Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_G18
         (1040 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.066
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    32   0.12 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    31   0.27 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   2.5  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    27   5.8  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   5.8  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 33.1 bits (72), Expect = 0.066
 Identities = 17/52 (32%), Positives = 17/52 (32%)
 Frame = +3

Query: 351 PLXXKXPPPPXXKXXXGGXSPPPPPQXXFXXPPPPXFXKKAXXXXGGXQXPP 506
           P     P PP      G   PPPPP      PPPP     A    G     P
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAP 795



 Score = 31.9 bits (69), Expect = 0.15
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +3

Query: 348 APLXXKXPPPPXXKXXXGGXSPPPPP 425
           AP+    PPPP      G   PPPPP
Sbjct: 755 APIMGGPPPPPPPPGVAGAGPPPPPP 780



 Score = 26.2 bits (55), Expect = 7.6
 Identities = 18/62 (29%), Positives = 19/62 (30%), Gaps = 3/62 (4%)
 Frame = +3

Query: 354 LXXKXPPPPXXKXXXGGXSPPP---PPQXXFXXPPPPXFXKKAXXXXGGXQXPPXGGXXX 524
           L  K PPPP         +P P   PP       PPP          G    PP      
Sbjct: 727 LLLKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVS 786

Query: 525 AG 530
           AG
Sbjct: 787 AG 788


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 32.3 bits (70), Expect = 0.12
 Identities = 13/29 (44%), Positives = 13/29 (44%)
 Frame = +2

Query: 350 PPXXKXPPPPPXKXXXGGVXPPPPPXXXV 436
           PP    PPPPP         PPPPP   V
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPPGYV 33



 Score = 27.9 bits (59), Expect = 2.5
 Identities = 16/41 (39%), Positives = 17/41 (41%)
 Frame = +3

Query: 348 APLXXKXPPPPXXKXXXGGXSPPPPPQXXFXXPPPPXFXKK 470
           A L    PPPP         S PPP       PPPP + KK
Sbjct: 2   ASLPPGNPPPPPPPPGFEPPSQPPP-------PPPPGYVKK 35


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 31.1 bits (67), Expect = 0.27
 Identities = 13/29 (44%), Positives = 13/29 (44%)
 Frame = +3

Query: 369 PPPPXXKXXXGGXSPPPPPQXXFXXPPPP 455
           PPPP         S P PPQ     PPPP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPP 365



 Score = 28.7 bits (61), Expect = 1.4
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = +1

Query: 370 PPPPXXXXXXGGXPPPPPXKXXFXXPPPP 456
           PPPP       G  P PP       PPPP
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366



 Score = 27.9 bits (59), Expect = 2.5
 Identities = 12/32 (37%), Positives = 13/32 (40%)
 Frame = +1

Query: 361 KKXPPPPXXXXXXGGXPPPPPXKXXFXXPPPP 456
           K+ PPPP       G PP          PPPP
Sbjct: 309 KRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPP 340



 Score = 26.6 bits (56), Expect = 5.8
 Identities = 13/38 (34%), Positives = 14/38 (36%), Gaps = 2/38 (5%)
 Frame = +1

Query: 349 PPXXKK--XPPPPXXXXXXGGXPPPPPXKXXFXXPPPP 456
           PP  +    PPPP      G  PPP         PP P
Sbjct: 354 PPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAP 391


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 12/27 (44%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
 Frame = +1

Query: 349  PPXXKKXPPPPXXXXXXGGXP--PPPP 423
            PP     PPPP       G P  PPPP
Sbjct: 1708 PPPPMSVPPPPSAPPMPAGPPSAPPPP 1734


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 12/32 (37%), Positives = 12/32 (37%)
 Frame = +1

Query: 370 PPPPXXXXXXGGXPPPPPXKXXFXXPPPPXXK 465
           PPPP         PPPP         PPP  K
Sbjct: 312 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPPFK 343


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 17/51 (33%), Positives = 18/51 (35%)
 Frame = -1

Query: 503 GGLXXXXXXXCFFXKXGGGGXXKXXLXGGGGGXPPXXXFXXGGGGXFXXXG 351
           GGL        F  +   GG       GGG G PP      GG G F   G
Sbjct: 169 GGLASHALGNLFHHRGHNGGGFGGF--GGGSGGPPPGPGGFGGFGGFGGEG 217


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,827,883
Number of Sequences: 5004
Number of extensions: 28771
Number of successful extensions: 265
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 545231778
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)