Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_F24
         (918 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    24   2.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   2.2  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   9.0  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             22   9.0  

>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 325 MAGPSTLSRAILALFKNRNVAVDTLRCSL 411
           +A P  +   ++   KN +V +DT RCS+
Sbjct: 185 LAVPQAIQFGVVYENKNGSVILDTARCSM 213


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 10/25 (40%), Positives = 10/25 (40%)
 Frame = -3

Query: 739 PPAPXXXRPPXPRXXGPPXQXXGXP 665
           P AP    PP P    PP    G P
Sbjct: 31  PQAPQRGSPPNPSQGPPPGGPPGAP 55


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = -3

Query: 307 FCSTRLTSEGSANVTKPKPLER 242
           +C  R ++ GS+N   P+P+ +
Sbjct: 46  YCGRRPSTFGSSNEALPQPISK 67


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = -3

Query: 307 FCSTRLTSEGSANVTKPKPLER 242
           +C  R ++ GS+N   P+P+ +
Sbjct: 46  YCGRRPSTFGSSNEALPQPISK 67


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,446
Number of Sequences: 438
Number of extensions: 4554
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29871933
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)