Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_G04
         (861 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    30   0.024
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    27   0.29 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.68 
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          25   0.90 
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    25   0.90 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   2.7  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 30.3 bits (65), Expect = 0.024
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = -2

Query: 350 LQPPTLGRRRASAPAIPSSFGTNSPKWWSKRHRLSSTRPKYLSFGWTVIDTPPTM 186
           L+ P+ G      P +    G   P +WS R   +  +  Y SFG  ++ T PT+
Sbjct: 306 LKRPSDGATSEPFPFLMLPLGAGRPAFWSLRKAFARKKTDYSSFG-KILATEPTL 359


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 26.6 bits (56), Expect = 0.29
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -1

Query: 519 DLPGDRTVPPDDSHREHPLRS*QQSCIAR 433
           D P D   P   S +   +RS QQSCI R
Sbjct: 269 DRPSDEAEPSSTSKKSGIVRSHQQSCINR 297


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.4 bits (53), Expect = 0.68
 Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
 Frame = -3

Query: 655  QHASTDRQPTGRASVPDS-GTVXCAGIPQLXPQPRDPKEG 539
            QH + +R+  G      S GT    G  Q+   PRD  EG
Sbjct: 1233 QHQAREREGVGAGIAETSAGTSNSRGAAQMSKVPRDVSEG 1272


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 25.0 bits (52), Expect = 0.90
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -2

Query: 266 SKRHRLSSTRPKYLSFGWTVIDTPP 192
           ++ H    TR K L  GW V+  PP
Sbjct: 125 ARPHTSLVTRQKLLELGWDVLPHPP 149


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 25.0 bits (52), Expect = 0.90
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -2

Query: 266 SKRHRLSSTRPKYLSFGWTVIDTPP 192
           ++ H    TR K L  GW V+  PP
Sbjct: 247 ARPHTSLVTRQKLLELGWDVLPHPP 271


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -2

Query: 299 SSFGTNSPKWWSKRHRLSSTRPK 231
           ++FG  S   W + HRL    PK
Sbjct: 435 ATFGIPSTTLWQRAHRLGIDTPK 457


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,673
Number of Sequences: 438
Number of extensions: 4797
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27795333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)