Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_G04
         (861 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g26150.1 68414.m03192 protein kinase family protein similar t...    31   0.75 
At5g40650.1 68418.m04935 succinate dehydrogenase, iron-sulphur s...    31   1.3  
At4g29090.1 68417.m04163 reverse transcriptase, putative / RNA-d...    30   2.3  
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p...    28   7.0  
At3g27380.1 68416.m03423 succinate dehydrogenase, iron-sulphur s...    28   9.2  

>At1g26150.1 68414.m03192 protein kinase family protein similar to
           Pto kinase interactor 1 GI:3668069 from [Lycopersicon
           esculentum]
          Length = 760

 Score = 31.5 bits (68), Expect = 0.75
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = -1

Query: 705 KXXQQPXPPXGVRQMTXSTXPPTDSRRAGRPSP 607
           K  +QP PP G ++ T S   P+DS+R   PSP
Sbjct: 226 KRREQPPPP-GSKRPTPSPPSPSDSKRPVHPSP 257


>At5g40650.1 68418.m04935 succinate dehydrogenase, iron-sulphur
           subunit, mitochondrial (SDH2-2) nearly identical to
           mitochondrial succinate dehydrogenase iron-sulphur
           subunit (sdh2-2) [gi:12049600] from Arabidopsis thaliana
          Length = 280

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 342 WLQRRRPASVPGGRAQYGFVRRSRVVARTLCAQCSFAATS 461
           WL+R+ PASVPG         R+++     C  C+  +TS
Sbjct: 163 WLKRKNPASVPGKEILQSKKDRAKLDGMYECILCACCSTS 202


>At4g29090.1 68417.m04163 reverse transcriptase, putative /
           RNA-dependent DNA polymerase, putative similar to
           reverse transcriptase [Arabidopsis thaliana] GI:976278;
           contains Pfam profile PF00075: RNase H
          Length = 575

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = -3

Query: 142 TPLRTCGGPPQDLISECD*RRWRPPPSQ 59
           T   +CG  PQ   S C   RWRPPP Q
Sbjct: 401 TEAESCGTKPQVNRSSCG--RWRPPPHQ 426


>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
           protein contains Pfam profile PF01480: PWI domain
          Length = 878

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 17/62 (27%), Positives = 27/62 (43%)
 Frame = -1

Query: 696 QQPXPPXGVRQMTXSTXPPTDSRRAGRPSPTQGLCXAPVYRSXYLSLEIPRKGTSEGAGD 517
           + P PP   R+   S  PP   RR+  P   +    +P+YR       + ++G S+  G 
Sbjct: 370 RSPSPPARRRR---SPSPPARRRRSPSPLYRRNRSPSPLYRRNRSRSPLAKRGRSDSPGR 426

Query: 516 LP 511
            P
Sbjct: 427 SP 428


>At3g27380.1 68416.m03423 succinate dehydrogenase, iron-sulphur
           subunit, mitochondrial (SDH2-1) nearly identical to
           mitochondrial succinate dehydrogenase iron-sulphur
           subunit (sdh2-1) [gi:12049598] from Arabidopsis thaliana
          Length = 279

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +3

Query: 342 WLQRRRPASVPGGRAQYGFVRRSRVVARTLCAQCSFAATS 461
           WL+R+ PASVP          R+++     C  C+  +TS
Sbjct: 164 WLKRKTPASVPAKEILQSKKDRAKLDGMYECILCACCSTS 203


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,943,536
Number of Sequences: 28952
Number of extensions: 350697
Number of successful extensions: 1024
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1022
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2009406400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)