Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_G04
         (861 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039052-9|AAF98625.1|  302|Caenorhabditis elegans Hypothetical ...    32   0.46 
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ...    30   2.4  
U70848-4|AAB09108.1|  869|Caenorhabditis elegans Hypothetical pr...    28   9.8  
U39653-2|AAM69064.1| 1092|Caenorhabditis elegans Hypothetical pr...    28   9.8  
U39653-1|AAM69065.2| 2471|Caenorhabditis elegans Hypothetical pr...    28   9.8  

>AF039052-9|AAF98625.1|  302|Caenorhabditis elegans Hypothetical
           protein T22D1.2 protein.
          Length = 302

 Score = 32.3 bits (70), Expect = 0.46
 Identities = 18/41 (43%), Positives = 21/41 (51%)
 Frame = -3

Query: 175 PEEVPSGLGESTPLRTCGGPPQDLISECD*RRWRPPPSQGS 53
           P   P G G  TP  T  G PQDL  E +  R  PPP +G+
Sbjct: 220 PPPPPKGTGSPTPPPT--GEPQDLSGEGNASRRPPPPPKGT 258



 Score = 30.3 bits (65), Expect = 1.8
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = -3

Query: 175 PEEVPSGLGESTPLRTCGGPPQDLISECD*RRWRPPPSQGS 53
           P   P G G   P  T  G PQDL +E +  R  PPP +G+
Sbjct: 158 PPPPPKGTGSPPPPPT--GEPQDLSTEGNASRRPPPPPKGT 196



 Score = 29.9 bits (64), Expect = 2.4
 Identities = 17/41 (41%), Positives = 20/41 (48%)
 Frame = -3

Query: 175 PEEVPSGLGESTPLRTCGGPPQDLISECD*RRWRPPPSQGS 53
           P   P G G   P  T  G PQDL  E +  R  PPP +G+
Sbjct: 127 PPPPPKGTGSPPPPPT--GEPQDLSGEGNASRRPPPPPKGT 165



 Score = 29.9 bits (64), Expect = 2.4
 Identities = 17/41 (41%), Positives = 20/41 (48%)
 Frame = -3

Query: 175 PEEVPSGLGESTPLRTCGGPPQDLISECD*RRWRPPPSQGS 53
           P   P G G   P  T  G PQDL  E +  R  PPP +G+
Sbjct: 251 PPPPPKGTGSPPPPPT--GEPQDLSGEGNASRRPPPPPKGT 289



 Score = 29.5 bits (63), Expect = 3.2
 Identities = 17/41 (41%), Positives = 20/41 (48%)
 Frame = -3

Query: 175 PEEVPSGLGESTPLRTCGGPPQDLISECD*RRWRPPPSQGS 53
           P   P G G   P  T  G PQDL  E +  R  PPP +G+
Sbjct: 33  PPPPPKGTGTPPPPPT--GEPQDLSGEGNASRRPPPPPKGT 71



 Score = 29.5 bits (63), Expect = 3.2
 Identities = 17/41 (41%), Positives = 20/41 (48%)
 Frame = -3

Query: 175 PEEVPSGLGESTPLRTCGGPPQDLISECD*RRWRPPPSQGS 53
           P   P G G   P  T  G PQDL  E +  R  PPP +G+
Sbjct: 96  PPPPPKGTGTPPPPPT--GEPQDLSGEGNASRRPPPPPKGT 134



 Score = 28.3 bits (60), Expect = 7.4
 Identities = 17/41 (41%), Positives = 20/41 (48%)
 Frame = -3

Query: 175 PEEVPSGLGESTPLRTCGGPPQDLISECD*RRWRPPPSQGS 53
           P   P G G   P  T  G PQDL +E    R  PPP +G+
Sbjct: 189 PPPPPKGTGTPPPPPT--GEPQDLSAEGYASRRPPPPPKGT 227


>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
            protein F21E9.1 protein.
          Length = 1170

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +1

Query: 190  VGGVSITVQPKLKYLGLVLDSRWRFDHH 273
            V GV IT    ++ LGL+ D + +F+HH
Sbjct: 965  VDGVPITPSSTVRDLGLITDCKLKFEHH 992


>U70848-4|AAB09108.1|  869|Caenorhabditis elegans Hypothetical
           protein C43G2.2 protein.
          Length = 869

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -3

Query: 337 RWGEDGLVRPPSPAASGLTHQSGGRSAI 254
           R GEDG + PP P AS L  +  G S +
Sbjct: 269 RLGEDGELPPPQPGASDLFSELQGSSDV 296


>U39653-2|AAM69064.1| 1092|Caenorhabditis elegans Hypothetical
           protein T13H2.5b protein.
          Length = 1092

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = -2

Query: 194 PTMRFAPGGGPLRTG*KHTASDLRRATSRPNLRMRLTTVE 75
           PT +FA    P+R   KH+A+   RAT +P  + +++ V+
Sbjct: 344 PTQQFATPQQPVRGPGKHSAAAAARATPKPK-KAKMSNVQ 382


>U39653-1|AAM69065.2| 2471|Caenorhabditis elegans Hypothetical protein
            T13H2.5a protein.
          Length = 2471

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = -2

Query: 194  PTMRFAPGGGPLRTG*KHTASDLRRATSRPNLRMRLTTVE 75
            PT +FA    P+R   KH+A+   RAT +P  + +++ V+
Sbjct: 1723 PTQQFATPQQPVRGPGKHSAAAAARATPKPK-KAKMSNVQ 1761


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,537,697
Number of Sequences: 27780
Number of extensions: 363379
Number of successful extensions: 1026
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1026
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)