Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_G20
(858 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g13390.1 68417.m02092 proline-rich extensin-like family prote... 32 0.56
At2g20960.1 68415.m02479 expressed protein pEARLI 4 gene product... 31 0.98
At1g30810.1 68414.m03767 transcription factor jumonji (jmj) fami... 31 0.98
At1g10620.1 68414.m01204 protein kinase family protein contains ... 31 0.98
At5g06970.1 68418.m00789 expressed protein 30 2.3
At3g54590.1 68416.m06040 proline-rich extensin-like family prote... 30 2.3
At4g15160.1 68417.m02327 protease inhibitor/seed storage/lipid t... 29 3.0
At3g60920.1 68416.m06815 beige/BEACH domain-containing protein c... 29 3.0
At3g14790.1 68416.m01869 NAD-dependent epimerase/dehydratase fam... 29 3.0
At2g41360.1 68415.m05105 F-box family protein similar to SKP1 in... 29 3.0
At5g35190.1 68418.m04170 proline-rich extensin-like family prote... 29 4.0
At1g62440.1 68414.m07044 leucine-rich repeat family protein / ex... 29 4.0
At1g53500.1 68414.m06066 NAD-dependent epimerase/dehydratase fam... 29 4.0
At4g08410.1 68417.m01390 proline-rich extensin-like family prote... 29 5.2
At2g15880.1 68415.m01820 leucine-rich repeat family protein / ex... 29 5.2
At1g23720.1 68414.m02994 proline-rich extensin-like family prote... 29 5.2
At5g67070.1 68418.m08457 rapid alkalinization factor (RALF) fami... 28 6.9
At3g54580.1 68416.m06039 proline-rich extensin-like family prote... 28 6.9
At3g19430.1 68416.m02464 late embryogenesis abundant protein-rel... 28 6.9
At1g78570.1 68414.m09157 NAD-dependent epimerase/dehydratase fam... 28 6.9
At1g54215.1 68414.m06180 proline-rich family protein contains pr... 28 6.9
At5g06640.1 68418.m00750 proline-rich extensin-like family prote... 28 9.1
At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibit... 28 9.1
At1g59453.1 68414.m06679 transcription factor-related weak simil... 28 9.1
>At4g13390.1 68417.m02092 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 429
Score = 31.9 bits (69), Expect = 0.56
Identities = 19/54 (35%), Positives = 24/54 (44%)
Frame = +2
Query: 662 PPNTTLSIPLPTXRVNNPPPPFXQSRCTXSPYRGPRRSIFRRHPXQ*DDXPPPH 823
PP T S P P N+PPPP+ S PY P + + P PPP+
Sbjct: 134 PPLTYYS-PSPKVIYNSPPPPYIYSSPPPPPYYSPSPKVDYKSP------PPPY 180
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/54 (29%), Positives = 22/54 (40%)
Frame = +2
Query: 662 PPNTTLSIPLPTXRVNNPPPPFXQSRCTXSPYRGPRRSIFRRHPXQ*DDXPPPH 823
PP P PT +PPPP+ + PY P + + P PPP+
Sbjct: 349 PPPPPYYSPSPTVNYKSPPPPYVYNSPPPPPYYSPFPKVEYKSP------PPPY 396
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/54 (29%), Positives = 21/54 (38%)
Frame = +2
Query: 662 PPNTTLSIPLPTXRVNNPPPPFXQSRCTXSPYRGPRRSIFRRHPXQ*DDXPPPH 823
PP P P +PPPP+ + PY P I + P PPP+
Sbjct: 375 PPPPPYYSPFPKVEYKSPPPPYIYNSPPPPPYYSPSPKITYKSP------PPPY 422
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/54 (29%), Positives = 21/54 (38%)
Frame = +2
Query: 662 PPNTTLSIPLPTXRVNNPPPPFXQSRCTXSPYRGPRRSIFRRHPXQ*DDXPPPH 823
PP P P +PPPP+ S PY P + + P PPP+
Sbjct: 159 PPPPPYYSPSPKVDYKSPPPPYVYSSPPPPPYYSPSPKVEYKSP------PPPY 206
Score = 29.1 bits (62), Expect = 4.0
Identities = 18/65 (27%), Positives = 23/65 (35%), Gaps = 1/65 (1%)
Frame = +2
Query: 629 KSTAVLFKRGRPPNTTLSIPLPTXRVNNPPPPFXQSRCTXSPYR-GPRRSIFRRHPXQ*D 805
KS + PP P P +PPPP+ S PY P+ P
Sbjct: 226 KSPPAPYVYSSPPPPPYYSPSPKVNYKSPPPPYVYSSPPPPPYSPSPKVEFKSPPPPYIY 285
Query: 806 DXPPP 820
+ PPP
Sbjct: 286 NSPPP 290
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/44 (29%), Positives = 17/44 (38%)
