Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_G16
(888 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic acetyl... 52 6e-09
EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic acetyl... 50 2e-08
EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic acetyl... 50 3e-08
EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic acetyl... 48 1e-07
EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic acetyl... 48 1e-07
AF025669-1|AAB81523.1| 243|Tribolium castaneum GABA receptor su... 44 2e-06
AM292361-1|CAL23173.2| 373|Tribolium castaneum gustatory recept... 26 0.34
AJ606487-1|CAE55183.1| 203|Tribolium castaneum Giant protein pr... 25 0.79
AM292326-1|CAL23138.2| 522|Tribolium castaneum gustatory recept... 22 5.6
U63132-1|AAB38392.1| 372|Tribolium castaneum decapentaplegic pr... 22 7.4
EF117815-1|ABO38438.1| 535|Tribolium castaneum cryptochrome 2 p... 22 7.4
>EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
3 protein.
Length = 311
Score = 52.0 bits (119), Expect = 6e-09
Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 2/124 (1%)
Frame = +2
Query: 173 ESPPDSKIVVNLTLHLRHANIRESESTVRMLADLQMNWIDKRLSWNAGEW-GCSTWLVSS 349
ES P ++ LTL + ++ E + A L + W D L WN E+ G ++
Sbjct: 25 ESEP-LEVKFGLTLQ-QIIDVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKDLRITP 82
Query: 350 ERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTC 526
+LW+PDV++ N+A G + V +NGS ++ + M + +P D Q C
Sbjct: 83 NKLWKPDVLMYNSADEGFDGTFQTNVVVKHNGSCLYVPPGIFKSTCKMDITWFPFDDQHC 142
Query: 527 TFKF 538
KF
Sbjct: 143 DMKF 146
>EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
2 protein.
Length = 311
Score = 50.4 bits (115), Expect = 2e-08
Identities = 34/124 (27%), Positives = 57/124 (45%), Gaps = 2/124 (1%)
Frame = +2
Query: 173 ESPPDSKIVVNLTLHLRHANIRESESTVRMLADLQMNWIDKRLSWNAGEW-GCSTWLVSS 349
ES P ++ LTL + ++ E + A L + W D L WN E+ G ++
Sbjct: 25 ESEP-LEVKFGLTLQ-QIIDVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKDLRITP 82
Query: 350 ERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTC 526
+LW+PDV++ N+A G + V +NGS ++ + + + +P D Q C
Sbjct: 83 NKLWKPDVLMYNSADEGFDGTFQTNVVVKHNGSCLYVPPGIFKSTCKIDITWFPFDDQHC 142
Query: 527 TFKF 538
KF
Sbjct: 143 DMKF 146
>EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
1 protein.
Length = 311
Score = 49.6 bits (113), Expect = 3e-08
Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 2/124 (1%)
Frame = +2
Query: 173 ESPPDSKIVVNLTLHLRHANIRESESTVRMLADLQMNWIDKRLSWNAGEW-GCSTWLVSS 349
ES P ++ LTL + ++ E + A L + W D L WN E+ G ++
Sbjct: 25 ESEP-LEVKFGLTLQ-QIIDVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKDLRITP 82
Query: 350 ERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTC 526
+LW+PDV++ N+A G + V + GS ++ + M + +P D Q C
Sbjct: 83 NKLWKPDVLMYNSADEGFDGTFQTNVVVKHGGSCLYVPPGIFKSTCKMDITWFPFDDQHC 142
Query: 527 TFKF 538
KF
Sbjct: 143 DMKF 146
>EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
5 protein.
Length = 311
Score = 48.0 bits (109), Expect = 1e-07
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
Frame = +2
Query: 272 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGS 445
L + W D L WN E+G L ++ +LW+PDV++ N+A G + V + GS
Sbjct: 56 LSLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNSADEGFDGTFQTNVVVKHGGS 115
Query: 446 VSWIKRLDISTPISMQLDNWPNDMQTCTFKF 538
++ + M + +P D Q C KF
Sbjct: 116 CLYVPPGIFKSTCKMDITWFPFDDQHCDMKF 146
>EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
4 protein.
