Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_G09
(853 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g24550.1 68416.m03083 protein kinase family protein contains ... 34 0.10
At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest ... 32 0.42
At1g62970.1 68414.m07110 DNAJ heat shock N-terminal domain-conta... 32 0.56
At4g00890.1 68417.m00120 proline-rich family protein contains pr... 31 0.97
At2g24980.1 68415.m02987 proline-rich extensin-like family prote... 31 1.3
At2g28440.1 68415.m03455 proline-rich family protein contains pr... 30 1.7
At5g53870.1 68418.m06701 plastocyanin-like domain-containing pro... 29 3.0
At5g49390.1 68418.m06112 hypothetical protein 29 3.0
At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibit... 29 3.0
At5g55020.1 68418.m06853 myb family transcription factor (MYB120... 29 3.9
At3g47450.2 68416.m05160 expressed protein 29 3.9
At3g47450.1 68416.m05159 expressed protein 29 3.9
At5g14920.1 68418.m01750 gibberellin-regulated family protein si... 29 5.2
At5g06630.1 68418.m00749 proline-rich extensin-like family prote... 28 6.9
At1g50090.1 68414.m05619 aminotransferase class IV family protei... 28 6.9
At5g51020.1 68418.m06325 expressed protein similar to unknown pr... 28 9.1
At4g22470.1 68417.m03245 protease inhibitor/seed storage/lipid t... 28 9.1
At4g02070.1 68417.m00277 DNA mismatch repair protein MSH6-1 (MSH... 28 9.1
At3g22440.1 68416.m02836 hydroxyproline-rich glycoprotein family... 28 9.1
At3g19430.1 68416.m02464 late embryogenesis abundant protein-rel... 28 9.1
At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex... 28 9.1
At3g09000.1 68416.m01053 proline-rich family protein 28 9.1
>At3g24550.1 68416.m03083 protein kinase family protein contains
Pfam domain PF00069: Protein kinase domain
Length = 652
Score = 34.3 bits (75), Expect = 0.10
Identities = 27/75 (36%), Positives = 35/75 (46%), Gaps = 14/75 (18%)
Frame = +2
Query: 533 PPSPAISATSTR-----SSNPRFHTPTTP----DLTSISINPLTPYXKEFAP-----GLK 670
PPSP ++T+T SS P TP++P S S P +P P L
Sbjct: 15 PPSPPTNSTTTTPPPAASSPPPTTTPSSPPPSPSTNSTSPPPSSPLPPSLPPPSPPGSLT 74
Query: 671 PPLSSEAPSAYLTPS 715
PPL +PSA +TPS
Sbjct: 75 PPLPQPSPSAPITPS 89
>At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest
subunit (RPB205) (RPII) (RPB1) nearly identical to
P|P18616 DNA-directed RNA polymerase II largest subunit
(EC 2.7.7.6) {Arabidopsis thaliana}
Length = 1840
Score = 32.3 bits (70), Expect = 0.42
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Frame = +2
Query: 533 PPSPAISATS-TRSSNPRFHTPTTPDL--TSISINPLTPYXKEFAPGLKPPLSSEAPSAY 703
P SP+ S TS + S ++PT+P TS S +P +P +P P + +PS
Sbjct: 1680 PTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYGPTSPSYNPQSAKYSPSIA 1739
Query: 704 LTPSS 718
+PS+
Sbjct: 1740 YSPSN 1744
>At1g62970.1 68414.m07110 DNAJ heat shock N-terminal
domain-containing protein low similarity to AHM1
[Triticum aestivum] GI:6691467; contains Pfam profile
PF00226: DnaJ domain
Length = 797