Frame = +2
Query: 662 PPNTTLSIPLPTXRVNNPPPPFXQSRCTXSPYRGPRRSIFRRHP 793
PP P P +PPPP+ S PY P + + P
Sbjct: 185 PPPPPYYSPSPKVEYKSPPPPYVYSFPPPPPYYSPSPKVGYKSP 228
>At2g20960.1 68415.m02479 expressed protein pEARLI 4 gene product
[Arabidopsis thaliana] GI:871782
Length = 748
Score = 31.1 bits (67), Expect = 0.98
Identities = 22/81 (27%), Positives = 31/81 (38%)
Frame = +3
Query: 411 PESRKAPPSPRYYSVCISTIYPGLRRPIWRSSPMTPPSTTRVGRRRCFIDDFRPQLPPWD 590
PE+R P RY + P P TP + R R I D RP+ P +
Sbjct: 219 PETRPRTPDHRYATYDNRPRTPIHESAATERRPQTPETRPRTPEHRSAIPDTRPRTPIHE 278
Query: 591 SGSGSGASTLTPRKAQRCSSK 653
S + +G TP R + +
Sbjct: 279 S-AATGRRPQTPETRPRTAQR 298
>At1g30810.1 68414.m03767 transcription factor jumonji (jmj) family
protein / zinc finger (C5HC2 type) family protein
contains similarity to Swiss-Prot:P29375
retinoblastoma-binding protein 2 (RBBP-2) [Homo
sapiens]; contains Pfam domains PF02375: jmjN domain and
PF02373: jmjC domain; intron between exons 6 and 7 was
required to circumvent a frameshift. There could be an
underlying sequence error.
Length = 787
Score = 31.1 bits (67), Expect = 0.98
Identities = 17/77 (22%), Positives = 31/77 (40%)
Frame = +3
Query: 357 VRSDIESRERVPGPVTSQPESRKAPPSPRYYSVCISTIYPGLRRPIWRSSPMTPPSTTRV 536
++ D+ + P + + P SPR+ V + +RPI +P+ PS
Sbjct: 10 IKEDMSLKNHPPDKDKDKDTIMEQPSSPRHRKVVARWLPDEAQRPIINDAPVFTPSLEEF 69
Query: 537 GRRRCFIDDFRPQLPPW 587
+I+ RP P+
Sbjct: 70 VDPLAYIEKIRPLAEPY 86
>At1g10620.1 68414.m01204 protein kinase family protein contains
serine/threonine protein kinases active-site signature,
PROSITE:PS00108
Length = 718
Score = 31.1 bits (67), Expect = 0.98
Identities = 20/63 (31%), Positives = 27/63 (42%)
Frame = +3
Query: 396 PVTSQPESRKAPPSPRYYSVCISTIYPGLRRPIWRSSPMTPPSTTRVGRRRCFIDDFRPQ 575
P +QP + PP+P S+ P + P P PP +T G I +PQ
Sbjct: 68 PPPNQPPNTTPPPTPP------SSPPPSITPPPSPPQPQPPPQSTPTGDSPVVIPFPKPQ 121
Query: 576 LPP 584
LPP
Sbjct: 122 LPP 124
>At5g06970.1 68418.m00789 expressed protein
Length = 1101
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +3
Query: 411 PESRKAPP--SPRYYSVCISTIYPGLRRPIWRSSPMTPP 521
PES +PP +P V IS+ P + P W SP PP
Sbjct: 98 PESSGSPPKRAPPPIPVLISSSSPMVTNPEWCESPSAPP 136
>At3g54590.1 68416.m06040 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 743
Score = 29.9 bits (64), Expect = 2.3
Identities = 18/54 (33%), Positives = 24/54 (44%)
Frame = +2
Query: 662 PPNTTLSIPLPTXRVNNPPPPFXQSRCTXSPYRGPRRSIFRRHPXQ*DDXPPPH 823
PP T S P P +PPPP+ S PY P ++ + P PPP+
Sbjct: 405 PPPPTYS-PSPKVYYKSPPPPYVYS-SPPPPYYSPSPKVYYKSP------PPPY 450
>At4g15160.1 68417.m02327 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
SP|Q00451|PRF1_LYCES 36.4 kDa proline-rich protein
Lycopersicon esculentum, proline-rich cell wall protein
[Medicago sativa] GI:3818416; contains Pfam profile
PF00234 Protease inhibitor/seed storage/LTP family
Length = 428
Score = 29.5 bits (63), Expect = 3.0
Identities = 17/53 (32%), Positives = 22/53 (41%)
Frame = +2
Query: 662 PPNTTLSIPLPTXRVNNPPPPFXQSRCTXSPYRGPRRSIFRRHPXQ*DDXPPP 820
PP T+ P P V PPPP + +PY P + + P PPP
Sbjct: 98 PPPPTVKPP-PPPYVKPPPPPTVKPPPPPTPYTPPPPTPYTPPPPTVKPPPPP 149
>At3g60920.1 68416.m06815 beige/BEACH domain-containing protein
contains Pfam PF02138: Beige/BEACH domain; similar to LBA
isoform gamma (GI:10257405) [Mus musculus]; similar to
beige-like protein (CDC4L) - Homo sapiens; similar to
Neurobeachin: kinase A-anchoring, beige/Chediak-higashi
protein homolog implicated in neuronal membrane traffic
(AKAP550) (GI:11863541) [Drosophila melanogaster].
