Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_F24
(918 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 100 1e-21
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 100 3e-21
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 100 3e-21
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 97 1e-20
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 97 1e-20
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 97 1e-20
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 95 6e-20
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 94 1e-19
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 90 2e-18
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 90 2e-18
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 87 1e-17
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 83 3e-16
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 82 4e-16
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 81 1e-15
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 81 1e-15
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 80 2e-15
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 79 4e-15
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 79 4e-15
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 79 4e-15
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 79 4e-15
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 78 9e-15
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 78 9e-15
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 74 1e-13
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 74 1e-13
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 74 1e-13
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 74 1e-13
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 73 2e-13
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 73 2e-13
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 73 3e-13
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 73 4e-13
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 73 4e-13
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 73 4e-13
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 73 4e-13
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 73 4e-13
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 72 5e-13
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 72 5e-13
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 72 5e-13
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 72 5e-13
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 71 8e-13
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 71 8e-13
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 71 1e-12
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 70 2e-12
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 70 2e-12
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 70 2e-12
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 70 2e-12
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 69 4e-12
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 69 6e-12
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 67 2e-11
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein... 66 2e-11
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 66 4e-11
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 64 9e-11
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 64 1e-10
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 64 2e-10
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 62 7e-10
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 61 9e-10
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 61 1e-09
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 61 1e-09
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 60 2e-09
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 60 3e-09
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 57 1e-08
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 56 2e-08
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 56 2e-08
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 56 3e-08
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 56 4e-08
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 56 4e-08
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 56 4e-08
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 55 6e-08
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 55 6e-08
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 55 6e-08
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 54 1e-07
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 53 3e-07
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 52 4e-07
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 52 7e-07
At5g51300.2 68418.m06360 splicing factor-related contains simila... 51 9e-07
At5g51300.1 68418.m06359 splicing factor-related contains simila... 51 9e-07
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 51 9e-07
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 51 1e-06
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 50 2e-06
At2g21690.1 68415.m02580 RNA-binding protein, putative similar t... 50 3e-06
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 49 4e-06
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 49 4e-06
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 49 5e-06
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 48 9e-06
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 48 1e-05
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 47 2e-05
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 47 2e-05
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 46 3e-05
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 46 4e-05
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 46 4e-05
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 46 4e-05
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 46 5e-05
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 45 8e-05
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 44 1e-04
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 44 1e-04
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 44 1e-04
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 44 1e-04
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 44 1e-04
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 44 1e-04
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 44 1e-04
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 44 1e-04
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 44 1e-04
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 44 2e-04
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 44 2e-04
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 44 2e-04
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 44 2e-04
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 44 2e-04
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 43 2e-04
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 43 2e-04
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 43 2e-04
