Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_G07
         (842 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical ...    29   5.1  
At3g55220.1 68416.m06133 splicing factor, putative contains CPSF...    28   6.8  
At3g55200.1 68416.m06131 splicing factor, putative contains CPSF...    28   6.8  
At2g02070.1 68415.m00143 zinc finger (C2H2 type) family protein ...    28   6.8  

>At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical to
            XRN3 [Arabidopsis thaliana] gi|11875628|gb|AAG40732
          Length = 1020

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/41 (31%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
 Frame = -2

Query: 718  WWXSGG-RQRQPREQKQEHHGEHGAGRQRVCRGASPERHXE 599
            W   GG  Q  PR    +HH + G    R  RG     H +
Sbjct: 971  WHGQGGSEQNNPRGYNGQHHHQQGGDHDRRGRGRGSHHHHD 1011


>At3g55220.1 68416.m06133 splicing factor, putative contains CPSF A
           subunit region (PF03178); contains weak WD-40 repeat
           (PF00400); similar to Splicing factor 3B subunit 3
           (SF3b130)/spliceosomal protein/Splicing factor 3B
           subunit 3 (SAP 130)(KIAA0017)(SP:Q15393) Homo sapiens,
           EMBL:HSAJ1443_1
          Length = 1214

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 335 GRGERSPRRWLQPRLAVPRQASTSVPRTPA 246
           GRG RS  R L+P LA+   A + +P  P+
Sbjct: 426 GRGPRSSLRILRPGLAITEMAVSQLPGQPS 455


>At3g55200.1 68416.m06131 splicing factor, putative contains CPSF A
           subunit region (PF03178); contains weak WD-40 repeat
           (PF00400); similar to Splicing factor 3B subunit 3
           (SF3b130)/spliceosomal protein/Splicing factor 3B
           subunit 3 (SAP 130)(KIAA0017)(SP:Q15393) Homo sapiens,
           EMBL:HSAJ1443_1
          Length = 1214

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 335 GRGERSPRRWLQPRLAVPRQASTSVPRTPA 246
           GRG RS  R L+P LA+   A + +P  P+
Sbjct: 426 GRGPRSSLRILRPGLAITEMAVSQLPGQPS 455


>At2g02070.1 68415.m00143 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 602

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 12/27 (44%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
 Frame = -2

Query: 709 SGG-RQRQPREQKQEHHGEHGAGRQRV 632
           SGG +Q+Q ++Q+Q+   +HG  R+RV
Sbjct: 542 SGGFQQQQQQQQQQQQQQQHGNSRERV 568


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,890,564
Number of Sequences: 28952
Number of extensions: 397331
Number of successful extensions: 1200
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1196
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1950880000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)