Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_G08
         (856 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000265-7|AAB52941.1|  893|Caenorhabditis elegans Hypothetical ...    32   0.45 
AF036693-2|AAO61430.1|  113|Caenorhabditis elegans Hypothetical ...    31   1.0  
AC006769-15|AAF60587.1|  337|Caenorhabditis elegans Serpentine r...    29   5.6  
AF038611-7|AAB92040.1|  466|Caenorhabditis elegans Hypothetical ...    28   9.7  

>AF000265-7|AAB52941.1|  893|Caenorhabditis elegans Hypothetical
           protein C18E3.3 protein.
          Length = 893

 Score = 32.3 bits (70), Expect = 0.45
 Identities = 18/80 (22%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
 Frame = -1

Query: 784 GSXRTEQYYYRNDKPS--VG*TNLSHDGXTPSSRSLLMGEQSNAWRILLRNDRKSRHRRI 611
           G    E  +Y    PS  VG  +++ +   P+ +S  MG++S+    + ++ +   H++ 
Sbjct: 200 GRLEDEINWYNQHNPSRTVGPNDMNGENEIPADKSSRMGKRSSKIPKIKKSKKSKHHKKK 259

Query: 610 KKQRRYERLAATSQLSPVVT 551
           K++ R E  +  S  + + T
Sbjct: 260 KRKSRSEDTSGNSSPTVIAT 279


>AF036693-2|AAO61430.1|  113|Caenorhabditis elegans Hypothetical
           protein C49A9.10 protein.
          Length = 113

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = +3

Query: 360 IWITFADRMVKYRRRIFQMSALSTFKEQKGKSWLDPDV-QYA*GLRKHGLSIL*YKEFLA 536
           +W+ +A  ++ Y R  +  + L   KE+ G     P V +Y   L +  +S   YK+  A
Sbjct: 45  VWLIYAQELLDYYRSKYPTNTLERVKEEIGDKIESPSVKEYV--LMEISMSEKRYKDMAA 102

Query: 537 RGARK 551
            G RK
Sbjct: 103 LGTRK 107


>AC006769-15|AAF60587.1|  337|Caenorhabditis elegans Serpentine
           receptor, class j protein19 protein.
          Length = 337

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +2

Query: 710 VVRQVSLPY*WLVVAIVILLSTXXTAVSDIWVMHSAXRPVVRXYIR 847
           +++   +PY  L+  I +L      A+ D + +HSA  P +R YIR
Sbjct: 119 IIKNYFMPYGLLLSVIYVLFHMSIWAMIDYFCLHSA--PEMRDYIR 162


>AF038611-7|AAB92040.1|  466|Caenorhabditis elegans Hypothetical
           protein E04A4.6 protein.
          Length = 466

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +3

Query: 174 DTANGSIYQFWFLRSYSVTWITVVILELIHAIRTL 278
           D+  G++   WF +++SV WI +V+   I   +T+
Sbjct: 224 DSLPGNVDNNWFEQTFSVYWIPLVVASEIETNQTV 258


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,623,579
Number of Sequences: 27780
Number of extensions: 368482
Number of successful extensions: 864
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)