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 43 2e-04
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 43 2e-04
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 43 2e-04
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 43 2e-04
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 43 3e-04
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 43 3e-04
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 42 4e-04
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 42 6e-04
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 42 6e-04
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 42 6e-04
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi... 42 8e-04
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 42 8e-04
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 42 8e-04
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 42 8e-04
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 42 8e-04
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 42 8e-04
At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ... 42 8e-04
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 41 0.001
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 41 0.001
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 41 0.001
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 41 0.001
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 41 0.001
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 41 0.001
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ... 40 0.002
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 40 0.002
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 40 0.002
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 40 0.002
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 40 0.002
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 40 0.002
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 40 0.002
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 39 0.004
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 39 0.004
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 39 0.004
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 39 0.004
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 39 0.004
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 39 0.005
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 38 0.007
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 38 0.007
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 38 0.007
At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing ... 38 0.007
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 38 0.009
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 38 0.009
At1g13730.1 68414.m01612 nuclear transport factor 2 (NTF2) famil... 38 0.009
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 38 0.012
At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing ... 37 0.016
At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing ... 37 0.016
At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing ... 37 0.016
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 37 0.022
At3g51950.1 68416.m05698 zinc finger (CCCH-type) family protein ... 36 0.028
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 36 0.038
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 36 0.038
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 36 0.038
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 36 0.050
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 36 0.050
At5g28390.1 68418.m03447 RNA recognition motif (RRM)-containing ... 35 0.066
At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing ... 35 0.066
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 35 0.087
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 34 0.11
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 34 0.15
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 34 0.15
At3g63450.1 68416.m07144 RNA recognition motif (RRM)-containing ... 33 0.20
At2g05160.1 68415.m00543 zinc finger (CCCH-type) family protein ... 33 0.20
At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s... 33 0.26
At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing ... 33 0.26
At2g47310.1 68415.m05906 flowering time control protein-related ... 33 0.26
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 33 0.35
At3g21100.1 68416.m02667 RNA recognition motif (RRM)-containing ... 33 0.35
At3g14450.1 68416.m01831 RNA-binding protein, putative contains ... 32 0.46
At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing ... 32 0.61
At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing ... 32 0.61
At3g01150.1 68416.m00019 polypyrimidine tract-binding protein, p... 31 0.81
At1g53650.1 68414.m06105 RNA-binding protein, putative similar t... 31 1.1
At1g51520.2 68414.m05799 expressed protein contains a weak hit t... 30 1.9
At1g51520.1 68414.m05798 expressed protein contains a weak hit t... 30 1.9
At3g50670.2 68416.m05543 U1 small nuclear ribonucleoprotein 70 (... 30 2.5
At3g49390.1 68416.m05399 RNA-binding protein, putative RNA-bindi... 30 2.5
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 30 2.5
At5g64430.1 68418.m08093 octicosapeptide/Phox/Bem1p (PB1) domain... 29 4.3
At5g54650.2 68418.m06805 formin homology 2 domain-containing pro... 29 4.3
At5g54650.1 68418.m06804 formin homology 2 domain-containing pro... 29 4.3
At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing ... 29 4.3
At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family... 29 4.3
At5g19030.3 68418.m02263 RNA recognition motif (RRM)-containing ... 29 5.7
At1g72800.1 68414.m08416 nuM1-related contains similarity with n... 29 5.7
At5g60170.1 68418.m07543 RNA recognition motif (RRM)-containing ... 28 7.5
At4g10610.1 68417.m01735 RNA-binding protein, putative 28 7.5
At3g45630.1 68416.m04928 RNA recognition motif (RRM)-containing ... 28 7.5
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 28 7.5
At1g05890.1 68414.m00617 zinc finger protein-related contains lo... 28 7.5
At5g55750.1 68418.m06949 hydroxyproline-rich glycoprotein family... 28 10.0
At5g20870.1 68418.m02478 glycosyl hydrolase family 17 protein si... 28 10.0
At5g13620.1 68418.m01578 expressed protein ; expression supporte... 28 10.0
At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing ... 28 10.0
At2g14870.1 68415.m01690 RNA recognition motif (RRM)-containing ... 28 10.0
At1g32790.1 68414.m04042 RNA-binding protein, putative similar t... 28 10.0
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 28 10.0
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 100 bits (240), Expect = 1e-21
Identities = 44/97 (45%), Positives = 67/97 (69%), Gaps = 4/97 (4%)
Frame = +3
Query: 96 MNPDMDDDEK----GKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGF 263
MNP+ E GKLF+GG+SW+T +E LQ YF +YG++++ V+M++ +GR+RGFGF
Sbjct: 1 MNPEEQKMESASDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGF 60
Query: 264 VTFADPSLVNLVLQNGPHQLDGRTIDPKPCNPRTLQK 374
