Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_G04
         (861 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1690 - 35382241-35382553,35382614-35382933,35383601-353851...    32   0.68 
01_06_1107 + 34568091-34568341,34568455-34568540,34569204-345692...    31   0.89 
01_03_0131 - 12858377-12858664,12859585-12859975,12863357-128633...    31   0.89 
06_01_0008 + 141405-142421                                             31   1.2  
12_02_0887 + 24018847-24019281                                         31   1.6  
12_02_1182 + 26751345-26751836                                         30   2.1  
07_03_1208 - 24896905-24896931,24897330-24897341,24898058-248983...    30   2.7  
05_07_0108 + 27735783-27736205                                         30   2.7  
11_06_0585 - 25230630-25230743,25230840-25231122,25231203-252313...    29   4.8  
05_02_0159 - 7186908-7187606                                           29   4.8  
07_03_0039 - 12718972-12720699                                         25   5.5  
06_01_0276 + 2035763-2036770                                           29   6.3  
01_06_0343 + 28566513-28566644,28566791-28568494,28569178-285692...    29   6.3  
12_01_0857 - 8043765-8043839,8044215-8044497,8044578-8044748,804...    28   8.3  
10_08_0141 + 15159160-15159306,15159708-15159815,15159958-151600...    28   8.3  
09_02_0487 + 9828283-9829354,9830436-9830580,9830863-9831153,983...    28   8.3  
05_01_0608 + 5429901-5429982,5430610-5431058,5436758-5437183,543...    28   8.3  
03_05_0602 - 26042832-26044295                                         28   8.3  
02_01_0300 + 2007414-2007665,2009268-2009320,2009409-2009453,200...    28   8.3  

>04_04_1690 -
           35382241-35382553,35382614-35382933,35383601-35385164,
           35385254-35385372,35385701-35385811,35386068-35386595,
           35386702-35386881,35386957-35387556,35387646-35388066,
           35388183-35388280,35388372-35389260,35389366-35389544,
           35389647-35389763,35389862-35389952,35390578-35390753
          Length = 1901

 Score = 31.9 bits (69), Expect = 0.68
 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +1

Query: 499 RTISREVACALAGSLPWDLEAEVXAAVYRRXTQSLSRGRTPGPSAV-GRWXRAARHLA 669
           R+I+R  + A AG  P+D+  E   AV+R+    + R R  GP+ V  RW    + LA
Sbjct: 792 RSIARNTSSARAGYKPFDIGNEAMDAVFRQ----IQRDRKLGPALVRARWPVLDKFLA 845


>01_06_1107 +
           34568091-34568341,34568455-34568540,34569204-34569292,
           34569406-34569530,34569825-34569901,34570210-34570862
          Length = 426

 Score = 31.5 bits (68), Expect = 0.89
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = -3

Query: 424 RATTRERRTKPYCARPPGTDAGRRRCNHRRWGEDGLVRPPSPAASGLTHQSG 269
           R+++    T   C  PP T++G+++  HR+  +DG       AA     + G
Sbjct: 24  RSSSSSSSTASSCIVPPRTESGKKKSKHRKRAKDGTGGDDDDAAVAAAPRKG 75


>01_03_0131 -
           12858377-12858664,12859585-12859975,12863357-12863397,
           12864745-12865419
          Length = 464

 Score = 31.5 bits (68), Expect = 0.89
 Identities = 20/42 (47%), Positives = 21/42 (50%)
 Frame = -3

Query: 361 GRRRCNHRRWGEDGLVRPPSPAASGLTHQSGGRSAIDCPAQG 236
           GRRR   RRWG   L R  S   SG   + GGR A   PA G
Sbjct: 140 GRRRI--RRWGLRWLARRSSRGRSGGGVRGGGRGAAADPAMG 179


>06_01_0008 + 141405-142421
          Length = 338

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
 Frame = -2

Query: 341 PTLGRRRASAPAIPSSFGTNS--PKWWSKRHRLSSTRPKYLSFGWTVIDTPPTMRFAPGG 168
           PTLG  R +APA  S+  + +  P+   +R R+S   P   +FG     + PT +   GG
Sbjct: 256 PTLGSHRPAAPASASASPSPAPPPRLAERRFRISLPWPLRAAFGGQAESSNPTNQDPVGG 315

