Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_F24
(918 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 107 3e-24
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 71 3e-13
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 54 3e-08
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 52 2e-07
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 48 2e-06
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 47 3e-06
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 47 4e-06
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 46 6e-06
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 46 1e-05
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 45 1e-05
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 44 2e-05
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 44 4e-05
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 43 7e-05
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 43 7e-05
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 42 9e-05
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 39 9e-04
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 39 0.001
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 38 0.002
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 38 0.002
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 37 0.003
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 36 0.006
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 36 0.008
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 35 0.014
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 35 0.014
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 35 0.019
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 35 0.019
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 34 0.025
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 34 0.025
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 33 0.057
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 33 0.075
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 30 0.40
SPBC8D2.09c |||U2 snRNP-associated protein Msl1 |Schizosaccharom... 30 0.53
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 29 0.92
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 27 2.8
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 27 3.7
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 26 8.6
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ... 26 8.6
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 8.6
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 26 8.6
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 107 bits (256), Expect = 3e-24
Identities = 53/110 (48%), Positives = 72/110 (65%), Gaps = 3/110 (2%)
Frame = +3
Query: 120 EKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLV 299
E GK+F+GGL+WET+ ++L+ YF ++GEV+DC VM++S +GRSRGFGF+TF +P VN V
Sbjct: 161 EDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEV 220
Query: 300 LQNGPHQLDGRTIDPKPCNPRTLQKPKRG---GGYPKVFLGRAAIERYRN 440
+ H LDG+ IDPK PR Q+ GG P G E +RN
Sbjct: 221 MSK-EHHLDGKIIDPKRAIPREEQEKTAKMFVGGVP----GDCTEEEFRN 265
Score = 67.7 bits (158), Expect = 2e-12
Identities = 27/90 (30%), Positives = 53/90 (58%)
Frame = +3
Query: 93 RMNPDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 272
R P + ++ K+FVGG+ + ++E + +F+++G V+D +M + ++GR RGFGFVT+
Sbjct: 236 RAIPREEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTY 295
Query: 273 ADPSLVNLVLQNGPHQLDGRTIDPKPCNPR 362
+ S V + + G+ ++ K P+
Sbjct: 296 ENESAVEATMSQPYITIHGKPVEVKRATPK 325
Score = 51.6 bits (118), Expect = 2e-07
Identities = 20/57 (35%), Positives = 37/57 (64%)
Frame = +1
Query: 394 TLRCSLGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFEDEIXVE 564
T + +GG+P + TE + FF ++G+V++ +M D+ + GFGF+++E+E VE
Sbjct: 246 TAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVE 302
Score = 43.2 bits (97), Expect = 5e-05
Identities = 19/54 (35%), Positives = 32/54 (59%)
Frame = +1
Query: 409 LGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFEDEIXVERV 570
+GGL T+ L +F ++G+V++ +M D +S GFGFL+F++ V V
Sbjct: 167 IGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEV 220
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 70.5 bits (165), Expect = 3e-13