+ FADPS+ V+ + H +DGRT++ K PR Q+
Sbjct: 61 IVFADPSVAERVIMD-KHIIDGRTVEAKKAVPRDDQQ 96
Score = 67.7 bits (158), Expect = 1e-11
Identities = 30/80 (37%), Positives = 48/80 (60%)
Frame = +3
Query: 129 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN 308
K+FVGGL ++ + YF ++G + D VVM + + R RGFGF+TF V++VL
Sbjct: 123 KIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHK 182
Query: 309 GPHQLDGRTIDPKPCNPRTL 368
H+L+G+ ++ K P+ L
Sbjct: 183 TFHELNGKMVEVKRAVPKEL 202
Score = 60.5 bits (140), Expect = 2e-09
Identities = 24/63 (38%), Positives = 42/63 (66%)
Frame = +1
Query: 394 TLRCSLGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFEDEIXVERVT 573
T + +GGLPS++TE + +F ++G + +VV+MYD ++ GFGF++F+ E V+ V
Sbjct: 121 TKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVL 180
Query: 574 PRT 582
+T
Sbjct: 181 HKT 183
Score = 50.0 bits (114), Expect = 2e-06
Identities = 24/62 (38%), Positives = 36/62 (58%)
Frame = +1
Query: 385 AVDTLRCSLGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFEDEIXVE 564
A D + +GG+ + E L +FG+YG ++E VIM D+ ++ GFGF+ F D E
Sbjct: 11 ASDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAE 70
Query: 565 RV 570
RV
Sbjct: 71 RV 72
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 99.5 bits (237), Expect = 3e-21
Identities = 40/81 (49%), Positives = 61/81 (75%)
Frame = +3
Query: 120 EKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLV 299
+ GKLF+GG+SW+T++E L+ YFS +GEVI+ V++K+ +GR+RGFGFV FADP++ +V
Sbjct: 4 DNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIV 63
Query: 300 LQNGPHQLDGRTIDPKPCNPR 362
+ H +DGR ++ K PR
Sbjct: 64 ITE-KHNIDGRLVEAKKAVPR 83
Score = 65.3 bits (152), Expect = 5e-11
Identities = 34/93 (36%), Positives = 51/93 (54%), Gaps = 4/93 (4%)
Frame = +3
Query: 129 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN 308
K+FVGGL ++ + + YF ++G D VVM + + R RGFGF+T+ V VL
Sbjct: 109 KIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLK 168
Query: 309 GPHQLDGRTIDPKPCNPRTLQK-PKR---GGGY 395
H+L+G+ ++ K P+ L P R G GY
Sbjct: 169 TFHELNGKMVEVKRAVPKELSPGPSRSPLGAGY 201
Score = 63.3 bits (147), Expect = 2e-10
Identities = 26/63 (41%), Positives = 43/63 (68%)
Frame = +1
Query: 394 TLRCSLGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFEDEIXVERVT 573
T + +GGLPS+VTE+D +F ++G +VV+MYD ++ GFGF++++ E VE+V
Sbjct: 107 TRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVL 166
Query: 574 PRT 582
+T
Sbjct: 167 LKT 169
Score = 42.3 bits (95), Expect = 4e-04
Identities = 20/60 (33%), Positives = 33/60 (55%)
Frame = +1
Query: 391 DTLRCSLGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFEDEIXVERV 570
D + +GG+ + E L +F +G+V+E VI+ D+ ++ GFGF+ F D E V
Sbjct: 4 DNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIV 63
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 99.5 bits (237), Expect = 3e-21
Identities = 40/81 (49%), Positives = 61/81 (75%)
Frame = +3
Query: 120 EKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLV 299
+ GKLF+GG+SW+T++E L+ YFS +GEVI+ V++K+ +GR+RGFGFV FADP++ +V
Sbjct: 4 DNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIV 63
Query: 300 LQNGPHQLDGRTIDPKPCNPR 362
+ H +DGR ++ K PR
Sbjct: 64 ITE-KHNIDGRLVEAKKAVPR 83
Score = 65.3 bits (152), Expect = 5e-11
Identities = 34/93 (36%), Positives = 51/93 (54%), Gaps = 4/93 (4%)
Frame = +3
Query: 129 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN 308
K+FVGGL ++ + + YF ++G D VVM + + R RGFGF+T+ V VL
Sbjct: 109 KIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLK 168
Query: 309 GPHQLDGRTIDPKPCNPRTLQK-PKR---GGGY 395
H+L+G+ ++ K P+ L P R G GY
Sbjct: 169 TFHELNGKMVEVKRAVPKELSPGPSRSPLGAGY 201
Score = 63.3 bits (147), Expect = 2e-10
Identities = 26/63 (41%), Positives = 43/63 (68%)
Frame = +1
Query: 394 TLRCSLGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFEDEIXVERVT 573
T + +GGLPS+VTE+D +F ++G +VV+MYD ++ GFGF++++ E VE+V
Sbjct: 107 TRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVL 166
Query: 574 PRT 582
+T
Sbjct: 167 LKT 169
Score = 42.3 bits (95), Expect = 4e-04
Identities = 20/60 (33%), Positives = 33/60 (55%)
Frame = +1
Query: 391 DTLRCSLGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFEDEIXVERV 570
D + +GG+ + E L +F +G+V+E VI+ D+ ++ GFGF+ F D E V
Sbjct: 4 DNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIV 63
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 97.5 bits (232), Expect = 1e-20
Identities = 40/87 (45%), Positives = 63/87 (72%)
Frame = +3
Query: 114 DDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVN 293
+ + GKLF+GG+SW+T +E L+ YFS YG+V++ V+M++ +GR+RGFGF+ FADP +
Sbjct: 2 ESDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSE 61
Query: 294 LVLQNGPHQLDGRTIDPKPCNPRTLQK 374
V+ + H +DGRT++ K PR Q+
Sbjct: 62 RVIMD-KHIIDGRTVEAKKAVPRDDQQ 87
Score = 68.1 bits (159), Expect = 8e-12
Identities = 30/80 (37%), Positives = 48/80 (60%)
Frame = +3
Query: 129 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN 308
K+FVGGL ++E + YF ++G + D VVM + + R RGFGF+TF V+ VL
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHK 170
Query: 309 GPHQLDGRTIDPKPCNPRTL 368
H+L+G+ ++ K P+ +
Sbjct: 171 TFHELNGKLVEVKRAVPKEI 190
Score = 61.3 bits (142), Expect = 9e-10
Identities = 24/63 (38%), Positives = 43/63 (68%)
Frame = +1
Query: 394 TLRCSLGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFEDEIXVERVT 573
T + +GGLPS++TE + +F ++G + +VV+MYD ++ GFGF++F+ + V+RV
Sbjct: 109 TKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVL 168
Query: 574 PRT 582
+T
Sbjct: 169 HKT 171
Score = 46.4 bits (105), Expect = 3e-05
Identities = 22/54 (40%), Positives = 31/54 (57%)
Frame = +1
Query: 409 LGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFEDEIXVERV 570
+GG+ + E L +F YG V+E VIM D+ ++ GFGF+ F D ERV
Sbjct: 10 IGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERV 63
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 97.5 bits (232), Expect = 1e-20
Identities = 40/87 (45%), Positives = 63/87 (72%)
Frame = +3
Query: 114 DDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVN 293
+ + GKLF+GG+SW+T +E L+ YFS YG+V++ V+M++ +GR+RGFGF+ FADP +
Sbjct: 2 ESDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSE 61
Query: 294 LVLQNGPHQLDGRTIDPKPCNPRTLQK 374
V+ + H +DGRT++ K PR Q+
Sbjct: 62 RVIMD-KHIIDGRTVEAKKAVPRDDQQ 87
Score = 68.1 bits (159), Expect = 8e-12
Identities = 30/80 (37%), Positives = 48/80 (60%)
Frame = +3
Query: 129 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN 308
K+FVGGL ++E + YF ++G + D VVM + + R RGFGF+TF V+ VL
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHK 170
Query: 309 GPHQLDGRTIDPKPCNPRTL 368
H+L+G+ ++ K P+ +
Sbjct: 171 TFHELNGKLVEVKRAVPKEI 190
Score = 61.3 bits (142), Expect = 9e-10
Identities = 24/63 (38%), Positives = 43/63 (68%)
Frame = +1
Query: 394 TLRCSLGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFEDEIXVERVT 573
T + +GGLPS++TE + +F ++G + +VV+MYD ++ GFGF++F+ + V+RV
Sbjct: 109 TKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVL 168
Query: 574 PRT 582
+T
Sbjct: 169 HKT 171
Score = 46.4 bits (105), Expect = 3e-05
Identities = 22/54 (40%), Positives = 31/54 (57%)
