Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_G10
         (862 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identi...   254   7e-68
At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identi...   244   5e-65
At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identi...   244   5e-65
At2g22340.1 68415.m02651 hypothetical protein                          33   0.32 
At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RP...    32   0.43 
At2g07020.1 68415.m00803 protein kinase family protein contains ...    30   2.3  
At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing ...    29   4.0  
At4g35540.1 68417.m05051 expressed protein transcription factor ...    29   5.3  
At2g34150.1 68415.m04180 expressed protein                             29   5.3  
At3g47080.1 68416.m05112 expressed protein                             28   7.0  
At1g11980.1 68414.m01384 ubiquitin family protein similar to Cha...    28   7.0  

>At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identical
           to laminin receptor-like protein GB:U01955 [Arabidopsis
           thaliana]; identical to cDNA laminin receptor homologue
           GI:16379
          Length = 298

 Score =  254 bits (621), Expect = 7e-68
 Identities = 124/221 (56%), Positives = 153/221 (69%), Gaps = 1/221 (0%)
 Frame = +1

Query: 97  LALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVA 276
           L+  E DV  M AA  HLG +N N+QME YV+KRR DG ++ NL +TWEKL +AAR +VA
Sbjct: 12  LSQKEADVRMMCAAEVHLGTKNCNYQMERYVFKRRNDGIYIFNLGKTWEKLQMAARVIVA 71

Query: 277 IENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDP 456
           IENP D+ V S+RP+GQRAVLKFA +TGA  IAGR TPG FTNQ+Q +F EPRLLI+ DP
Sbjct: 72  IENPQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSFSEPRLLILTDP 131

Query: 457 AQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRG 636
             DHQPI E +  NIP+IA C+TDSP+RFVDI IP N K  HSIG ++WLLAR VL++RG
Sbjct: 132 RTDHQPIKEGALGNIPIIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFWLLARMVLQMRG 191

Query: 637 VLPR*PALGCCG*FVLLP*PEESE-KDEQQAKEQAVVPAKP 756
            +                 PEE++ +DE +A  QA   A P
Sbjct: 192 TIAAGQKWDVMVDLFFYREPEETKPEDEDEAGPQAEYGALP 232


>At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 280

 Score =  244 bits (598), Expect = 5e-65
 Identities = 110/178 (61%), Positives = 136/178 (76%)
 Frame = +1

Query: 109 EEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENP 288
           E D+  ML+A  HLG +N N+QME YV+KRR DG ++INL +TW+KL +AAR +VAIENP
Sbjct: 17  EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENP 76

Query: 289 ADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDH 468
            D+ V S+RP+GQRAVLKFA +TG   IAGR TPG FTNQ+Q +F EPRLLI+ DP  DH
Sbjct: 77  KDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTDH 136

Query: 469 QPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVL 642
           QPI E +  NIP IA C+TDSP+ FVDI IP N K  HSIG ++WLLAR VL++RG +
Sbjct: 137 QPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI 194



 Score = 33.9 bits (74), Expect = 0.14
 Identities = 12/20 (60%), Positives = 18/20 (90%)
 Frame = +2

Query: 653 QRWDVVVDLFFYRDLKKVKR 712
           Q+WDV+VDLFFYR+ ++ K+
Sbjct: 198 QKWDVMVDLFFYREPEEAKQ 217


>At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 332

 Score =  244 bits (598), Expect = 5e-65
 Identities = 110/178 (61%), Positives = 136/178 (76%)
 Frame = +1

Query: 109 EEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENP 288
           E D+  ML+A  HLG +N N+QME YV+KRR DG ++INL +TW+KL +AAR +VAIENP
Sbjct: 17  EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENP 76

Query: 289 ADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDH 468
            D+ V S+RP+GQRAVLKFA +TG   IAGR TPG FTNQ+Q +F EPRLLI+ DP  DH
Sbjct: 77  KDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTDH 136