Identities = 34/101 (33%), Positives = 54/101 (53%), Gaps = 6/101 (5%)
Frame = +3
Query: 102 PDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADP 281
P D +E +FVG LSW + L + F YG ++ V+ + +SGRS+G+G+V F P
Sbjct: 255 PSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETP 314
Query: 282 SLVN-LVLQNGPHQLDGRTI-----DPKPCNPRTLQKPKRG 386
V NG ++DGR + +P+P NP+ + + G
Sbjct: 315 EAAKAAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQQRAG 355
Score = 49.6 bits (113), Expect = 6e-07
Identities = 28/96 (29%), Positives = 47/96 (48%)
Frame = +3
Query: 105 DMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPS 284
D + +FVG LS+ ++++L F G++ + + +SGR +GFG+VTF+D
Sbjct: 359 DQLSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDID 418
Query: 285 LVNLVLQNGPHQLDGRTIDPKPCNPRTLQKPKRGGG 392
++ H + GR PC P+ GGG
Sbjct: 419 SAKKCVEMNGHFIAGR-----PCR-LDFSTPRTGGG 448
Score = 36.3 bits (80), Expect = 0.006
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +1
Query: 409 LGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFED 549
+G L N TE DL FG G + + + D + GFG+++F D
Sbjct: 370 VGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSD 416
Score = 30.3 bits (65), Expect = 0.40
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +1
Query: 391 DTLRCSLGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFE 546
+T +G L NV + L F YG ++ ++ D +S G+G++ FE
Sbjct: 261 ETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFE 312
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 54.0 bits (124), Expect = 3e-08
Identities = 32/108 (29%), Positives = 55/108 (50%), Gaps = 4/108 (3%)
Frame = +3
Query: 108 MDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSL 287
M D K +FVG L++E +E L RYF G + ++++ ++ +GF ++ F D
Sbjct: 264 MPQDTKRCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMG 323
Query: 288 VN-LVLQNGPHQLDGRTI---DPKPCNPRTLQKPKRGGGYPKVFLGRA 419
V+ +L N +GRT+ K P+++ + KRG + GRA
Sbjct: 324 VDKALLLNEKKMPEGRTLRIMRAKSTKPKSITRSKRGDEKTRTLQGRA 371
Score = 34.7 bits (76), Expect = 0.019
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +1
Query: 391 DTLRCS-LGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFEDEIXVER 567
DT RC +G L E L +FG G + V I+ D GF ++ F+D + V++
Sbjct: 267 DTKRCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDK 326
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 51.6 bits (118), Expect = 2e-07
Identities = 22/48 (45%), Positives = 34/48 (70%)
Frame = +3
Query: 132 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFA 275
LFV L+++T Q++L +FS G + VV+ N E+G +RG+GFVTF+
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFS 54
Score = 26.2 bits (55), Expect = 6.5
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = +1
Query: 436 ETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSF 543
+ DL FF G + V++ + ++ G+GF++F
Sbjct: 18 QDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTF 53
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 47.6 bits (108), Expect = 2e-06
Identities = 23/57 (40%), Positives = 34/57 (59%)
Frame = +3
Query: 111 DDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADP 281
++D K LFVG L ++S E LQ +F R G+V + + SGR +G+ FV F +P
Sbjct: 87 NNDRKVILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEFINP 143
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 47.2 bits (107), Expect = 3e-06
Identities = 17/66 (25%), Positives = 40/66 (60%)
Frame = +3
Query: 111 DDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLV 290
D + +++G L ++ +++++ FS +GE +D ++++ E+G+S+GF F+ + D
Sbjct: 26 DYSDSAYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRST 85
Query: 291 NLVLQN 308
L + N
Sbjct: 86 VLAVDN 91
Score = 39.5 bits (88), Expect = 7e-04
Identities = 16/54 (29%), Positives = 31/54 (57%)
Frame = +1
Query: 391 DTLRCSLGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFEDE 552
D+ +G L ++ E D+ F +G+ +++ ++ D+ KS GF FL +ED+
Sbjct: 29 DSAYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQ 82
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 46.8 bits (106), Expect = 4e-06
Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 11/121 (9%)
Frame = +3
Query: 114 DDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF--ADPSL 287