Frame = +1
Query: 409 LGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFEDEIXVERV 570
+GG+ + E L +F YG V+E VIM D+ ++ GFGF+ F D ERV
Sbjct: 10 IGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERV 63
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 97.5 bits (232), Expect = 1e-20
Identities = 40/87 (45%), Positives = 63/87 (72%)
Frame = +3
Query: 114 DDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVN 293
+ + GKLF+GG+SW+T +E L+ YFS YG+V++ V+M++ +GR+RGFGF+ FADP +
Sbjct: 2 ESDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSE 61
Query: 294 LVLQNGPHQLDGRTIDPKPCNPRTLQK 374
V+ + H +DGRT++ K PR Q+
Sbjct: 62 RVIMD-KHIIDGRTVEAKKAVPRDDQQ 87
Score = 68.1 bits (159), Expect = 8e-12
Identities = 30/80 (37%), Positives = 48/80 (60%)
Frame = +3
Query: 129 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN 308
K+FVGGL ++E + YF ++G + D VVM + + R RGFGF+TF V+ VL
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHK 170
Query: 309 GPHQLDGRTIDPKPCNPRTL 368
H+L+G+ ++ K P+ +
Sbjct: 171 TFHELNGKLVEVKRAVPKEI 190
Score = 61.3 bits (142), Expect = 9e-10
Identities = 24/63 (38%), Positives = 43/63 (68%)
Frame = +1
Query: 394 TLRCSLGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFEDEIXVERVT 573
T + +GGLPS++TE + +F ++G + +VV+MYD ++ GFGF++F+ + V+RV
Sbjct: 109 TKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVL 168
Query: 574 PRT 582
+T
Sbjct: 169 HKT 171
Score = 46.4 bits (105), Expect = 3e-05
Identities = 22/54 (40%), Positives = 31/54 (57%)
Frame = +1
Query: 409 LGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFEDEIXVERV 570
+GG+ + E L +F YG V+E VIM D+ ++ GFGF+ F D ERV
Sbjct: 10 IGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERV 63
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 95.1 bits (226), Expect = 6e-20
Identities = 41/93 (44%), Positives = 61/93 (65%)
Frame = +3
Query: 114 DDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVN 293
+ ++GKLF+GG+SW+T + L+ YFS +GEV+ VM+ +GR RGFGFV F+DP++++
Sbjct: 2 ESDQGKLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVID 61
Query: 294 LVLQNGPHQLDGRTIDPKPCNPRTLQKPKRGGG 392
VLQ+ H +D R +D K R Q P G
Sbjct: 62 RVLQD-KHHIDNRDVDVKRAMSREEQSPAGRSG 93
Score = 66.9 bits (156), Expect = 2e-11
Identities = 36/93 (38%), Positives = 49/93 (52%), Gaps = 5/93 (5%)
Frame = +3
Query: 129 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN 308
K+FVGGL + + + YF YG V D V+M + + R RGFGFV+F V+LVL
Sbjct: 111 KIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHK 170
Query: 309 GPHQLDGRTID-----PKPCNPRTLQKPKRGGG 392
H L+G+ ++ PK NP RG G
Sbjct: 171 TFHDLNGKQVEVKRALPKDANPGIASGGGRGSG 203
Score = 55.2 bits (127), Expect = 6e-08
Identities = 36/123 (29%), Positives = 52/123 (42%)
Frame = +1
Query: 388 VDTLRCSLGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFEDEIXVER 567
V T + +GGLP +T + +F YG V + VIM DQ ++ GFGF+SF+ E V+
Sbjct: 107 VRTKKIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDL 166
Query: 568 VTPRTLSXTSKGXXG*DKAAXEPPDGSGXTPGXXGXRPGRXAPXXXAXGXGXAGGPGXAP 747
V +T + +A P D + G G G G +G G
Sbjct: 167 VLHKTFHDLNGKQVEVKRAL--PKDANPGIASGGGRGSGGAGGFPGYGGSGGSGYEGRVD 224
Query: 748 XRR 756
R
Sbjct: 225 SNR 227
Score = 44.0 bits (99), Expect = 1e-04
Identities = 17/54 (31%), Positives = 33/54 (61%)
Frame = +1
Query: 409 LGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFEDEIXVERV 570
+GG+ + E L +F +G+V++V +M ++ + GFGF++F D ++RV
Sbjct: 10 IGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRV 63
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 94.3 bits (224), Expect = 1e-19
Identities = 42/87 (48%), Positives = 61/87 (70%)
Frame = +3
Query: 114 DDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVN 293
D ++GKLFVGG+SWET ++ L+ +F+ YGEV +VM++ +GR RGFGFV F+DPS+++
Sbjct: 2 DSDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLD 61
Query: 294 LVLQNGPHQLDGRTIDPKPCNPRTLQK 374
VLQ H +D R +D K R Q+
Sbjct: 62 RVLQE-KHSIDTREVDVKRAMSREEQQ 87
Score = 64.9 bits (151), Expect = 7e-11
Identities = 35/93 (37%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Frame = +3
Query: 129 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN 308
K+FVGGL + E ++YF YG V D +M + + R RGFGFV+F V+ VL
Sbjct: 111 KIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHK 170
Query: 309 GPHQLDGRTID-----PKPCNPRTLQKPKRGGG 392
H L G+ ++ PK NP + GGG
Sbjct: 171 TFHDLSGKQVEVKRALPKDANPGGGGRSMGGGG 203
Score = 59.3 bits (137), Expect = 4e-09
Identities = 33/95 (34%), Positives = 48/95 (50%), Gaps = 2/95 (2%)
Frame = +1
Query: 394 TLRCSLGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFEDEIXVERVT 573
T + +GGLP +T+ + +F YG V +V IMYDQ + GFGF+SF+ E V+ V
Sbjct: 109 TKKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVL 168
Query: 574 PRTLSXTSKGXXG*DKAAXEP--PDGSGXTPGXXG 672
+T S +A + P G G + G G
Sbjct: 169 HKTFHDLSGKQVEVKRALPKDANPGGGGRSMGGGG 203
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/54 (33%), Positives = 29/54 (53%)
Frame = +1
Query: 409 LGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFEDEIXVERV 570
+GG+ E L F YG+V + ++M D+ + GFGF+ F D ++RV
Sbjct: 10 VGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRV 63
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 89.8 bits (213), Expect = 2e-18
Identities = 39/81 (48%), Positives = 58/81 (71%)
Frame = +3
Query: 120 EKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLV 299
E KLF+GG+SWETS++ L+ YF +GEV++ V+MK+ +GR+RGFGFV FADP++ V
Sbjct: 4 ESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERV 63
Query: 300 LQNGPHQLDGRTIDPKPCNPR 362
+ H +DG+ ++ K PR
Sbjct: 64 VLL-KHIIDGKIVEAKKAVPR 83
Score = 66.5 bits (155), Expect = 2e-11
Identities = 28/80 (35%), Positives = 51/80 (63%)
Frame = +3
Query: 129 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN 308
K+FVGGL+ ++ ++YF+++G + D VVM + + R RGFGF+++ V+ VLQ
Sbjct: 107 KIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQK 166
Query: 309 GPHQLDGRTIDPKPCNPRTL 368
H+L+G+ ++ K P+ +
Sbjct: 167 TFHELNGKMVEVKLAVPKDM 186
Score = 59.3 bits (137), Expect = 4e-09
Identities = 23/58 (39%), Positives = 40/58 (68%)
Frame = +1
Query: 409 LGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFEDEIXVERVTPRT 582
+GGL S+VTE + +F ++G + +VV+MYD ++ GFGF+S++ E V++V +T
Sbjct: 110 VGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKT 167
Score = 45.6 bits (103), Expect = 5e-05
Identities = 21/61 (34%), Positives = 36/61 (59%)
Frame = +1
Query: 388 VDTLRCSLGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFEDEIXVER 567
+++ + +GG+ +E L +F +G+V+E VIM D+ ++ GFGF+ F D ER
Sbjct: 3 MESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAER 62
Query: 568 V 570
V
Sbjct: 63 V 63
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 89.8 bits (213), Expect = 2e-18
Identities = 39/81 (48%), Positives = 58/81 (71%)
Frame = +3
Query: 120 EKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLV 299
E KLF+GG+SWETS++ L+ YF +GEV++ V+MK+ +GR+RGFGFV FADP++ V
Sbjct: 4 ESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERV 63
Query: 300 LQNGPHQLDGRTIDPKPCNPR 362
+ H +DG+ ++ K PR