Query: 167 GPLRTG 150
               +G
Sbjct: 316 STDASG 321


>12_02_0887 + 24018847-24019281
          Length = 144

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -3

Query: 382 RPPGTDAGRRRCNHRRWGEDGL-VRPPSPAASGLTHQSGGRSAID 251
           RP   + G R+  H RW  D   V+PPSP+A  +T +   RS +D
Sbjct: 69  RPSAANPGIRQ-RHARWARDSTPVKPPSPSA--VTPRDEERSRLD 110


>12_02_1182 + 26751345-26751836
          Length = 163

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
 Frame = -3

Query: 433 QRVRATTRERRTKPYCARPPGTDA----GRRRCNHRRW 332
           + V      RR +P  A+P  T      GRRRC+ RRW
Sbjct: 66  EMVETKPPSRRPRPSTAKPKKTQEHTGQGRRRCHRRRW 103


>07_03_1208 -
           24896905-24896931,24897330-24897341,24898058-24898333,
           24898410-24898466,24898561-24898638,24899112-24899198,
           24899815-24899904,24900012-24900218
          Length = 277

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = -1

Query: 264 EAPSTVQHKAQIFELRLDSDRYSADYEIRSRRRSPPDWVKAHRFGLA 124
           +A +  +H A IF+ RLD  ++  DY      R+PPD  +  ++ +A
Sbjct: 70  DAAARSEHPAIIFQERLD--KFLDDYRAALGLRTPPDMFRKEKYKIA 114


>05_07_0108 + 27735783-27736205
          Length = 140

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -3

Query: 430 RVRATTRERRTKPYCARPPGTDAGRRRCNHRRWGE 326
           R+   +R RR +    RPP  DAG R    RRWG+
Sbjct: 82  RINVVSRIRRER----RPPDDDAGGRGRQRRRWGK 112


>11_06_0585 -
           25230630-25230743,25230840-25231122,25231203-25231373,
           25231451-25232298,25232384-25232812,25232889-25233266,
           25233396-25233488
          Length = 771

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -1

Query: 270 VVEAPSTVQHKAQIFELRLDSDRYSADYEIRSRRRSPPDWVKAHR 136
           +V AP  V+   Q F+L+ D+D      E+ SR   PP   K  R
Sbjct: 409 LVSAPPAVEKGDQEFQLQYDTDFGDDGQEVSSRAHLPPVSTKRKR 453


>05_02_0159 - 7186908-7187606
          Length = 232

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 288 PEAAGDGGRTSPSSPQRRWLQRRRPASVP 374
           P+AAG GG  SP     R+L + R  S+P
Sbjct: 97  PKAAGGGGAVSPEGQSGRFLAKVRADSMP 125


>07_03_0039 - 12718972-12720699
          Length = 575

 Score = 25.4 bits (53), Expect(2) = 5.5
 Identities = 20/57 (35%), Positives = 26/57 (45%)
 Frame = -2

Query: 353 ALQPPTLGRRRASAPAIPSSFGTNSPKWWSKRHRLSSTRPKYLSFGWTVIDTPPTMR 183
           A  P +L    A  PA+PSS  T++     +RH L+      L F    I  PPT R
Sbjct: 64  ARSPRSLHAFLAGLPAVPSSLRTSAFPSLLRRH-LAFHPLNELPFFLESIGLPPTTR 119



 Score = 21.8 bits (44), Expect(2) = 5.5
 Identities = 18/58 (31%), Positives = 23/58 (39%), Gaps = 2/58 (3%)
 Frame = -2

Query: 611 PRLRDCVXRRY--TAAXTSASRSQGREPARAQATSREIVRYPLMTLTASTRCARSSKA 444
           P  R    RR   TAA +SA       P R +  +    R  +     +TRC  SS A
Sbjct: 2   PLFRAAALRRLLSTAAASSAPPKLWNLPYRLRRAAVPAARAAVSEYLHATRCLPSSHA 59


>06_01_0276 + 2035763-2036770
          Length = 335

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -2

Query: 221 FGWTVIDTPPTMRFAPGGGPLRTG*KHTASDL--RRATSR 108
           FG  V+D     +F  GGG +R G +H A+ L   RA  R
Sbjct: 248 FGPAVLDVKHLAKFCGGGGGIRGGLEHVAAALGVHRAAGR 287