Score = 31.9 bits (69), Expect = 0.56
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Frame = +3
Query: 483 PFILSHYYWRSRPYASSHPPLRSR---LHQPDHQIPDSIHQPPQT*HPFP 623
PF +S +RP+ +S PP S+ + QP + QPP T P P
Sbjct: 488 PFSMSQPSSTARPFPASQPPAASKSFPISQPPTTSKPFVSQPPNTSKPMP 537
>At4g00890.1 68417.m00120 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 431
Score = 31.1 bits (67), Expect = 0.97
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = +2
Query: 530 KPPSPAISATSTRS--SNPRFHTPTTPDLTSISINPLTPYXKE 652
+PP + T ++S +P FH + P+ S+ ++PL+P KE
Sbjct: 29 QPPRRTVQETLSQSPPQSPLFHPQSPPEPKSLPLSPLSPKSKE 71
>At2g24980.1 68415.m02987 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 559
Score = 30.7 bits (66), Expect = 1.3
Identities = 23/57 (40%), Positives = 29/57 (50%)
Frame = +2
Query: 545 AISATSTRSSNPRFHTPTTPDLTSISINPLTPYXKEFAPGLKPPLSSEAPSAYLTPS 715
AI+AT T S P + +P TP S S P ++AP KP + S P Y TPS
Sbjct: 15 AIAATVT--SYP-YSSPQTPSYNSPSYEHKGP---KYAPHPKPYVKSSPPPQYYTPS 65
>At2g28440.1 68415.m03455 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965;
contains similarity to vegetative cell wall protein gp1
[Chlamydomonas reinhardtii] gi|12018147|gb|AAG45420; +
Length = 268
Score = 30.3 bits (65), Expect = 1.7
Identities = 23/80 (28%), Positives = 31/80 (38%)
Frame = +2
Query: 539 SPAISATSTRSSNPRFHTPTTPDLTSISINPLTPYXKEFAPGLKPPLSSEAPSAYLTPSS 718
SP + SS+P +P P + +PL P +PP SS + L PSS
Sbjct: 62 SPEEDSPLPPSSSPEEDSPLAPSSSPEVDSPLAPSSSPEVDSPQPPSSSPEADSPLPPSS 121
Query: 719 LGMAKXGFAPLFQVNDESQA 778
A +P ES A
Sbjct: 122 SPEANSPQSPASSPKPESLA 141
>At5g53870.1 68418.m06701 plastocyanin-like domain-containing
protein contains similarity to SP|Q02917 Early nodulin
55-2 precursor {Glycine max}; PF02298: Plastocyanin-like
domain
Length = 370
Score = 29.5 bits (63), Expect = 3.0
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +2
Query: 530 KPPSPAIS-ATSTRSSNPRFHTPTTPDLTSISINPLTPYXKEFAPGLKPPLSSEAPSAYL 706
+PP ++S A +SS+P HTP + S +P TP +P P S + S
Sbjct: 170 QPPRSSVSPAQPPKSSSPISHTPALSPSHATSHSPATPSPSPKSP--SPVSHSPSHSPAH 227
Query: 707 TPS 715
TPS
Sbjct: 228 TPS 230
>At5g49390.1 68418.m06112 hypothetical protein
Length = 422
Score = 29.5 bits (63), Expect = 3.0
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +2
Query: 530 KPPSPAISATSTRSSNPRFHT-PTTPDLTSISINPLTPYXKEFAPGLKPPLSSEAPSAYL 706
+P +P ++A S+ SS P PD+T+ S +TP E A P +++ A S +
Sbjct: 297 EPYNPGVTAASSTSSTQMEEADPYNPDVTAASSTSITP--MEVAEPYNPDVTA-ASSTSI 353
Query: 707 TP 712
TP
Sbjct: 354 TP 355
>At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibitor
family protein low similarity to extensin [Volvox
carteri] GI:21992
Length = 312
Score = 29.5 bits (63), Expect = 3.0
Identities = 19/62 (30%), Positives = 28/62 (45%)
Frame = +2
Query: 533 PPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPYXKEFAPGLKPPLSSEAPSAYLTP 712
P S S+ S S P +P++P S +PL+ +P S AP + L+P
Sbjct: 45 PSSAPPSSLSPSSPPPLSLSPSSPPPPPPSSSPLSSLSPSLSPSPPSSSPSSAPPSSLSP 104
Query: 713 SS 718
SS