Length = 1928
Score = 29.5 bits (63), Expect = 3.0
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 6/93 (6%)
Frame = -3
Query: 709 IDAXSRERDAQRGVRRATPFEEHRCAFRGVNVDAPLPEPLSHGGSCGLK--SSMKQRLL- 539
I+ ER + RR+ E+ G+N PL E S +K S +K+R++
Sbjct: 1479 IEGNVGERKGENEERRSGSLEDAITLSTGINDHRPLSEQNMVQNSTEVKDLSELKERIVL 1538
Query: 538 ---PTRVVDGGVIGEERQMGLRRPGYIVDIQTE 449
T V GV+ Q+ RR +IVDI+ +
Sbjct: 1539 EISSTMVRPLGVVKGTFQITTRRINFIVDIRED 1571
>At3g14790.1 68416.m01869 NAD-dependent epimerase/dehydratase family
protein similar to dTDP-glucose 4,6-dehydratase from
Aneurinibacillus thermoaerophilus GI:16357461,
Saccharopolyspora spinosa GI:15077647, RmlB from
Leptospira borgpetersenii GI:4234803; contains Pfam
profile PF01370 NAD dependent epimerase/dehydratase
family
Length = 664
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = +2
Query: 245 DIAKAFDKVWHNGLIYKLYNIGVP-DRLVLIIRDYLS 352
D+A+AF+ V H G + +YNIG +R V+ + + +S
Sbjct: 230 DVAEAFEVVLHKGEVNHVYNIGTTRERRVIDVANDIS 266
>At2g41360.1 68415.m05105 F-box family protein similar to SKP1
interacting partner 6 [Arabidopsis thaliana]
GI:10716957; contains Pfam profile PF00646: F-box domain
Length = 373
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = -2
Query: 293 CISNRCARLYRTPSLYRRRGLL 228
C+S R L RTP LYR R LL
Sbjct: 36 CVSVRLRSLVRTPELYRMRSLL 57
>At5g35190.1 68418.m04170 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 328
Score = 29.1 bits (62), Expect = 4.0
Identities = 17/54 (31%), Positives = 22/54 (40%)
Frame = +2
Query: 662 PPNTTLSIPLPTXRVNNPPPPFXQSRCTXSPYRGPRRSIFRRHPXQ*DDXPPPH 823
PP S P P +PPPP+ S PY P + + P PPP+
Sbjct: 232 PPPPYFS-PSPKVDYKSPPPPYVYSSPPPPPYYSPSPEVSYKSP-----PPPPY 279
>At1g62440.1 68414.m07044 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 826
Score = 29.1 bits (62), Expect = 4.0
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +3
Query: 390 PGPVTSQPESRKAPPSPRY-YSVCISTIYPGLRRPIWRSSPMTPPST 527
P PV + P + ++PP P+Y + YP P ++ + PP T
Sbjct: 565 PPPVVNCPPTTQSPPPPKYEQTPSPREYYPSPSPPYYQYTSSPPPPT 611
Score = 28.7 bits (61), Expect = 5.2
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Frame = +3
Query: 390 PGPVTSQPESRKAPPSPRYYSVCISTIYPG--LRRPIWRSSPMTPP 521
P PV P + PP P YY+ I + P P+ +S P PP
Sbjct: 635 PPPVYYPPVTASPPPPPVYYTPVIQSPPPPPVYYSPVTQSPPPPPP 680
>At1g53500.1 68414.m06066 NAD-dependent epimerase/dehydratase family
protein low similarity to dTDP-D-glucose-4,6-dehydratase
from Aneurinibacillus thermoaerophilus GI:16357461,
Sphingomonas sp. GI:1314581; contains Pfam profile
PF01370: NAD dependent epimerase/dehydratase family;
putative NDP-rhamnose synthase (rhm2 gene) GI:31559258
Length = 667
Score = 29.1 bits (62), Expect = 4.0
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = +2
Query: 245 DIAKAFDKVWHNGLIYKLYNIGV--PDRLVLIIRD 343
D+A+AF+ V H G I +YN+G R++ + RD
Sbjct: 232 DVAEAFEVVLHKGEIGHVYNVGTKRERRVIDVARD 266
