Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_G14
         (857 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g54020.2 68414.m06155 myrosinase-associated protein, putative...    31   0.98 
At2g07020.1 68415.m00803 protein kinase family protein contains ...    30   1.7  
At5g14090.1 68418.m01648 hypothetical protein                          29   3.0  
At1g35510.1 68414.m04407 expressed protein contains Pfam PF03138...    29   4.0  
At5g36860.1 68418.m04416 Ulp1 protease family protein contains P...    29   5.2  
At5g03360.1 68418.m00289 DC1 domain-containing protein contains ...    29   5.2  
At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family prote...    29   5.2  
At3g24390.1 68416.m03063 Ulp1 protease family protein contains P...    29   5.2  
At1g64340.1 68414.m07291 hypothetical protein                          28   6.9  
At4g38560.1 68417.m05459 expressed protein                             28   9.1  
At1g14270.1 68414.m01692 CAAX amino terminal protease family pro...    28   9.1  

>At1g54020.2 68414.m06155 myrosinase-associated protein, putative
           strong similarity to myrosinase-associated proteins
           GI:1769968, GI:1769970, GI:1216389,GI:1216391 from
           [Brassica napus]; contains InterPro Entry IPR001087
           Lipolytic enzyme, G-D-S-L family
          Length = 372

 Score = 31.1 bits (67), Expect = 0.98
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +1

Query: 574 LACGSQAFIATLLFDPSMSALPIIAKQNSPSVGLFT 681
           + C S + +  LL  P +  L  I+ QN P+VGLFT
Sbjct: 1   MECSSVSVLGILLVFPLLHNLVTISGQNLPAVGLFT 36


>At2g07020.1 68415.m00803 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 700

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 367 DSSKLTTSDARPSVDWF*SNKSTHPITGQSSD 272
           DS     S  RPS+DWF  N+S +  +  SS+
Sbjct: 223 DSDLSFVSSDRPSMDWFEDNRSNYATSSSSSE 254


>At5g14090.1 68418.m01648 hypothetical protein 
          Length = 361

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 405 DASFKCLPYQLSKSKRAKAGLIQMFSTHRDCEST 506
           +AS +C+ Y+L  S+ AK G      T  DC+ST
Sbjct: 324 EASKRCIQYELRSSRSAKNG-EHWIKTDEDCKST 356


>At1g35510.1 68414.m04407 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown; previously annotated as
           'growth regulator protein -related'  based on similarity
           to axi 1 protein (GB:X80301) (GI:559920) from [Nicotiana
           tabacum], which, due to scienitific fraud was retracted.
           Retraction in: Schell J. EMBO J 1999 May 17;18(10):2908.
           PMID:10400497.
          Length = 568

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -1

Query: 632 ADIEGSKSNVAMNAWLPQASYSLW 561
           AD+ GS  NV M AW P+   S+W
Sbjct: 122 ADVNGSSHNVLMEAWKPRVK-SVW 144


>At5g36860.1 68418.m04416 Ulp1 protease family protein contains Pfam
            profile PF02902: Ulp1 protease family, C-terminal
            catalytic domain
          Length = 1204

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -3

Query: 678  EQSNAWRILLRNDRKSRHRRIKKQRRYERLAATSQLFPVVTFLAP 544
            E  NA  +  + ++KS  +++KKQ  YE+  A    F   T L P
Sbjct: 872  ESDNAAAVEAKEEKKSSPKKVKKQLVYEQDDAHPHGFKAKTVLVP 916


>At5g03360.1 68418.m00289 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 1610

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
 Frame = +3

Query: 15  PK-HDHAVRAFLR--PMRCDVLVFELTKKRAPWLILPVVICLSQRLSHACLSASRIKAIP 185
           PK H+H +  F R  P+ C V    LT  R P+ I P    ++ +   +C S  R+  I 
Sbjct: 274 PKWHEHTLSLFPRKTPLTCSVCA--LTHTRCPFYICPPCDFVAHQ---SCFSLPRVIRIS 328

Query: 186 RMAQYISF 209
           R    ISF
Sbjct: 329 RHHHRISF 336


>At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family protein
           beta-ketoacyl-CoA synthase - Simmondsia
           chinensis,PID:g1045614
          Length = 451

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 450 RAKAGLIQMFSTHRDCESTAYRSFSIK 530
           RAK  L+Q+  TH+  E T+Y+S  ++
Sbjct: 291 RAKYQLMQLVRTHKGMEDTSYKSIELR 317


>At3g24390.1 68416.m03063 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain; similar to At3g24380, At5g36840,
           At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
           At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
           At1g27780, At5g36850, At3g42730, At1g52020, At4g05280,
           At1g25886, At4g03300
          Length = 1139

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -3

Query: 678 EQSNAWRILLRNDRKSRHRRIKKQRRYERLAATSQLFPVVTFLAP 544
           E  NA  +  + ++KS  +++KKQ  YE+  A    F   T L P
Sbjct: 807 ESDNAAAVEAKEEKKSSPKKVKKQLVYEQDDAHPHGFKAKTVLVP 851


>At1g64340.1 68414.m07291 hypothetical protein
          Length = 265

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 492 DCESTAYRSFSIKSF*QEVPEKLPQGITGLWQPSVHS 602
           DCEST Y SF + SF +++   +      +  P + S
Sbjct: 124 DCESTLYDSFELNSFNRQLNSAISSSARSMSMPHLSS 160


>At4g38560.1 68417.m05459 expressed protein
          Length = 521

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +2

Query: 119 SYMLVSKIKPCMSQCKPY*GDTANGSIYQFWFLRSYSVTWITVVILEL 262
           SY + + +   + +     GD A+GS  Q    +SYS+  +  V+LEL
Sbjct: 341 SYKVRASVSSTLQKILDKHGDIASGSKLQSLRTKSYSLETLAAVVLEL 388


>At1g14270.1 68414.m01692 CAAX amino terminal protease family
           protein contains Pfam profile PF02517: CAAX amino
           terminal protease family
          Length = 353

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 105 LILPVVICLSQRLSHACLSASRIKAIPRMAQY 200
           ++  ++ CLSQ  S  CLS SR   +P+   Y
Sbjct: 14  MVSQIISCLSQSSSLLCLSDSRRLILPKTCTY 45


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,083,818
Number of Sequences: 28952
Number of extensions: 337220
Number of successful extensions: 657
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1999652000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)