Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_G10
(862 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 265 6e-72
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 261 1e-70
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 46 5e-06
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce... 29 1.1
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 29 1.1
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2... 27 3.4
SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact... 26 7.9
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 26 7.9
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 265 bits (649), Expect = 6e-72
Identities = 130/210 (61%), Positives = 156/210 (74%)
Frame = +1
Query: 94 VLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVV 273
VL ++D+ +LAA +H+G++N+ +ME YV+KRR+DG H+INL +TWEKLVLAAR +
Sbjct: 10 VLNATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIA 69
Query: 274 AIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLD 453
IENPADV VISSRP+G RAVLKFAAHTGAT IAGRFTPG FTN I +REPRL+IV D
Sbjct: 70 TIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTD 129
Query: 454 PAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLR 633
P D Q I EAS+VNIPVIALC+TDS L VD+AIP N K SIGL W+LLAREVLRLR
Sbjct: 130 PRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLR 189
Query: 634 GVLPR*PALGCCG*FVLLP*PEESEKDEQQ 723
G + R A PEE E++E+Q
Sbjct: 190 GNISRTTAWEVMPDLYFYRDPEEIEREEEQ 219
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 261 bits (639), Expect = 1e-70
Identities = 128/224 (57%), Positives = 162/224 (72%)
Frame = +1
Query: 82 GGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAA 261
G ++L +ED+ ++LAA H+G++N+ +M+ YV+KRR+DG H++NL +TWEKLVLAA
Sbjct: 5 GRPNILNATDEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAA 64
Query: 262 RAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLL 441
R + IENPADV V+S+R +G RAVLKFAAHTGAT IAGRFTPG FTN I +REPRL+
Sbjct: 65 RVIATIENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLI 124
Query: 442 IVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREV 621
+V DP D Q I EAS+VNIPVIALC+TDS L VDIAIP N K SIGL+W+LLAREV
Sbjct: 125 VVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREV 184
Query: 622 LRLRGVLPR*PALGCCG*FVLLP*PEESEKDEQQAKEQAVVPAK 753
LR+RG L R PEE E+ E++AK+ A A+
Sbjct: 185 LRVRGTLSRSAPWDVMPDLYFYRDPEEVER-EEEAKKAAAAAAE 227
>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
S2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 46.4 bits (105), Expect = 5e-06
Identities = 47/190 (24%), Positives = 82/190 (43%), Gaps = 27/190 (14%)
Frame = +1
Query: 127 MLAATTHLGAENV--NFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENPADVF 300
+L++ HLG N + ++Y +R +G H+I+L +T L A V +I +
Sbjct: 53 LLSSGAHLGHSTSIWNPYTQPFIYGKR-EGIHIISLDQTMVYLRRAISVVRSIAKENGII 111
Query: 301 VISSRPFGQR-AVLKFAAHTGATPIAGRFTPGAFTN--QIQA------------------ 417
+ GQ+ +V+ A I R+ PG TN ++Q
Sbjct: 112 LFIGTRNGQKDSVVAAAKRARGYHIFDRWLPGLLTNAREVQGKLGGSILCKDNRGKLIQT 171
Query: 418 ----AFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHS 585
++ P L+++L+P ++ EA ++P I + +TD+ R V IP N S
Sbjct: 172 DKKPSYVFPDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRC 231
Query: 586 IGLMWWLLAR 615
L+ LL+R
Sbjct: 232 TDLIAGLLSR 241
>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 335
Score = 28.7 bits (61), Expect = 1.1
Identities = 14/59 (23%), Positives = 29/59 (49%)
Frame = +1
Query: 217 VINLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPG 393
V+++R TW +LV+ + + + N ++ +I++ + V+ FA H PG
Sbjct: 89 VLSVRFTWNRLVVLIKGSIYVYNLKNMELINTLNTSKGNVIAFAVHENYVAYNSPTNPG 147
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 28.7 bits (61), Expect = 1.1
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Frame = +1
Query: 352 HTGATPIAGRFTPGAFTNQIQAAFR--EPRLLIVLDPAQDHQPI---TEASYVNIPVIAL 516
+ A P G T+ I A F+ +P + ++ D + T A + + L
Sbjct: 29 YVNAAPHLGHLYSLVLTDAI-ARFQNLKPDVSVISSTGTDEHGLKVQTVAQTEGVSPLQL 87
Query: 517 CNTDSPLRFVDIAIPCNTKSSHSI 588
C+ +S RF D+A+ NTK +H I
Sbjct: 88 CDRNSK-RFADLAVAANTKFTHFI 110
>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 474
Score = 27.1 bits (57), Expect = 3.4
Identities = 22/69 (31%), Positives = 31/69 (44%)
Frame = -2
Query: 480 SNGLMVLCRVQYNQETRFTECSLDLVSKSTWCETSRNRRSTGVRGKLQYSTLTEGP**DD 301
S GL L R + E F + +S + W T + + G+RG ++ EGP D
Sbjct: 169 SEGLEDLIRAE--AEKYFAKADCVCISDTYWLGTKKPVLTYGLRGVCYFNITVEGP-SAD 225
Query: 300 EHISGVLDG 274
H SGV G
Sbjct: 226 LH-SGVFGG 233
>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 648
Score = 25.8 bits (54), Expect = 7.9
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +2
Query: 614 VKC*GFVVCFPGDQRWDVVVDLFFYRDLKKVKRMNNKPR 730
VKC G VCF + + V FYR +K++K N+ +
Sbjct: 22 VKCSGGDVCFECQKYNENCVYRQFYRKIKRLKYNNDNSK 60
>SPBC887.09c |||leucine-rich repeat protein Sog2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 886
Score = 25.8 bits (54), Expect = 7.9
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = -3
Query: 665 HPSAGHRGSTPRSLSTSRANNHHIKPIEWEDLVLHGIAMSTNLSGESVLH 516
H AGH+ STP+ ST N + + ++ V HG +L+ + H
Sbjct: 250 HSPAGHQQSTPK--STLSKTNENSEGTLYDSNVAHGCTHPPSLNQLNKFH 297
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,553,780
Number of Sequences: 5004
Number of extensions: 77883
Number of successful extensions: 187
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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