Sbjct: 105 SS 106
>At5g55020.1 68418.m06853 myb family transcription factor (MYB120)
contains Pfam profile: PF00249 myb-like DNA-binding
domain
Length = 523
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +2
Query: 539 SPAISATSTRSSNPRF-HTPTTPDLTSISINPLTPYXKEFAPGLKPP 676
+P+ S+ T +S+P F H+ TP TS NP+ +E P + P
Sbjct: 352 NPSSSSYPTSTSSPSFLHSHYTPSSTSFHTNPVYSMKQEQLPSNQIP 398
>At3g47450.2 68416.m05160 expressed protein
Length = 561
Score = 29.1 bits (62), Expect = 3.9
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +2
Query: 545 AISATSTRSSNPRFHTPTT--PDLTSISINPLTPYXKEFAPGLKPPLS 682
A+ ST S PR HT T P+LT I NP T + +PP+S
Sbjct: 2 ALRTLSTFPSLPRRHTTTRREPNLTVIYRNPTTSIVCKSIANSEPPVS 49
>At3g47450.1 68416.m05159 expressed protein
Length = 561
Score = 29.1 bits (62), Expect = 3.9
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +2
Query: 545 AISATSTRSSNPRFHTPTT--PDLTSISINPLTPYXKEFAPGLKPPLS 682
A+ ST S PR HT T P+LT I NP T + +PP+S
Sbjct: 2 ALRTLSTFPSLPRRHTTTRREPNLTVIYRNPTTSIVCKSIANSEPPVS 49
>At5g14920.1 68418.m01750 gibberellin-regulated family protein
similar to SP|P46689 Gibberellin-regulated protein 1
precursor {Arabidopsis thaliana}; contains Pfam profile
PF02704: Gibberellin regulated protein
Length = 275
Score = 28.7 bits (61), Expect = 5.2
Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
Frame = +2
Query: 530 KPPSPAISATSTRSSNPRFHTPTT-PDLTSISINPLTPYXKE---FAPGLKPPLSSEAPS 697
KPP+P + S + + TPT P TS P TP + P KPP S P
Sbjct: 108 KPPTPTVKPPSVQPPTYKPPTPTVKPPTTSPVKPPTTPPVQSPPVQPPTYKPPTSPVKPP 167
Query: 698 AYLTP 712
P
Sbjct: 168 TTTPP 172
>At5g06630.1 68418.m00749 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 440
Score = 28.3 bits (60), Expect = 6.9
Identities = 23/57 (40%), Positives = 29/57 (50%)
Frame = +2
Query: 545 AISATSTRSSNPRFHTPTTPDLTSISINPLTPYXKEFAPGLKPPLSSEAPSAYLTPS 715
AI+AT T S P + +P TP S S P ++AP KP + S P Y TPS
Sbjct: 21 AIAATVT--SYP-YSSPHTPAYDSPSYEHKGP---KYAPHPKPYVYSSPPPPYYTPS 71
>At1g50090.1 68414.m05619 aminotransferase class IV family protein
contains Pfam profile: PF01063 aminotransferase class IV
Length = 367
Score = 28.3 bits (60), Expect = 6.9
Identities = 21/83 (25%), Positives = 37/83 (44%)
Frame = +1
Query: 310 VQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVEGVNVLATPS 489
V+S N S ++K +A V+F A + K V C ++ + N+++TP
Sbjct: 201 VKSCTNYSPVVKSLIEAKSSGFSDVLFLDAATGKNIEEVSTC----NIFILKGNIVSTPP 256
Query: 490 SSRITIGGLALMHQATLPCDLGY 558
+S + G+ L D+GY
Sbjct: 257 TSGTILPGITRKSICELARDIGY 279
>At5g51020.1 68418.m06325 expressed protein similar to unknown
protein (pir||S76207)
Length = 269
Score = 27.9 bits (59), Expect = 9.1
Identities = 21/72 (29%), Positives = 30/72 (41%)
Frame = -2
Query: 717 DEGVRYADGASDDNGGFNPGANSX*YGVRGLMEMDVKSGVVGVWNRGFDDRVDVAEIAGE 538
D G R S GGF N Y L + K+ + +W+RGFD+ + E
Sbjct: 172 DRGKRCLYEGSTSPGGFPNSWNGASYCTSDLAVL--KNNEIHLWDRGFDENRNQVWGPKE 229
Query: 537 GGLMHKGETANS 502
G K T++S
Sbjct: 230 GPYEFKPATSSS 241
