Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_G06
(888 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0456 + 29521282-29522064 30 2.1
06_03_0854 + 25400855-25403741,25406174-25407708 29 4.9
03_05_1067 - 30105850-30106034,30106036-30106192,30106301-30106399 29 4.9
06_03_1448 + 30235336-30236763 29 6.5
06_03_1443 + 30182018-30183445 29 6.5
06_03_1440 + 30166515-30167942 29 6.5
06_03_1437 + 30151030-30152457 29 6.5
06_03_1429 + 30100834-30102261 29 6.5
06_03_1425 + 30084383-30085810 29 6.5
06_03_1420 - 30053713-30055140 29 6.5
06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764 29 6.5
02_04_0453 + 23053621-23054167,23054867-23054958,23055085-230551... 29 6.5
01_06_1406 - 37073548-37073822,37073892-37074111,37074200-370742... 29 6.5
03_02_0740 - 10836752-10837052,10837756-10837814,10837901-108384... 28 8.6
>01_06_0456 + 29521282-29522064
Length = 260
Score = 30.3 bits (65), Expect = 2.1
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 6/46 (13%)
Frame = -2
Query: 374 WQC--PRTGSRGSFKRRRAFPPRHHSARLER----NTVRPPILSTA 255
W+C P +G+RG +RRR P S R R +T+RP + S A
Sbjct: 13 WRCYSPASGARGGSRRRRRRPAGTTSRRCSRADRLDTLRPYVTSAA 58
>06_03_0854 + 25400855-25403741,25406174-25407708
Length = 1473
Score = 29.1 bits (62), Expect = 4.9
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -2
Query: 188 AKRSPTHATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVS 63
AKR+PT T P AR +++ +F +P P P +V+S
Sbjct: 475 AKRAPTAVTVGAPPPQARTPAAAPAKAF-VSAPAPAPSSVIS 515
>03_05_1067 - 30105850-30106034,30106036-30106192,30106301-30106399
Length = 146
Score = 29.1 bits (62), Expect = 4.9
Identities = 21/67 (31%), Positives = 30/67 (44%)
Frame = +1
Query: 277 RTVFRSKRAEW*RGGNARRRLKLPRDPVRGHCQVGSLTGAVHLSKNNAGVLRPAQRGQKP 456
R + +R E G +RR L D +RG+ + A H AG + RG KP
Sbjct: 59 RCIAEGRREEEEEVGRSRRGKDLDLDDMRGYGET-----ATHHGLRLAGREEVSPRGGKP 113
Query: 457 RVEQKGK 477
RV+ G+
Sbjct: 114 RVDNGGR 120
>06_03_1448 + 30235336-30236763
Length = 475
Score = 28.7 bits (61), Expect = 6.5
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 382 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 245
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1443 + 30182018-30183445
Length = 475
Score = 28.7 bits (61), Expect = 6.5
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 382 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 245
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1440 + 30166515-30167942
Length = 475
Score = 28.7 bits (61), Expect = 6.5
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 382 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 245
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1437 + 30151030-30152457
Length = 475
Score = 28.7 bits (61), Expect = 6.5
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 382 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 245
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1429 + 30100834-30102261
Length = 475
Score = 28.7 bits (61), Expect = 6.5
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 382 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 245
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1425 + 30084383-30085810
Length = 475
Score = 28.7 bits (61), Expect = 6.5
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 382 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 245
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1420 - 30053713-30055140
Length = 475
Score = 28.7 bits (61), Expect = 6.5
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 382 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 245
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764
Length = 640
Score = 28.7 bits (61), Expect = 6.5
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -3
Query: 310 TTLHAWNETPCARRYY 263
TT AW ETPCA R++
Sbjct: 560 TTTEAWVETPCAHRFH 575
>02_04_0453 +
23053621-23054167,23054867-23054958,23055085-23055149,
23058558-23059086
Length = 410
Score = 28.7 bits (61), Expect = 6.5
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = -2
Query: 677 NLLRNDRKSRHRRIKKATSL*TLGCHKPVIPVVTFLAPLAKNS 549
N N K R + KATS +L C K I + F PL+ +S
Sbjct: 73 NACENKEKRRKMMVAKATSPSSLDCPKLGILIEPFFIPLSSSS 115
>01_06_1406 -
37073548-37073822,37073892-37074111,37074200-37074246,
37074404-37074576,37075161-37075238,37075751-37075813,
37075889-37075961,37076150-37076189,37076302-37076368,
37076719-37078472,37079128-37079230,37080041-37080078,
37080221-37080347,37081944-37082152
Length = 1088
Score = 28.7 bits (61), Expect = 6.5
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +3
Query: 318 RKRSSPFKTPA*SGSRTLPGGEFDWGGTSV 407
+KR P K PA S S+ LPG + + G SV
Sbjct: 339 KKRGRPRKYPAPSNSKHLPGTDTELGNDSV 368
>03_02_0740 -
10836752-10837052,10837756-10837814,10837901-10838476,
10839965-10841686,10841776-10842173,10842264-10842318,
10842989-10843048,10843444-10843540,10844885-10844955,
10845029-10845109,10846054-10846124,10847951-10848119,
10848521-10848683,10848752-10848942,10849037-10849168
Length = 1381
Score = 28.3 bits (60), Expect = 8.6
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -3
Query: 397 PPQSNSPPGSVLEPDHAGVLNGDE 326
P +NS P +V +PD +LNGDE
Sbjct: 739 PTSNNSVPQNVDQPDSKKMLNGDE 762
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,934,925
Number of Sequences: 37544
Number of extensions: 529284
Number of successful extensions: 1666
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1664
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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