>At4g08410.1 68417.m01390 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965;
Length = 707
Score = 28.7 bits (61), Expect = 5.2
Identities = 21/69 (30%), Positives = 28/69 (40%)
Frame = +2
Query: 629 KSTAVLFKRGRPPNTTLSIPLPTXRVNNPPPPFXQSRCTXSPYRGPRRSIFRRHPXQ*DD 808
KS + G PP S P P +PPPP+ S PY P + + P
Sbjct: 274 KSPPPPYVYGSPPPPYYS-PSPKVDYKSPPPPYVYS-SPPPPYYSPSPKVNYKSP----- 326
Query: 809 XPPPHQXGT 835
PPP+ G+
Sbjct: 327 -PPPYVYGS 334
>At2g15880.1 68415.m01820 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 727
Score = 28.7 bits (61), Expect = 5.2
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +2
Query: 620 NPTKSTAVLFKRGRPPNTTLSIPLPTXRVNNPPPPFXQSRCTXSPYRGP 766
+P + V F+R PP S P P+ +++PPPP S P P
Sbjct: 480 DPYDQSPVKFRRSPPPPPVHSPPPPSP-IHSPPPPPVYSPPPPPPVYSP 527
>At1g23720.1 68414.m02994 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 895
Score = 28.7 bits (61), Expect = 5.2
Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
Frame = +2
Query: 623 PT-KSTAVLFKRGRPPNTTLSIPLPTXRVNNPPPPFXQSRCTXSPYRGPRRSIFRRHPXQ 799
PT KS + PP S P P +PPPP+ S PY P + + P
Sbjct: 704 PTYKSPPPPYVYSSPPPPYYS-PSPKPTYKSPPPPYVYSSPPPPPYYSPSPKVEYKSP-- 760
Query: 800 *DDXPPPH 823
PPP+
Sbjct: 761 ----PPPY 764
Score = 28.7 bits (61), Expect = 5.2
Identities = 17/54 (31%), Positives = 22/54 (40%)
Frame = +2
Query: 662 PPNTTLSIPLPTXRVNNPPPPFXQSRCTXSPYRGPRRSIFRRHPXQ*DDXPPPH 823
PP S P P +PPPP+ S PY P + + P PPP+
Sbjct: 769 PPPPYYS-PSPKVEYKSPPPPYVYSSPPPPPYYSPSPKVEYKSP------PPPY 815
Score = 28.7 bits (61), Expect = 5.2
Identities = 16/54 (29%), Positives = 21/54 (38%)
Frame = +2
Query: 662 PPNTTLSIPLPTXRVNNPPPPFXQSRCTXSPYRGPRRSIFRRHPXQ*DDXPPPH 823
PP T P P +PPPP+ + Y P I + P PPP+
Sbjct: 820 PPPPTYYSPSPKVEYKSPPPPYVYNSPPPPAYYSPSPKIEYKSP------PPPY 867
>At5g67070.1 68418.m08457 rapid alkalinization factor (RALF) family
protein similar to RALF precursor [Nicotiana tabacum]
GI:16566316
Length = 129
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -2
Query: 314 ALQCYTVCISNRCARLYRTPSLYRRRGLLSEWVSACSALVRC 189
AL V R R Y T + +R RG + + CS++ RC
Sbjct: 86 ALSANRVPCPPRSGRSYYTHNCFRARGPVHPYSRGCSSITRC 127
>At3g54580.1 68416.m06039 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 951
Score = 28.3 bits (60), Expect = 6.9
Identities = 19/64 (29%), Positives = 27/64 (42%)
Frame = +2
Query: 632 STAVLFKRGRPPNTTLSIPLPTXRVNNPPPPFXQSRCTXSPYRGPRRSIFRRHPXQ*DDX 811
S V +K PP + P P +PPPP+ S PY P ++ + P
Sbjct: 538 SPKVYYKSPPPPYYS---PSPKVYYKSPPPPYVYS-SPPPPYYSPSPKVYYKSP------ 587
Query: 812 PPPH 823
PPP+
Sbjct: 588 PPPY 591
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +2
Query: 686 PLPTXRVNNPPPPFXQSRCTXSPYRGPRRSIFRRHPXQ*DDXPPPH 823
P P + +PPPP+ S PY P ++ + P PPP+
Sbjct: 603 PSPKVQYKSPPPPYVYS-SPPPPYYSPSPKVYYKSP------PPPY 641
>At3g19430.1 68416.m02464 late embryogenesis abundant
protein-related / LEA protein-related similar to late