>At4g22470.1 68417.m03245 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
hydroxyproline-rich glycoprotein DZ-HRGP from Volvox
carteri f. nagariensis GP|6523547; contains Pfam profile
PF00234 Protease inhibitor/seed storage/LTP family
Length = 375
Score = 27.9 bits (59), Expect = 9.1
Identities = 22/60 (36%), Positives = 26/60 (43%)
Frame = +2
Query: 533 PPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPYXKEFAPGLKPPLSSEAPSAYLTP 712
PP PAI T S P TP P T+ P P K P L PP ++ P +TP
Sbjct: 113 PPPPAI--TPPLSPPPPAITPPPPLATT---PPALP-PKPLPPPLSPPQTTPPPPPAITP 166
>At4g02070.1 68417.m00277 DNA mismatch repair protein MSH6-1
(MSH6-1) (AGAA.3) identical to SP|O04716 DNA mismatch
repair protein MSH6-1 (AtMsh6-1) cress] {Arabidopsis
thaliana}
Length = 1324
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = +1
Query: 313 QSLPNVSSIIKGYRDAY 363
QSLPN+SS IK ++DA+
Sbjct: 854 QSLPNISSSIKYFKDAF 870
>At3g22440.1 68416.m02836 hydroxyproline-rich glycoprotein family
protein identical to hydroxyproline-rich glycoprotein
[Arabidopsis thaliana] gi|9293881|dbj|BAB01784
Length = 532
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +3
Query: 522 YASSHPPLRSRLHQPDHQIPDSIHQPPQT 608
Y SS P +RS H P + P + PP T
Sbjct: 441 YVSSFPFIRSPSHSPQYASPAAYPSPPTT 469
>At3g19430.1 68416.m02464 late embryogenesis abundant
protein-related / LEA protein-related similar to late
embryogenesis abundant protein [Picea glauca] GI:1350543
Length = 559
Score = 27.9 bits (59), Expect = 9.1
Identities = 21/68 (30%), Positives = 26/68 (38%), Gaps = 6/68 (8%)
Frame = +2
Query: 533 PPSPAISATSTRSSNPRFHTPTT---PDLTSISINPLTPYXKEFAPGLKPPLSSEAPSA- 700
PP+P S S P TP+ PD+T P P + P P S PS
Sbjct: 185 PPTPTPSVPSPPDVTPTPPTPSVPSPPDVTPTPPTPSVPSPPDVTPTPPTPPSVPTPSGS 244
Query: 701 --YLTPSS 718
Y+ P S
Sbjct: 245 PPYVPPPS 252
>At3g19020.1 68416.m02415 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 956
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = +3
Query: 519 PYASSHPPLRSRLHQPDHQIPDSIHQPPQT*HPFP 623
P S PP+ S P H P +H PP H P
Sbjct: 673 PVYSPPPPVHSPPPPPVHSPPPPVHSPPPPVHSPP 707
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = +3
Query: 519 PYASSHPPLRSRLHQPDHQIPDSIHQPPQT*HPFP 623
P S PP+ S P H P +H PP H P
Sbjct: 755 PVHSPPPPVHSPPPPPVHSPPPPVHSPPPPVHSPP 789
>At3g09000.1 68416.m01053 proline-rich family protein
Length = 541
Score = 27.9 bits (59), Expect = 9.1
Identities = 22/57 (38%), Positives = 28/57 (49%)
Frame = +2
Query: 545 AISATSTRSSNPRFHTPTTPDLTSISINPLTPYXKEFAPGLKPPLSSEAPSAYLTPS 715
A SAT TRS NPR P++ P TP + P +SS+APS +PS
Sbjct: 217 ARSATPTRS-NPR---PSSASSKKPVSRPATPTRRPSTPTGPSIVSSKAPSRGTSPS 269
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,117,811
Number of Sequences: 28952
Number of extensions: 360171
Number of successful extensions: 1203
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1184
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1980143200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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