D +LFVG L + + E+L + FS Y ++ V+++ E G++RGFGFV+F +D L
Sbjct: 26 DPNHFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDRE-GKTRGFGFVSFKDSDQFL 84
Query: 288 VNLVLQNG------PHQLDGRTIDPKP--CNPRTLQKPKRGGGYPK-VFLGRAAIERYRN 440
+NG P +L T D KP N +T+ R Y + + G ++ +N
Sbjct: 85 KAWREKNGKYIGSRPVKLSRATSDVKPNEVNEKTIDSKIRNSLYSRTIHHGNRVQKKIKN 144
Query: 441 R 443
+
Sbjct: 145 K 145
Score = 33.5 bits (73), Expect = 0.043
Identities = 16/50 (32%), Positives = 30/50 (60%)
Frame = +1
Query: 400 RCSLGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFED 549
R +G L ++V + L F Y +++ ++ D+ + K+ GFGF+SF+D
Sbjct: 31 RLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDR-EGKTRGFGFVSFKD 79
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 46.4 bits (105), Expect = 6e-06
Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Frame = +3
Query: 105 DMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPS 284
D + + ++VG + + + E LQ +F+ G V ++ + +G +GF ++ F++PS
Sbjct: 48 DKESIDAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPS 107
Query: 285 LV-NLVLQNG 311
LV N +L NG
Sbjct: 108 LVPNALLLNG 117
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 45.6 bits (103), Expect = 1e-05
Identities = 19/49 (38%), Positives = 32/49 (65%)
Frame = +3
Query: 132 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD 278
LFVG L +ET+ +L+ +F + G++ +M ++G+ +GFGFV F D
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPD 278
Score = 37.1 bits (82), Expect = 0.003
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +1
Query: 409 LGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFED 549
+G L T+ DL FG+ G++ V +M + K GFGF+ F D
Sbjct: 232 VGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPD 278
Score = 29.1 bits (62), Expect = 0.92
Identities = 18/61 (29%), Positives = 30/61 (49%)
Frame = +3
Query: 156 ETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQNGPHQLDGRT 335
E S+EN++ + I + M + +++GF +V FA + L LQ L+GR
Sbjct: 135 EVSEENIKPITTEQITRIH-MPMSKEKRFQNKGFAYVDFATEDALKLALQCSEKALNGRN 193
Query: 336 I 338
I
Sbjct: 194 I 194
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 45.2 bits (102), Expect = 1e-05
Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
Frame = +3
Query: 102 PDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADP 281
P+ ++ LFV G++ ++ LQ+ FS++G V +M+ + SRGFGF++F+
Sbjct: 93 PEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTV 152
Query: 282 SLVNLVLQN-GPHQLDGRTIDPKPCNPRTLQKPKRG 386
+ N + GR ++ + P G
Sbjct: 153 EEATSAIDNLNSQEFYGRVLNVQKAKRSRPHSPTPG 188
Score = 40.3 bits (90), Expect = 4e-04
Identities = 19/45 (42%), Positives = 26/45 (57%)
Frame = +1
Query: 409 LGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSF 543
+ G+ S + E +L F ++G V V IM + K S GFGFLSF
Sbjct: 105 VSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSF 149
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 44.4 bits (100), Expect = 2e-05
Identities = 17/47 (36%), Positives = 32/47 (68%)
Frame = +3
Query: 132 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 272
+F+ LS++T + +++R F+RYG + V++N +G+S G+ FV F
Sbjct: 102 MFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVF 148
Score = 31.5 bits (68), Expect = 0.17
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +1
Query: 409 LGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFEDE 552
L L + E+D+ F RYG + + ++ ++ KS G+ F+ FE E
Sbjct: 104 LSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERE 151
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 43.6 bits (98), Expect = 4e-05
Identities = 20/54 (37%), Positives = 33/54 (61%)
Frame = +3
Query: 117 DEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD 278
D+ L V LS +T +E L+ F R+G + + K+ E+GR++GF FV++ D
Sbjct: 199 DDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYD 252
Score = 32.7 bits (71), Expect = 0.075
Identities = 18/63 (28%), Positives = 31/63 (49%)
Frame = +1
Query: 361 ALFKNRNVAVDTLRCSLGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLS 540
++FK TLR + L + E +L F R+G + V + D+ ++ GF F+S
Sbjct: 192 SMFKRERDDSATLRVT--NLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVS 249
Query: 541 FED 549
+ D
Sbjct: 250 YYD 252
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 42.7 bits (96), Expect = 7e-05
