Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_G03
         (858 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g54020.2 68414.m06155 myrosinase-associated protein, putative...    31   0.98 
At2g07020.1 68415.m00803 protein kinase family protein contains ...    30   1.7  
At5g14090.1 68418.m01648 hypothetical protein                          29   3.0  
At1g14270.1 68414.m01692 CAAX amino terminal protease family pro...    29   4.0  
At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family prote...    29   5.2  
At1g64340.1 68414.m07291 hypothetical protein                          28   6.9  
At4g38560.1 68417.m05459 expressed protein                             28   9.1  

>At1g54020.2 68414.m06155 myrosinase-associated protein, putative
           strong similarity to myrosinase-associated proteins
           GI:1769968, GI:1769970, GI:1216389,GI:1216391 from
           [Brassica napus]; contains InterPro Entry IPR001087
           Lipolytic enzyme, G-D-S-L family
          Length = 372

 Score = 31.1 bits (67), Expect = 0.98
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +1

Query: 538 LACGSQAFIATLLFDPSMSALPIIAKQNSPSVGLFT 645
           + C S + +  LL  P +  L  I+ QN P+VGLFT
Sbjct: 1   MECSSVSVLGILLVFPLLHNLVTISGQNLPAVGLFT 36


>At2g07020.1 68415.m00803 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 700

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 331 DSSKLTTSDARPSVDWF*SNKSTHPITGQSSD 236
           DS     S  RPS+DWF  N+S +  +  SS+
Sbjct: 223 DSDLSFVSSDRPSMDWFEDNRSNYATSSSSSE 254


>At5g14090.1 68418.m01648 hypothetical protein 
          Length = 361

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 369 DASFKCLPYQLSKSKRAKAGLIQMFSTHRDCEST 470
           +AS +C+ Y+L  S+ AK G      T  DC+ST
Sbjct: 324 EASKRCIQYELRSSRSAKNG-EHWIKTDEDCKST 356


>At1g14270.1 68414.m01692 CAAX amino terminal protease family
           protein contains Pfam profile PF02517: CAAX amino
           terminal protease family
          Length = 353

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +3

Query: 39  SS*RKRELPGLILPVVICLSQRLSHACLSASRIKAIPRMAQY 164
           SS R  E   ++  ++ CLSQ  S  CLS SR   +P+   Y
Sbjct: 4   SSLRTTENFKMVSQIISCLSQSSSLLCLSDSRRLILPKTCTY 45


>At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family protein
           beta-ketoacyl-CoA synthase - Simmondsia
           chinensis,PID:g1045614
          Length = 451

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 414 RAKAGLIQMFSTHRDCESTAYRSFSIK 494
           RAK  L+Q+  TH+  E T+Y+S  ++
Sbjct: 291 RAKYQLMQLVRTHKGMEDTSYKSIELR 317


>At1g64340.1 68414.m07291 hypothetical protein
          Length = 265

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 456 DCESTAYRSFSIKSF*QEVPEKLPQGITGLWQPSVHS 566
           DCEST Y SF + SF +++   +      +  P + S
Sbjct: 124 DCESTLYDSFELNSFNRQLNSAISSSARSMSMPHLSS 160


>At4g38560.1 68417.m05459 expressed protein
          Length = 521

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +2

Query: 83  SYMLVSKIKPCMSQCKPY*GDTANGSIYQFWFLRSYSVTWITVVILEL 226
           SY + + +   + +     GD A+GS  Q    +SYS+  +  V+LEL
Sbjct: 341 SYKVRASVSSTLQKILDKHGDIASGSKLQSLRTKSYSLETLAAVVLEL 388


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,122,355
Number of Sequences: 28952
Number of extensions: 330787
Number of successful extensions: 644
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1999652000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)