Sbjct: 64 VLL-KHIIDGKIVEAKKAVPR 83
Score = 66.5 bits (155), Expect = 2e-11
Identities = 28/80 (35%), Positives = 51/80 (63%)
Frame = +3
Query: 129 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN 308
K+FVGGL+ ++ ++YF+++G + D VVM + + R RGFGF+++ V+ VLQ
Sbjct: 107 KIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQK 166
Query: 309 GPHQLDGRTIDPKPCNPRTL 368
H+L+G+ ++ K P+ +
Sbjct: 167 TFHELNGKMVEVKLAVPKDM 186
Score = 59.3 bits (137), Expect = 4e-09
Identities = 23/58 (39%), Positives = 40/58 (68%)
Frame = +1
Query: 409 LGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFEDEIXVERVTPRT 582
+GGL S+VTE + +F ++G + +VV+MYD ++ GFGF+S++ E V++V +T
Sbjct: 110 VGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKT 167
Score = 45.6 bits (103), Expect = 5e-05
Identities = 21/61 (34%), Positives = 36/61 (59%)
Frame = +1
Query: 388 VDTLRCSLGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFEDEIXVER 567
+++ + +GG+ +E L +F +G+V+E VIM D+ ++ GFGF+ F D ER
Sbjct: 3 MESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAER 62
Query: 568 V 570
V
Sbjct: 63 V 63
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 87.4 bits (207), Expect = 1e-17
Identities = 40/79 (50%), Positives = 53/79 (67%)
Frame = +3
Query: 126 GKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQ 305
GKLFVGG+SWET+ E YF ++GEV+D V+M + +G RGFGFVTFAD ++ VL+
Sbjct: 66 GKLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLE 125
Query: 306 NGPHQLDGRTIDPKPCNPR 362
H +D R +D K PR
Sbjct: 126 E-DHVIDDRKVDLKRTLPR 143
Score = 63.7 bits (148), Expect = 2e-10
Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Frame = +3
Query: 129 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN 308
K+FVGGL ++ L+ YF YG++I+ +M + +GRSRGFGFVTF V+ + +
Sbjct: 158 KIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSD 217
Query: 309 GP-HQLDGRTIDPKPCNPR 362
G H+L + ++ K P+
Sbjct: 218 GKVHELGDKQVEIKRAEPK 236
Score = 50.8 bits (116), Expect = 1e-06
Identities = 24/59 (40%), Positives = 37/59 (62%)
Frame = +1
Query: 394 TLRCSLGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFEDEIXVERV 570
T + +GGLP + E +L +F YG ++E IMYD +S GFGF++F+ E V+R+
Sbjct: 156 TRKIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRL 214
Score = 43.6 bits (98), Expect = 2e-04
Identities = 19/54 (35%), Positives = 31/54 (57%)
Frame = +1
Query: 409 LGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFEDEIXVERV 570
+GG+ T +FG++G+V++ VIM D+ GFGF++F D E+V
Sbjct: 70 VGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKV 123
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 82.6 bits (195), Expect = 3e-16
Identities = 37/82 (45%), Positives = 58/82 (70%)
Frame = +3
Query: 117 DEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNL 296
D GK+FVGGL+ ET+ ++F +YGE+ D V+MK+ ++G+ RGFGFVT+AD S+V+
Sbjct: 39 DSAGKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDK 98
Query: 297 VLQNGPHQLDGRTIDPKPCNPR 362
V+Q+ H + G+ ++ K PR
Sbjct: 99 VIQDN-HIIIGKQVEIKRTIPR 119
Score = 60.9 bits (141), Expect = 1e-09
Identities = 27/85 (31%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Frame = +3
Query: 111 DDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLV 290
+D + K+FVGG+ + + +F ++GE+ + +M++ +GRSRGFGFVT+ +V
Sbjct: 125 NDFKTKKIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMV 184
Query: 291 NLVLQNGPH-QLDGRTIDPKPCNPR 362
+ +L G +L G ++ K P+
Sbjct: 185 DHLLAKGNRIELSGTQVEIKKAEPK 209
Score = 48.0 bits (109), Expect = 9e-06
Identities = 33/117 (28%), Positives = 50/117 (42%), Gaps = 2/117 (1%)
Frame = +1
Query: 394 TLRCSLGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFEDEIXVERVT 573
T + +GG+PS+V + + FF ++G++ E IM D +S GFGF+++E E V+ +
Sbjct: 129 TKKIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLL 188
Query: 574 PRTLSXTSKGXXG*DKAAXEPPDGSGXTPG--XXGXRPGRXAPXXXAXGXGXAGGPG 738
+ G K A S TP R G G GG G
Sbjct: 189 AKGNRIELSGTQVEIKKAEPKKPNSVTTPSKRFGDSRSNFGGGYGDGYGGGHGGGYG 245
Score = 46.0 bits (104), Expect = 4e-05
Identities = 19/54 (35%), Positives = 32/54 (59%)
Frame = +1
Query: 409 LGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFEDEIXVERV 570
+GGL T + FG+YG++ + VIM D+ + GFGF+++ D V++V
Sbjct: 46 VGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKV 99
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 82.2 bits (194), Expect = 4e-16
Identities = 37/95 (38%), Positives = 58/95 (61%)
Frame = +3
Query: 96 MNPDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFA 275
+N D K+FVGGL+WET E L+++F +YGE+++ VV+ + +GRS+G+GFVTF
Sbjct: 14 LNSPFGDTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFR 73
Query: 276 DPSLVNLVLQNGPHQLDGRTIDPKPCNPRTLQKPK 380
DP + +DGR + CN +L +P+
Sbjct: 74 DPEAARRACADPTPIIDGRRAN---CNLASLGRPR 105
Score = 39.5 bits (88), Expect = 0.003
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = +1
Query: 409 LGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFED 549
+GGL L F +YG+++E V++ D+ +S G+GF++F D
Sbjct: 28 VGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRD 74
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 80.6 bits (190), Expect = 1e-15
Identities = 38/94 (40%), Positives = 63/94 (67%)
Frame = +3
Query: 111 DDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLV 290
D GK+F+GGL +T+ ++F +YGE+ D V+M++ +G+ RGFGF+TFADPS+V
Sbjct: 14 DGASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVV 73
Query: 291 NLVLQNGPHQLDGRTIDPKPCNPRTLQKPKRGGG 392
+ V+++ H ++G+ ++ K RT+ PK GG
Sbjct: 74 DKVIED-THVINGKQVEIK----RTI--PKGAGG 100
Score = 60.1 bits (139), Expect = 2e-09
Identities = 33/110 (30%), Positives = 62/110 (56%), Gaps = 3/110 (2%)
Frame = +3
Query: 114 DDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVN 293
D + K+FVGG+ +++ L+ +F++YG V++ V+++ E+ RSRGFGFV F +V+
Sbjct: 105 DIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVD 164
Query: 294 LVLQNGPH-QLDGRTIDPKPCNPRTL--QKPKRGGGYPKVFLGRAAIERY 434
+L G + ++ K P+ + P G +P+ GR++ + Y
Sbjct: 165 ELLSKGNMIDMADTQVEIKKAEPKKSLNRSPPSYGSHPR---GRSSNDSY 211
Score = 59.3 bits (137), Expect = 4e-09
Identities = 38/121 (31%), Positives = 57/121 (47%), Gaps = 1/121 (0%)
Frame = +1
Query: 373 NRNVAVDTLRCSLGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFEDE 552
N++ + T + +GG+PS VTE +L FF +YG V+E ++ D +S GFGF+ F+ E
Sbjct: 101 NQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSE 160
Query: 553 IXVERVTPRTLSXTSKGXXG*DKAAXEPPDGSGXTPGXXGXRP-GRXAPXXXAXGXGXAG 729
V+ + + K A EP +P G P GR + A G G
Sbjct: 161 EVVDELLSKGNMIDMADTQVEIKKA-EPKKSLNRSPPSYGSHPRGRSSNDSYASYGGPYG 219
Query: 730 G 732
G
Sbjct: 220 G 220
Score = 48.4 bits (110), Expect = 7e-06
Identities = 22/58 (37%), Positives = 34/58 (58%)
Frame = +1
Query: 409 LGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFEDEIXVERVTPRT 582
+GGL + T T FG+YG++ + VIM D+ + GFGF++F D V++V T
Sbjct: 23 IGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIEDT 80
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 80.6 bits (190), Expect = 1e-15
Identities = 38/94 (40%), Positives = 63/94 (67%)
Frame = +3
Query: 111 DDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLV 290