Identities = 19/47 (40%), Positives = 31/47 (65%)
Frame = +3
Query: 132 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 272
LFV L+ T E+L+ FSR+G++I C V+++ E+G S + F+ F
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEF 292
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 42.7 bits (96), Expect = 7e-05
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = +3
Query: 132 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVN-LVLQN 308
LF+ L E E L+ FS +G + +M + E G+S+GFGFV + P N V +
Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTD-EQGKSKGFGFVCYTTPEEANKAVTEM 424
Query: 309 GPHQLDGRTI 338
L G+ +
Sbjct: 425 NQRMLAGKPL 434
Score = 33.9 bits (74), Expect = 0.032
Identities = 13/49 (26%), Positives = 30/49 (61%)
Frame = +3
Query: 132 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD 278
+++ L E +++ F ++GE+ ++K+ ++ + RGFGFV +A+
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKD-QNDKPRGFGFVNYAN 310
Score = 33.1 bits (72), Expect = 0.057
Identities = 15/62 (24%), Positives = 31/62 (50%)
Frame = +1
Query: 418 LPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFEDEIXVERVTPRTLSXTS 597
L + +TE + FG++G++ + ++ DQ K GFGF+++ + ++
Sbjct: 268 LDTEITEQEFSDLFGQFGEITSLSLVKDQ-NDKPRGFGFVNYANHECAQKAVDELNDKEY 326
Query: 598 KG 603
KG
Sbjct: 327 KG 328
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 42.3 bits (95), Expect = 9e-05
Identities = 18/62 (29%), Positives = 37/62 (59%)
Frame = +3
Query: 120 EKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLV 299
+KG L+VG L ++ ++ YFS++G V+ + +N ++G S+ + F+ F + N+V
Sbjct: 103 KKGVLYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESLDVANVV 162
Query: 300 LQ 305
+
Sbjct: 163 AE 164
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 39.1 bits (87), Expect = 9e-04
Identities = 20/47 (42%), Positives = 26/47 (55%)
Frame = +3
Query: 132 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 272
++VG L W TS NL F+ G VI + +GRS+GFG V F
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARI-AYEPTGRSKGFGVVQF 327
Score = 31.9 bits (69), Expect = 0.13
Identities = 12/52 (23%), Positives = 31/52 (59%)
Frame = +3
Query: 120 EKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFA 275
++ +++VG LS++ L+ + + G V++C ++ N +G S+G + ++
Sbjct: 64 QERRVYVGNLSYQVRWFELKEFMGQVGNVLNCEIL-NLPNGLSKGCAIIEYS 114
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 38.7 bits (86), Expect = 0.001
Identities = 27/103 (26%), Positives = 50/103 (48%), Gaps = 7/103 (6%)
Frame = +3
Query: 132 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQNG 311
++VG + +E ++E + F + G V ++ + ESG+ +G+GF + DP+ ++N
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRNL 66
Query: 312 PHQLDG----RTIDPKPCNPRTLQK---PKRGGGYPKVFLGRA 419
+ G R P R L K P R G YP+ + ++
Sbjct: 67 NNYDAGTRRLRVDFPTADQIRRLDKLLGPSRYGYYPQSYANQS 109
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 37.9 bits (84), Expect = 0.002
Identities = 15/56 (26%), Positives = 29/56 (51%)
Frame = +3
Query: 117 DEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPS 284
D K K+++ L ++ + +G+++ ++KN G S+GF F F +PS
Sbjct: 307 DSKDKIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPS 362
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 37.9 bits (84), Expect = 0.002
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = +1
Query: 415 GLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFEDE 552
GLP N ++ +L ++ R+GKV + D G+GF FE+E
Sbjct: 302 GLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGFACFEEE 347
Score = 36.3 bits (80), Expect = 0.006
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +3
Query: 132 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD 278
+++ GL TS ENL Y +R+G+V + + E+ +G+GF F +
Sbjct: 298 VYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGFACFEE 346
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 37.1 bits (82), Expect = 0.003
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = +3
Query: 132 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 272
LFVG L + L FS G+++ + E+GRS+G+GFV++
Sbjct: 101 LFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSY 147
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 36.3 bits (80), Expect = 0.006
Identities = 14/49 (28%), Positives = 29/49 (59%)