Length = 311
Score = 48.0 bits (109), Expect = 1e-07
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
Frame = +2
Query: 272 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGS 445
L + W D L WN E+G L ++ +LW+PDV++ N+A G + V + GS
Sbjct: 56 LSLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNSADEGFDGTFQTNVVVKHGGS 115
Query: 446 VSWIKRLDISTPISMQLDNWPNDMQTCTFKF 538
++ + M + +P D Q C KF
Sbjct: 116 CLYVPPGIFKSTCKMDITWFPFDDQHCDMKF 146
>AF025669-1|AAB81523.1| 243|Tribolium castaneum GABA receptor
subunit protein.
Length = 243
Score = 43.6 bits (98), Expect = 2e-06
Identities = 39/146 (26%), Positives = 68/146 (46%), Gaps = 13/146 (8%)
Frame = +2
Query: 128 SLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LRHANIRESESTVRMLADLQMNWIDK 295
++S ++DS +YD+ P+ + V +T++ L +++ E + + + W D
Sbjct: 40 NISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFWTDP 99
Query: 296 RLSWNAGEWGCSTWLVSSE---RLWRPDVVLLNAA------ATTAGDYALRARVSNNGSV 448
RL++ G T V SE +W PD +N ATT+ ++ RV ++GS+
Sbjct: 100 RLAYGKRP-GVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFI---RVHHSGSI 155
Query: 449 SWIKRLDISTPISMQLDNWPNDMQTC 526
+ RL I+ M L P D Q C
Sbjct: 156 TRSIRLTITASCPMNLQYLPMDRQLC 181
>AM292361-1|CAL23173.2| 373|Tribolium castaneum gustatory receptor
candidate 40 protein.
Length = 373
Score = 26.2 bits (55), Expect = 0.34
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +2
Query: 413 ALRARVSNNGSVSWIKRLDISTPISMQLDNWPND 514
A+ + N + SW + ++ + + M LDNW ND
Sbjct: 272 AIEGIIFFNLAKSWPQLIEKWSRVEMALDNWKND 305
>AJ606487-1|CAE55183.1| 203|Tribolium castaneum Giant protein
protein.
Length = 203
Score = 25.0 bits (52), Expect = 0.79
Identities = 19/73 (26%), Positives = 29/73 (39%)
Frame = -1
Query: 252 VDSDSRMLACLKCRVRLTTILESGGDSRSYVARSESIMRDSDVAFSHSAALAIAQVRRNG 73
V S+S CR I + ++ V+ + +DS AF+ +AQV
Sbjct: 56 VSSNSYTPKIKSCRPFKAYIKDPLTLAQGLVSTEMLLKKDSSEAFNEFRTKILAQVHGTN 115
Query: 72 NKNNISRRHFMTT 34
N N + R TT
Sbjct: 116 NGTNKNMRRLSTT 128
>AM292326-1|CAL23138.2| 522|Tribolium castaneum gustatory receptor
candidate 5 protein.
Length = 522
Score = 22.2 bits (45), Expect = 5.6
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -1
Query: 543 NRNLNVQVCMSLGQLSNCIEI 481
N NL VC L LS C+++
Sbjct: 187 NSNLLKSVCADLCLLSECVDL 207
>U63132-1|AAB38392.1| 372|Tribolium castaneum decapentaplegic
protein protein.
Length = 372
Score = 21.8 bits (44), Expect = 7.4
Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Frame = -3
Query: 460 LYPG-DGAVIRYTGAESVVPGGGC 392
LY G DG+VI E VV G GC
Sbjct: 348 LYLGSDGSVILKNYKEMVVVGCGC 371
>EF117815-1|ABO38438.1| 535|Tribolium castaneum cryptochrome 2
protein.
Length = 535
Score = 21.8 bits (44), Expect = 7.4
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +1
Query: 259 DAGRSSNELDRQTTELERRGMGL 327
DAGR+S D+ RRG+ L
Sbjct: 7 DAGRASKGQDKHMVHWFRRGLRL 29
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,638
Number of Sequences: 336
Number of extensions: 3407
Number of successful extensions: 19
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24617054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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