embryogenesis abundant protein [Picea glauca] GI:1350543
Length = 559
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 662 PPNTTLSIPLPTXRVNNPPP 721
PP T S+P PT V+ PPP
Sbjct: 101 PPTPTPSVPSPTPPVSPPPP 120
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 662 PPNTTLSIPLPTXRVNNPPP 721
PP T S+P PT V+ PPP
Sbjct: 119 PPTPTPSVPSPTPPVSPPPP 138
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 662 PPNTTLSIPLPTXRVNNPPP 721
PP T S+P PT V+ PPP
Sbjct: 137 PPTPTPSVPSPTPPVSPPPP 156
>At1g78570.1 68414.m09157 NAD-dependent epimerase/dehydratase family
protein similar to dTDP-glucose 4,6-dehydratase from
Aneurinibacillus thermoaerophilus GI:16357461, RmlB from
Leptospira borgpetersenii GI:4234803; contains Pfam
profile PF01370 NAD dependent epimerase/dehydratase
family
Length = 669
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +2
Query: 245 DIAKAFDKVWHNGLIYKLYNIG 310
D+A+AF+ V H G + +YNIG
Sbjct: 230 DVAEAFEVVLHKGEVGHVYNIG 251
>At1g54215.1 68414.m06180 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 169
Score = 28.3 bits (60), Expect = 6.9
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +2
Query: 662 PPNTTLSIPLPTXRVNNPPPPFXQSRCTXSPYRGPRRSIFRRHPXQ*DDXPPPHQXG 832
PP T + PL ++PPPP R P + P++++ RRHP P + G
Sbjct: 79 PPVTDMIKPL-----SSPPPPQPPPRSQPPP-KPPQKNLPRRHPPPPRSPEKPKRDG 129
>At5g06640.1 68418.m00750 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 689
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/54 (31%), Positives = 23/54 (42%)
Frame = +2
Query: 662 PPNTTLSIPLPTXRVNNPPPPFXQSRCTXSPYRGPRRSIFRRHPXQ*DDXPPPH 823
PP S P P +PPPP+ S PY P ++ + P PPP+
Sbjct: 287 PPPPYYS-PSPKVEYKSPPPPYVYS-SPPPPYYSPSPKVYYKSP------PPPY 332
>At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibitor
family protein low similarity to extensin [Volvox
carteri] GI:21992
Length = 312
Score = 27.9 bits (59), Expect = 9.1
Identities = 21/77 (27%), Positives = 31/77 (40%)
Frame = +3
Query: 396 PVTSQPESRKAPPSPRYYSVCISTIYPGLRRPIWRSSPMTPPSTTRVGRRRCFIDDFRPQ 575
P +S P +PPS S S++ P P+ SP +PP +
Sbjct: 29 PSSSSPSLSPSPPSSSPSSAPPSSLSPSSPPPL-SLSPSSPPPPPPSSSPLSSLSPSLSP 87
Query: 576 LPPWDSGSGSGASTLTP 626
PP S S + S+L+P
Sbjct: 88 SPPSSSPSSAPPSSLSP 104
>At1g59453.1 68414.m06679 transcription factor-related weak
similarity to TFIIIC Box B-binding subunit [Homo
sapiens] GI:442362
Length = 1729
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +3
Query: 531 RVGRRRCFIDDFRPQLPPWDSGSGS 605
RV CF+ D+ LP WDS S S
Sbjct: 649 RVKLLHCFLWDYFSSLPGWDSASSS 673
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,363,846
Number of Sequences: 28952
Number of extensions: 465518
Number of successful extensions: 2407
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2166
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1999652000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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