Frame = +3
Query: 132 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD 278
+FVG + ++ S++ + F++ G V ++ + E+G +G+GF F D
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFD 57
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 35.9 bits (79), Expect = 0.008
Identities = 17/50 (34%), Positives = 29/50 (58%)
Frame = +3
Query: 129 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD 278
+LFVG + + ++E++ +F YG+++DC +M GFGFV D
Sbjct: 5 RLFVGRIPPQATREDMMDFFKGYGQILDCKLM--------NGFGFVEVED 46
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 35.1 bits (77), Expect = 0.014
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +3
Query: 132 LFVGGLSWETSQENLQRYF-SRYGEVIDCVVMKNSESGRSRGFGFVTFAD 278
+FVG LS ++ ++ F SRY +M + ++ SRG+GFV F D
Sbjct: 188 IFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTD 237
Score = 35.1 bits (77), Expect = 0.014
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +1
Query: 409 LGGLPSNVTETDLX-VFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFEDE 552
+G L NV E D+ +F RY IM D S G+GF+ F DE
Sbjct: 190 VGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDE 238
Score = 33.5 bits (73), Expect = 0.043
Identities = 19/59 (32%), Positives = 28/59 (47%)
Frame = +3
Query: 102 PDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD 278
P D +FVGGLS S+E L+ F +GE++ + +G GFV F +
Sbjct: 295 PQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPP------GKGCGFVQFVN 347
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 35.1 bits (77), Expect = 0.014
Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 2/106 (1%)
Frame = +1
Query: 328 AGPSTLSRAILALFKNRNVAVDTLRCSLGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQX 507
A PS L +I N + + +G LPS+ E ++ FG++GK+ + I+
Sbjct: 279 ARPSPLPESIQNFCSNTAASRNVF---IGNLPSSYHEKEIEEAFGKFGKIEHIKIL---- 331
Query: 508 KKKSXGF-GFLSFEDEIXVERVTPRTLSXTS-KGXXG*DKAAXEPP 639
KK+ F FL+ D I V R S + G D+ A PP
Sbjct: 332 SKKNIAFVHFLNIRDAIKVVRTLSCDPDYHSWRIFFGSDRCANHPP 377
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 34.7 bits (76), Expect = 0.019
Identities = 18/71 (25%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Frame = +3
Query: 129 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADP-SLVNLVLQ 305
+L V + + + E+++ F +G+ I+ V ++ + RS+GFG++ + +P S N + +
Sbjct: 341 RLCVSNIHFNLTDEDVKAIFEPFGD-IEFVHLQRDDQNRSKGFGYIQYRNPISARNALEK 399
Query: 306 NGPHQLDGRTI 338
L GR +
Sbjct: 400 MNGFDLAGRNM 410
Score = 34.3 bits (75), Expect = 0.025
Identities = 16/64 (25%), Positives = 32/64 (50%)
Frame = +3
Query: 111 DDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLV 290
++ ++ +FV L+ + L +F + G V D ++++ SGRS+G +V F V
Sbjct: 235 EERDRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSV 294
Query: 291 NLVL 302
+
Sbjct: 295 QAAI 298
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 34.7 bits (76), Expect = 0.019
Identities = 17/60 (28%), Positives = 29/60 (48%)
Frame = +1
Query: 370 KNRNVAVDTLRCSLGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFED 549
+N + +T R L L + E DL FG +G++ +V + D+ GF ++ F D
Sbjct: 314 RNIQLISETKRLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHD 373
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 34.3 bits (75), Expect = 0.025
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +3
Query: 168 ENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADP 281
+ L+ FS++G + C + + S+G+GFV+F+ P
Sbjct: 435 QQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHP 472
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 34.3 bits (75), Expect = 0.025
Identities = 23/75 (30%), Positives = 35/75 (46%)
Frame = +3
Query: 138 VGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQNGPH 317
VG LS++ ++ +L +F I V+ +E RSRGFG+V F ++ L
Sbjct: 98 VGNLSFDLTENDLGDFFGEGVTSIRLVIDPLTE--RSRGFGYVEFETADTLSAALALSGE 155
Query: 318 QLDGRTIDPKPCNPR 362
L GR + PR
Sbjct: 156 DLMGRPVRITVAEPR 170
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 33.1 bits (72), Expect = 0.057
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Frame = +3
Query: 129 KLFVGGLSWETSQENLQRYFSRYGEVIDC-VVMKNSESGRSRGFGFVTF 272
+++VGGLS +L+ FSR+G V + ++ K++ G + F ++ F
Sbjct: 6 RIYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTPVGTIQRFAYLNF 54
