEPTLPPTTTRSPVNP 110
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 27.9 bits (59), Expect = 9.8
Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
Frame = +2
Query: 650 KRGRPPNTTLSIPLPTXRVNNPPPPFXQSRCTXSPYRG--PRRSIFRRHPXQ*DDXPPPH 823
+ G PP P P +PPPP S P RG P S+ P Q PPP
Sbjct: 268 RTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSL---PPPQAGGSPPPA 324
Query: 824 QXGT 835
G+
Sbjct: 325 GTGS 328
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 27.9 bits (59), Expect = 9.8
Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
Frame = +2
Query: 650 KRGRPPNTTLSIPLPTXRVNNPPPPFXQSRCTXSPYRG--PRRSIFRRHPXQ*DDXPPPH 823
+ G PP P P +PPPP S P RG P S+ P Q PPP
Sbjct: 289 RTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSL---PPPQAGGSPPPA 345
Query: 824 QXGT 835
G+
Sbjct: 346 GTGS 349
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 27.9 bits (59), Expect = 9.8
Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
Frame = +2
Query: 650 KRGRPPNTTLSIPLPTXRVNNPPPPFXQSRCTXSPYRG--PRRSIFRRHPXQ*DDXPPPH 823
+ G PP P P +PPPP S P RG P S+ P Q PPP
Sbjct: 274 RTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSL---PPPQAGGSPPPA 330
Query: 824 QXGT 835
G+
Sbjct: 331 GTGS 334
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,508,441
Number of Sequences: 27780
Number of extensions: 498421
Number of successful extensions: 1678
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1662
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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