>01_06_0343 + 28566513-28566644,28566791-28568494,28569178-28569240,
            28569241-28569310,28570438-28570715,28571886-28571963,
            28573017-28573715,28573811-28573913,28574096-28574196,
            28574272-28574446,28574843-28575013,28575534-28575634,
            28575706-28575771
          Length = 1246

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 199  VSITVQPKLKYLGLVLDSRWRFDHHFGELVP 291
            +S T++   K L L++   W FDH+  E VP
Sbjct: 976  LSATIEDLQKQLELIISYDWDFDHYLEEDVP 1006


>12_01_0857 -
           8043765-8043839,8044215-8044497,8044578-8044748,
           8044826-8045670,8045828-8046262,8046339-8046563,
           8046700-8046781,8046814-8047067
          Length = 789

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = -1

Query: 276 KVVVEAPSTVQHKAQIFELRLDSDRYSADYEIRSRRRSPPDWVKAHR 136
           + VV  P  V+ + +  +L+ D+D +    E+ SR   PP   ++ R
Sbjct: 438 QTVVSLPPAVEQRDEDLQLQYDTDFWDDGMEVDSRPHLPPSAKRSKR 484


>10_08_0141 +
           15159160-15159306,15159708-15159815,15159958-15160006,
           15160067-15160182,15160358-15160399,15161026-15161442,
           15162356-15162509,15162911-15162975,15163793-15163870,
           15163951-15164061,15164227-15164271,15164677-15164850,
           15165383-15166335,15166471-15166681,15167037-15167196,
           15168786-15169174
          Length = 1072

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
 Frame = +3

Query: 306 GGRTSPSSPQRRWLQRRRPA-SVPG-GRAQYGFVRRSRVVARTLCAQCSFAATSAAGARG 479
           GGR  PS  +R      RP  +VP   R ++G V      ART C       +S A +  
Sbjct: 31  GGRRLPSPRRRPITAAARPTWAVPRRSRLEWGRVEAQNSGARTSCRAALQWLSSTARSHV 90

Query: 480 ESHQGVPYDLPGGRL 524
               G P   PG ++
Sbjct: 91  NVGYGSPLVFPGNQV 105


>09_02_0487 +
           9828283-9829354,9830436-9830580,9830863-9831153,
           9831984-9832032
          Length = 518

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
 Frame = -2

Query: 608 RLRDCVXRRYTAAXTSASRSQGREPARAQATSREIVRYPLMTLTASTRCARSSKAAL-RA 432
           +L+D V +   A       S    PA A A S  +  +PL+  +AS+   +     L R 
Sbjct: 26  QLKDVVNKEDAAMMVLVMASSNGTPASAAAASPPVAMHPLLHASASSGDWKGVNFLLNRE 85

Query: 431 ESAGDHTGAPYKAIL 387
           E+  D +  P K  L
Sbjct: 86  EAYADSSVQPSKKFL 100


>05_01_0608 +
           5429901-5429982,5430610-5431058,5436758-5437183,
           5437270-5437643,5437655-5438113,5438191-5438361,
           5438442-5438760
          Length = 759

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 332 GRRRASAPAIPSSFGTNSPKWWSKRHRLSSTR 237
           GRRR     +P  FG     W  K+H+LS  +
Sbjct: 207 GRRRGIGSNVPWKFGFPQYAWQYKKHKLSKAQ 238


>03_05_0602 - 26042832-26044295
          Length = 487

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +3

Query: 291 EAAGDGGRTSPSSPQRRWLQRRRPASVPGGRAQYGF 398
           +A   GGRT+ +    R      PASVP   AQ+GF
Sbjct: 44  DACHRGGRTAATIVTTRHFAAMAPASVPVRVAQFGF 79


>02_01_0300 +
           2007414-2007665,2009268-2009320,2009409-2009453,
           2009559-2009661
          Length = 150

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +3

Query: 321 PSSPQRRWLQRRRPASVPGGRA--QYGFVRRSRVVA 422
           P S Q++  QRRRP  V GG A    G+V + R+ A
Sbjct: 36  PVSGQQQQQQRRRPTDVGGGAAMRSVGYVGKHRLSA 71


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,537,667
Number of Sequences: 37544
Number of extensions: 553471
Number of successful extensions: 2197
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 2058
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2195
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)