Score = 27.5 bits (58), Expect = 2.8
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Frame = +1
Query: 400 RCSLGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKS-XGFGFLSFE-DEIXVERVT 573
R +GGL S++ +DL F R+G V + I+ + F +L+F DE ++
Sbjct: 6 RIYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTPVGTIQRFAYLNFRTDEDKWQKCK 65
Query: 574 PRTLSXTSKG 603
+ T KG
Sbjct: 66 SYLSNATFKG 75
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 32.7 bits (71), Expect = 0.075
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +3
Query: 102 PDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEV 206
P +DE ++VG + S E + ++FS+YG+V
Sbjct: 9 PGQYEDESSTIYVGNIDSRLSDEEIIKHFSKYGQV 43
Score = 31.5 bits (68), Expect = 0.17
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +3
Query: 159 TSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 272
T + L+ FS +G ++ ++ SG S+G+GFV F
Sbjct: 395 TCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAF 432
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 30.3 bits (65), Expect = 0.40
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +1
Query: 418 LPSNVTETDLXVFFGRYGKVMEVVIMYDQXK 510
LPS+++E +L +FF G ++ + I+ D K
Sbjct: 597 LPSDISENELKIFFKDCGNIIRIFILEDNQK 627
>SPBC8D2.09c |||U2 snRNP-associated protein Msl1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 111
Score = 29.9 bits (64), Expect = 0.53
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +3
Query: 174 LQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQ 305
L FS YG V+D V +K + + RG V F DPS + ++
Sbjct: 24 LYMLFSTYGTVVDIVALK---TPKMRGQAHVVFFDPSAAAIAMK 64
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 29.1 bits (62), Expect = 0.92
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +3
Query: 132 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 272
++VG LS+ T++E + FS+ GE+ ++ + + GF FV +
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEY 80
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 27.5 bits (58), Expect = 2.8
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 12/61 (19%)
Frame = +3
Query: 132 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKN------------SESGRSRGFGFVTFA 275
++V GLS + E L+ F Y + +++ E R RGFGFV+FA
Sbjct: 207 IYVSGLSVTLTNEGLKEMFDAYNPTRARIAVRSLPPYIIRRIKLRGEQRRGRGFGFVSFA 266
Query: 276 D 278
+
Sbjct: 267 N 267
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 27.1 bits (57), Expect = 3.7
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 186 FSRYGEVIDCVVMKNSESGRSRGFGFVTF 272
FS+YG+VIDC ++ S + F F+ F
Sbjct: 386 FSKYGKVIDCKIIHQS---KKPAFAFLRF 411
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 25.8 bits (54), Expect = 8.6
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +3
Query: 132 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 272
LF+ LS++ + E + F RYG V ++ + ++RG FV +
Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYGPVRQ---IRLGNTVQTRGTAFVVY 57
>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1147
Score = 25.8 bits (54), Expect = 8.6
Identities = 23/88 (26%), Positives = 34/88 (38%), Gaps = 4/88 (4%)
Frame = +3
Query: 99 NPDMDDDEKGKLFV---GGLSWETSQENLQRYFSRYGEVIDCVVMKNS-ESGRSRGFGFV 266
N D+ D + L++ L W+ + + R RYG I C+ K GR + F
Sbjct: 154 NHDVADRQDNSLYLLNTSSLVWQKANASGARPSGRYGHTISCLGSKICLFGGRLLDYYFN 213
Query: 267 TFADPSLVNLVLQNGPHQLDGRTIDPKP 350
L NL + +L DP P
Sbjct: 214 DLVCFDLNNLNTSDSRWELASVVNDPPP 241
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.8 bits (54), Expect = 8.6
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -3
Query: 742 PPPAPXXXRPPXPRXXGPP 686
P PAP PP P GPP
Sbjct: 744 PAPAPIPVPPPAPIMGGPP 762
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 25.8 bits (54), Expect = 8.6
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Frame = +3
Query: 120 EKGKLFVGGLSWETS-QENLQ-----RYFSRYGEVIDCVVMKNSESGRSRG 254
+K +V GLS + + +EN+ YF +YG++I + K + + + G
Sbjct: 114 QKNLAYVNGLSPKVANEENINVLKGPEYFGQYGKIIKIAINKKAAANSANG 164
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,004,276
Number of Sequences: 5004
Number of extensions: 57899
Number of successful extensions: 211
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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