D GK+F+GGL +T+ ++F +YGE+ D V+M++ +G+ RGFGF+TFADPS+V
Sbjct: 14 DGASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVV 73
Query: 291 NLVLQNGPHQLDGRTIDPKPCNPRTLQKPKRGGG 392
+ V+++ H ++G+ ++ K RT+ PK GG
Sbjct: 74 DKVIED-THVINGKQVEIK----RTI--PKGAGG 100
Score = 58.4 bits (135), Expect = 6e-09
Identities = 25/66 (37%), Positives = 44/66 (66%)
Frame = +3
Query: 114 DDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVN 293
D + K+FVGG+ +++ L+ +F++YG V++ V+++ E+ RSRGFGFV F +V+
Sbjct: 105 DIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVD 164
Query: 294 LVLQNG 311
+L G
Sbjct: 165 ELLSKG 170
Score = 56.8 bits (131), Expect = 2e-08
Identities = 25/66 (37%), Positives = 41/66 (62%)
Frame = +1
Query: 373 NRNVAVDTLRCSLGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFEDE 552
N++ + T + +GG+PS VTE +L FF +YG V+E ++ D +S GFGF+ F+ E
Sbjct: 101 NQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSE 160
Query: 553 IXVERV 570
V+ +
Sbjct: 161 EVVDEL 166
Score = 48.4 bits (110), Expect = 7e-06
Identities = 22/58 (37%), Positives = 34/58 (58%)
Frame = +1
Query: 409 LGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFEDEIXVERVTPRT 582
+GGL + T T FG+YG++ + VIM D+ + GFGF++F D V++V T
Sbjct: 23 IGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIEDT 80
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 80.2 bits (189), Expect = 2e-15
Identities = 38/96 (39%), Positives = 60/96 (62%), Gaps = 2/96 (2%)
Frame = +3
Query: 99 NPDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD 278
N + D + K+FVGGL+WET ++ ++RYF ++GE+++ VV+ + +GRS+G+GFVTF +
Sbjct: 13 NNNTTDTKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKE 72
Query: 279 PSLVNLVLQNGPHQLDGRTIDPKPCNPRTL--QKPK 380
QN +DGR + CN L QKP+
Sbjct: 73 AEAAMRACQNMNPVIDGRRAN---CNLACLGAQKPR 105
Score = 36.7 bits (81), Expect = 0.022
Identities = 13/47 (27%), Positives = 30/47 (63%)
Frame = +1
Query: 409 LGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFED 549
+GGL + +F ++G+++E V++ D+ +S G+GF++F++
Sbjct: 26 VGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKE 72
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 79.0 bits (186), Expect = 4e-15
Identities = 37/88 (42%), Positives = 56/88 (63%)
Frame = +3
Query: 129 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN 308
+ FVGGL+W T+ E+LQR FS++G+VID ++ + ESGRSRGFGFVTF D +++
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEK----AMRD 62
Query: 309 GPHQLDGRTIDPKPCNPRTLQKPKRGGG 392
+++G+ +D + Q GGG
Sbjct: 63 AIEEMNGKELDGRVITVNEAQSRGSGGG 90
Score = 45.2 bits (102), Expect = 6e-05
Identities = 20/51 (39%), Positives = 32/51 (62%)
Frame = +1
Query: 400 RCSLGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFEDE 552
RC +GGL + DL F ++G V++ I+ D+ +S GFGF++F+DE
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDE 57
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 79.0 bits (186), Expect = 4e-15
Identities = 37/88 (42%), Positives = 56/88 (63%)
Frame = +3
Query: 129 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN 308
+ FVGGL+W T+ E+LQR FS++G+VID ++ + ESGRSRGFGFVTF D +++
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEK----AMRD 62
Query: 309 GPHQLDGRTIDPKPCNPRTLQKPKRGGG 392
+++G+ +D + Q GGG
Sbjct: 63 AIEEMNGKELDGRVITVNEAQSRGSGGG 90
Score = 46.8 bits (106), Expect = 2e-05
Identities = 35/114 (30%), Positives = 50/114 (43%), Gaps = 1/114 (0%)
Frame = +1
Query: 400 RCSLGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFEDEIXVERVTPR 579
RC +GGL + DL F ++G V++ I+ D+ +S GFGF++F+DE + +
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDE---KAMRDA 63
Query: 580 TLSXTSKGXXG*DKAAXEPPD-GSGXTPGXXGXRPGRXAPXXXAXGXGXAGGPG 738
K G E GSG G G R G G G +GG G
Sbjct: 64 IEEMNGKELDGRVITVNEAQSRGSG---GGGGGRGGSGGGYRSGGGGGYSGGGG 114
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 79.0 bits (186), Expect = 4e-15
Identities = 37/88 (42%), Positives = 56/88 (63%)
Frame = +3
Query: 129 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN 308
+ FVGGL+W T+ E+LQR FS++G+VID ++ + ESGRSRGFGFVTF D +++
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEK----AMRD 62
Query: 309 GPHQLDGRTIDPKPCNPRTLQKPKRGGG 392
+++G+ +D + Q GGG
Sbjct: 63 AIEEMNGKELDGRVITVNEAQSRGSGGG 90
Score = 48.0 bits (109), Expect = 9e-06
Identities = 35/122 (28%), Positives = 51/122 (41%), Gaps = 3/122 (2%)
Frame = +1
Query: 400 RCSLGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFEDEIXVERVTPR 579
RC +GGL + DL F ++G V++ I+ D+ +S GFGF++F+DE +
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 580 TLSXTSKG-XXG*DKAAXEPPDGSGXTPG--XXGXRPGRXAPXXXAXGXGXAGGPGXAPX 750
G ++A G G G G R G G G +GG G
Sbjct: 67 MNGKELDGRVITVNEAQSRGSGGGGGGRGGSGGGYRSGGGGGYSGGGGGGYSGGGGGGYE 126
Query: 751 RR 756
RR
Sbjct: 127 RR 128
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 79.0 bits (186), Expect = 4e-15
Identities = 36/95 (37%), Positives = 57/95 (60%)
Frame = +3
Query: 96 MNPDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFA 275
+N D K+FVGGL+WET E L+R+F +YG++++ VV+ + +GRS+G+GFVTF
Sbjct: 14 LNSPFGDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFR 73
Query: 276 DPSLVNLVLQNGPHQLDGRTIDPKPCNPRTLQKPK 380
DP + +DGR + CN +L + +
Sbjct: 74 DPEAARRACVDPTPIIDGRRAN---CNLASLGRSR 105
Score = 38.7 bits (86), Expect = 0.005
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +1
Query: 409 LGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFED 549
+GGL L F +YG ++E V++ D+ +S G+GF++F D
Sbjct: 28 VGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRD 74
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 77.8 bits (183), Expect = 9e-15
Identities = 32/75 (42%), Positives = 50/75 (66%)
Frame = +3
Query: 108 MDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSL 287
M+D K+FVGGL+WET + +L+ YF ++G++++ VV+ + SGRS+G+GFVTF DP
Sbjct: 1 MEDTTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEA 60
Query: 288 VNLVLQNGPHQLDGR 332
+ +DGR
Sbjct: 61 AQKACVDPAPVIDGR 75
Score = 37.5 bits (83), Expect = 0.012
Identities = 15/47 (31%), Positives = 29/47 (61%)
Frame = +1
Query: 409 LGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFED 549
+GGL + L +F ++G ++E V++ D+ +S G+GF++F D
Sbjct: 11 VGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCD 57
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 77.8 bits (183), Expect = 9e-15
Identities = 32/75 (42%), Positives = 50/75 (66%)
Frame = +3
Query: 108 MDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSL 287
M+D K+FVGGL+WET + +L+ YF ++G++++ VV+ + SGRS+G+GFVTF DP
Sbjct: 1 MEDTTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEA 60
Query: 288 VNLVLQNGPHQLDGR 332
+ +DGR
Sbjct: 61 AQKACVDPAPVIDGR 75
Score = 37.5 bits (83), Expect = 0.012
Identities = 15/47 (31%), Positives = 29/47 (61%)
Frame = +1
Query: 409 LGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFED 549
+GGL + L +F ++G ++E V++ D+ +S G+GF++F D
Sbjct: 11 VGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCD 57
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 74.1 bits (174), Expect = 1e-13
Identities = 37/89 (41%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Frame = +3