Query: 469 QPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVL 642
           QPI E +  NIP IA C+TDSP+ FVDI IP N K  HSIG ++WLLAR VL++RG +
Sbjct: 137 QPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI 194


>At2g22340.1 68415.m02651 hypothetical protein
          Length = 358

 Score = 32.7 bits (71), Expect = 0.32
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +3

Query: 147 SWGRKC*LPDGDLCLQTTC*WYPCDQLASYLGKTCSGCSC 266
           SW     LP+GD  +Q  C WY   +  S +G+  +   C
Sbjct: 188 SWTEASLLPEGDCFIQLNCLWYKPKEDTSVMGRKMASSDC 227


>At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RPS2)
           identical to SP|Q9GCB9 Mitochondrial ribosomal protein
           S2 {Arabidopsis thaliana}; contains Pfam profile
           PF00318: ribosomal protein S2
          Length = 219

 Score = 32.3 bits (70), Expect = 0.43
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +1

Query: 430 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVD-IAIPCNTKSS 579
           P  ++V D  +    I EAS + IPV+A+ + + PL F + I  P   + S
Sbjct: 131 PDCVVVFDSERKSSVILEASKLQIPVVAIVDPNVPLEFFEKITYPVPARDS 181


>At2g07020.1 68415.m00803 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 700

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +1

Query: 385 TPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEA 486
           TP   TNQ++ A  E     +LDP     PI EA
Sbjct: 620 TPMGLTNQVEKAIEEGNFAKILDPLVTDWPIEEA 653


>At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 823

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 8/30 (26%), Positives = 22/30 (73%)
 Frame = +2

Query: 650 DQRWDVVVDLFFYRDLKKVKRMNNKPRNRL 739
           ++ WD+  D ++Y+++K++K  +++P  +L
Sbjct: 346 EEPWDLPEDDYYYQEIKRLKTRSSQPERQL 375


>At4g35540.1 68417.m05051 expressed protein transcription factor
           IIIB chain BRF1, Saccharomycescerevisiae, PIR2:A44072
          Length = 527

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = -3

Query: 683 RTNQPQHPSAG-HRGSTPRSLSTSRANNHHIKPIEWEDLVLHGIAMSTNLSGESV 522
           R N  QHPS     G+    L  S+        I+WEDLV+  + +  N++ E +
Sbjct: 455 RINAIQHPSDNVSEGALSLELEHSKKKRKKGSEIDWEDLVIQTLVLH-NVNEEEI 508


>At2g34150.1 68415.m04180 expressed protein
          Length = 700

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = -2

Query: 558 DSNVHKS*WGVCVAQSNHRNVDI*SFSNGLMVLCRVQYNQETRFTECSLDLVSKSTW 388
           D  +H+  W      S   +     FSN L  +  +Q +QE+   E S D  S  TW
Sbjct: 308 DELIHQDPWAASEISSGTHSYSN-GFSNPLYDISGIQEHQESEEVESSCDTESIKTW 363


>At3g47080.1 68416.m05112 expressed protein
          Length = 515

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = -2

Query: 675 STTTSQRWSPGKHTTKPQHFTCQQPPHQTNRVGRLGVAWDSNV 547
           +TTTS  WS G+HT  PQ  +  Q    + R    G+A D +V
Sbjct: 6   ATTTSFHWS-GRHTAIPQCPSFSQTLTSSKRRRSRGIAGDVSV 47


>At1g11980.1 68414.m01384 ubiquitin family protein similar to Chain
           A, Structure Of Ubiquitin-Like Protein, Rub1 GI:6729726
           from [Arabidopsis thaliana]
          Length = 78

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = +3

Query: 213 PCDQLASYLGKTCSGCSCCRSHREPR*CVRHLITALRSACC 335
           P  Q   Y GK  +     + +   R  V HL+ ALR  CC
Sbjct: 38  PVHQRIVYTGKQLADDLTAKHYNLERGSVLHLVLALRGGCC 78


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,314,291
Number of Sequences: 28952
Number of extensions: 441734
Number of successful extensions: 1078
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1043
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1077
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2009406400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)