Query: 129 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVL-Q 305
KLF+GGLSW T +L+ F+ +G+V+D V+ + E+GRSRGFGFV F D + +
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 306 NGPHQLDGRTIDPKPCNPRTLQKPKRGGG 392
+L+GR I P N R GGG
Sbjct: 96 MDGKELNGRHIRVNPANDRPSAPRAYGGG 124
Score = 38.7 bits (86), Expect = 0.005
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +1
Query: 409 LGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFEDE 552
+GGL + L F +G V++ ++ D+ +S GFGF++F DE
Sbjct: 39 IGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDE 86
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 74.1 bits (174), Expect = 1e-13
Identities = 37/89 (41%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Frame = +3
Query: 129 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVL-Q 305
KLF+GGLSW T +L+ F+ +G+V+D V+ + E+GRSRGFGFV F D + +
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 306 NGPHQLDGRTIDPKPCNPRTLQKPKRGGG 392
+L+GR I P N R GGG
Sbjct: 96 MDGKELNGRHIRVNPANDRPSAPRAYGGG 124
Score = 38.7 bits (86), Expect = 0.005
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +1
Query: 409 LGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFEDE 552
+GGL + L F +G V++ ++ D+ +S GFGF++F DE
Sbjct: 39 IGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDE 86
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 74.1 bits (174), Expect = 1e-13
Identities = 32/74 (43%), Positives = 48/74 (64%)
Frame = +3
Query: 114 DDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVN 293
D K+FVG L+W T+ ++L+RYF ++G+V+D V+ + GRS+G+GF+TF D
Sbjct: 8 DTRVTKIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTV 67
Query: 294 LVLQNGPHQLDGRT 335
LQN +DGRT
Sbjct: 68 RALQNSKPIIDGRT 81
Score = 36.7 bits (81), Expect = 0.022
Identities = 15/53 (28%), Positives = 30/53 (56%)
Frame = +1
Query: 409 LGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFEDEIXVER 567
+G L T DL +F ++G+V++ ++ + +S G+GF++F D + R
Sbjct: 16 VGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTVR 68
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 74.1 bits (174), Expect = 1e-13
Identities = 37/107 (34%), Positives = 62/107 (57%), Gaps = 7/107 (6%)
Frame = +3
Query: 114 DDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVN 293
D K+FVGGL+WET + ++RYF ++GE+++ V++ + +G+S+G+GFVTF D
Sbjct: 13 DTTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSAT 72
Query: 294 LVLQNGPHQLDGRTIDPKPCNPRTLQKPK----RG---GGYPKVFLG 413
+ + +DGR + CN + +P+ RG GG P + G
Sbjct: 73 RAVADPNPVIDGRKAN---CNIASFGRPRPSTPRGRGQGGSPSQYQG 116
Score = 41.1 bits (92), Expect = 0.001
Identities = 16/47 (34%), Positives = 30/47 (63%)
Frame = +1
Query: 409 LGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFED 549
+GGL ++ +F ++G+++E VI+ D+ KS G+GF++F D
Sbjct: 21 VGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRD 67
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 73.3 bits (172), Expect = 2e-13
Identities = 36/90 (40%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Frame = +3
Query: 129 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN 308
KLF+GG+++ +++L+ F++YGEV+D V+ + E+GRSRGFGFVTF + +Q
Sbjct: 41 KLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQA 100
Query: 309 -GPHQLDGRTIDPKPCNPRTLQKPKRGGGY 395
L GR + N RT GGGY
Sbjct: 101 LDGRDLHGRVVKVNYANDRTSGGGFGGGGY 130
Score = 37.9 bits (84), Expect = 0.009
Identities = 15/45 (33%), Positives = 29/45 (64%)
Frame = +1
Query: 409 LGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSF 543
+GG+ ++ E L F +YG+V++ ++ D+ +S GFGF++F
Sbjct: 44 IGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTF 88
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 73.3 bits (172), Expect = 2e-13
Identities = 31/50 (62%), Positives = 41/50 (82%)
Frame = +3
Query: 129 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD 278
+ FVGGL+W T+ E+LQR FS++G+VID ++ + ESGRSRGFGFVTF D
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKD 56
Score = 45.6 bits (103), Expect = 5e-05
Identities = 28/95 (29%), Positives = 44/95 (46%)
Frame = +1
Query: 400 RCSLGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFEDEIXVERVTPR 579
RC +GGL + DL F ++G V++ I+ D+ +S GFGF++F+DE R
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDE-KAMRDAIE 65
Query: 580 TLSXTSKGXXG*DKAAXEPPDGSGXTPGXXGXRPG 684
++ + G G +G G G G G
Sbjct: 66 EMNGSGGGGGGRGYGGGGRREGGGYGGGDGGSYGG 100
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 72.9 bits (171), Expect = 3e-13
Identities = 32/89 (35%), Positives = 50/89 (56%)
Frame = +3
Query: 114 DDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVN 293
D + +FV GL W+T+ ENL+ F YGE+ +C V+ + ++GR++GFGFV F
Sbjct: 159 DSSQRNIFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGAR 218
Query: 294 LVLQNGPHQLDGRTIDPKPCNPRTLQKPK 380
L+N ++ RT+ P P KP+
Sbjct: 219 AALKNPEKRMYNRTVSCLPARPFNSGKPR 247
Score = 35.5 bits (78), Expect = 0.050
Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Frame = +1
Query: 310 DLINLMAGPSTL-SRAILALFKNRNVAVDTLRCSLGGLPSNVTETDLXVFFGRYGKVMEV 486
+LINL+ + S+ I A+F++ + + GL + T +L F YG++ E
Sbjct: 133 ELINLIYKTAEKGSKLISAVFESADRDSSQRNIFVRGLGWDTTHENLKAAFEVYGEITEC 192
Query: 487 VIMYDQXKKKSXGFGFLSFE 546
++ D+ ++ GFGF+ F+
Sbjct: 193 SVVMDKDTGRAKGFGFVLFK 212
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 72.5 bits (170), Expect = 4e-13
Identities = 33/100 (33%), Positives = 58/100 (58%), Gaps = 5/100 (5%)
Frame = +3
Query: 111 DDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLV 290
D + + ++FVGGLSW+ ++ L+ F RYG++ +C +M ++GR RGFGF+TF D
Sbjct: 7 DGNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGA 66
Query: 291 NLVLQN-GPHQLDGRTIDPKPCNPRT----LQKPKRGGGY 395
+ +++ +L + I P+ + + K+GGGY
Sbjct: 67 DDAIKHMHGRELGNKVISVNKAEPKVGGEDVDQLKKGGGY 106
Score = 45.2 bits (102), Expect = 6e-05
Identities = 22/50 (44%), Positives = 29/50 (58%)
Frame = +1
Query: 400 RCSLGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFED 549
R +GGL +VTE L F RYGK+ E IM + + GFGF++F D
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTD 62
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 72.5 bits (170), Expect = 4e-13
Identities = 33/100 (33%), Positives = 58/100 (58%), Gaps = 5/100 (5%)
Frame = +3
Query: 111 DDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLV 290
D + + ++FVGGLSW+ ++ L+ F RYG++ +C +M ++GR RGFGF+TF D
Sbjct: 7 DGNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGA 66
Query: 291 NLVLQN-GPHQLDGRTIDPKPCNPRT----LQKPKRGGGY 395
+ +++ +L + I P+ + + K+GGGY
Sbjct: 67 DDAIKHMHGRELGNKVISVNKAEPKVGGEDVDQLKKGGGY 106
Score = 45.2 bits (102), Expect = 6e-05
Identities = 22/50 (44%), Positives = 29/50 (58%)
Frame = +1
Query: 400 RCSLGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFED 549
R +GGL +VTE L F RYGK+ E IM + + GFGF++F D
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTD 62
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 72.5 bits (170), Expect = 4e-13
Identities = 36/102 (35%), Positives = 58/102 (56%), Gaps = 7/102 (6%)
Frame = +3
Query: 108 MDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSL 287
+ D K+FVGGL+WET +E ++++F ++GE+++ VV+ + SGRS+G+GFVTF +
Sbjct: 7 LGDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEA 66
Query: 288 VNLVLQNGPHQLDGRTIDPKPCNPRTL-------QKPKRGGG 392
+ +DGR + CN +L P GGG
Sbjct: 67 ARSACVDATPVIDGRRAN---CNLASLGLQRSKPSTPNHGGG 105
Score = 35.9 bits (79), Expect = 0.038
Identities = 13/47 (27%), Positives = 29/47 (61%)
Frame = +1
Query: 409 LGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFED 549
+GGL + + F ++G+++E V++ D+ +S G+GF++F +
Sbjct: 17 VGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFRE 63
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 72.5 bits (170), Expect = 4e-13
Identities = 36/102 (35%), Positives = 58/102 (56%), Gaps = 7/102 (6%)
Frame = +3
Query: 108 MDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSL 287
+ D K+FVGGL+WET +E ++++F ++GE+++ VV+ + SGRS+G+GFVTF +
Sbjct: 7 LGDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEA 66
Query: 288 VNLVLQNGPHQLDGRTIDPKPCNPRTL-------QKPKRGGG 392
+ +DGR + CN +L P GGG
Sbjct: 67 ARSACVDATPVIDGRRAN---CNLASLGLQRSKPSTPNHGGG 105
Score = 35.9 bits (79), Expect = 0.038
Identities = 13/47 (27%), Positives = 29/47 (61%)
Frame = +1
Query: 409 LGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFED 549
+GGL + + F ++G+++E V++ D+ +S G+GF++F +
Sbjct: 17 VGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFRE 63
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 72.5 bits (170), Expect = 4e-13
Identities = 36/102 (35%), Positives = 58/102 (56%), Gaps = 7/102 (6%)
Frame = +3
Query: 108 MDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSL 287
+ D K+FVGGL+WET +E ++++F ++GE+++ VV+ + SGRS+G+GFVTF +
Sbjct: 7 LGDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEA 66
Query: 288 VNLVLQNGPHQLDGRTIDPKPCNPRTL-------QKPKRGGG 392
+ +DGR + CN +L P GGG
Sbjct: 67 ARSACVDATPVIDGRRAN---CNLASLGLQRSKPSTPNHGGG 105
Score = 35.9 bits (79), Expect = 0.038
Identities = 13/47 (27%), Positives = 29/47 (61%)
Frame = +1
Query: 409 LGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFED 549
+GGL + + F ++G+++E V++ D+ +S G+GF++F +
Sbjct: 17 VGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFRE 63
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 72.1 bits (169), Expect = 5e-13
Identities = 29/53 (54%), Positives = 42/53 (79%)
Frame = +3
Query: 120 EKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD 278
E ++FVGGLS E + +L+R FSR+G+++DC +M ++GRSRGFGF+TFAD
Sbjct: 5 EGSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFAD 57
Score = 47.6 bits (108), Expect = 1e-05
Identities = 36/118 (30%), Positives = 52/118 (44%)
Frame = +1
Query: 400 RCSLGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFEDEIXVERVTPR 579
R +GGL VT+ DL F R+G +++ IM ++ +S GFGF++F D ++ + R
Sbjct: 8 RIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDE-SIR 66
Query: 580 TLSXTSKGXXG*DKAAXEPPDGSGXTPGXXGXRPGRXAPXXXAXGXGXAGGPGXAPXR 753
+ G EP G G R GR + A G G GG G R
Sbjct: 67 EMHGRDFGDRVISVNRAEPKLGRDDGES-HGSRGGRDSGYSIA-GKGSFGGGGGGGGR 122
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 72.1 bits (169), Expect = 5e-13
Identities = 29/84 (34%), Positives = 54/84 (64%)
Frame = +3
Query: 129 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN 308
K+FVGGL+WET + ++RYF ++GE+++ V++ + +G+S+G+GFVTF + + +
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVAD 77
Query: 309 GPHQLDGRTIDPKPCNPRTLQKPK 380
+DGR + CN + +P+
Sbjct: 78 PNPVIDGRKAN---CNIASFGRPR 98
Score = 39.1 bits (87), Expect = 0.004
Identities = 15/47 (31%), Positives = 30/47 (63%)
Frame = +1
Query: 409 LGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFED 549
+GGL ++ +F ++G+++E VI+ D+ KS G+GF++F +
Sbjct: 21 VGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRE 67
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 72.1 bits (169), Expect = 5e-13
Identities = 29/84 (34%), Positives = 54/84 (64%)
Frame = +3
Query: 129 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN 308
K+FVGGL+WET + ++RYF ++GE+++ V++ + +G+S+G+GFVTF + + +
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVAD 77
Query: 309 GPHQLDGRTIDPKPCNPRTLQKPK 380
+DGR + CN + +P+
Sbjct: 78 PNPVIDGRKAN---CNIASFGRPR 98
Score = 39.1 bits (87), Expect = 0.004
Identities = 15/47 (31%), Positives = 30/47 (63%)
Frame = +1
Query: 409 LGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFED 549
+GGL ++ +F ++G+++E VI+ D+ KS G+GF++F +
Sbjct: 21 VGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRE 67
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 72.1 bits (169), Expect = 5e-13
Identities = 36/76 (47%), Positives = 53/76 (69%)
Frame = +3
Query: 114 DDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVN 293
D ++ KLFVGG++ ETS+E L++YFSRYG V++ VV K +G+ RGFGFV FA+ V
Sbjct: 2 DYDRYKLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVV 61
Query: 294 LVLQNGPHQLDGRTID 341
L++ H + G+ +D
Sbjct: 62 KALRD-THFILGKPVD 76
Score = 72.1 bits (169), Expect = 5e-13
Identities = 32/78 (41%), Positives = 48/78 (61%)
Frame = +3
Query: 129 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN 308
K+FVGGLS T++E + YF R+G D VVM + + R RGFGFVT+ V +V+Q+
Sbjct: 121 KIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQS 180
Query: 309 GPHQLDGRTIDPKPCNPR 362
H+L + ++ K P+
Sbjct: 181 NFHELSDKRVEVKRAIPK 198
Score = 53.6 bits (123), Expect = 2e-07
Identities = 24/66 (36%), Positives = 39/66 (59%)
Frame = +1
Query: 373 NRNVAVDTLRCSLGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFEDE 552
+ V T + +GGL SN TE + +F R+G+ +VV+M+D + GFGF++++ E
Sbjct: 112 SNGVTSRTKKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSE 171
Query: 553 IXVERV 570
VE V
Sbjct: 172 DSVEVV 177
Score = 43.6 bits (98), Expect = 2e-04
Identities = 19/57 (33%), Positives = 31/57 (54%)
Frame = +1
Query: 391 DTLRCSLGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFEDEIXV 561
D + +GG+ +E L +F RYG V+E V+ ++ K GFGF+ F ++ V
Sbjct: 4 DRYKLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDV 60
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 71.3 bits (167), Expect = 8e-13
Identities = 35/76 (46%), Positives = 50/76 (65%), Gaps = 2/76 (2%)
Frame = +3
Query: 117 DEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNL 296
D + + FVGGL+W T L+ F++YG+VID ++ + E+GRSRGFGFVTF D +
Sbjct: 5 DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKD 64
Query: 297 VLQ--NGPHQLDGRTI 338
++ NG LDGR+I
Sbjct: 65 AIEGMNG-QDLDGRSI 79
Score = 44.0 bits (99), Expect = 1e-04
Identities = 20/51 (39%), Positives = 31/51 (60%)
Frame = +1
Query: 400 RCSLGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFEDE 552
RC +GGL + L F +YG V++ I+ D+ +S GFGF++F+DE
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDE 59
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 71.3 bits (167), Expect = 8e-13
Identities = 35/76 (46%), Positives = 50/76 (65%), Gaps = 2/76 (2%)
Frame = +3
Query: 117 DEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNL 296
D + + FVGGL+W T L+ F++YG+VID ++ + E+GRSRGFGFVTF D +
Sbjct: 5 DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKD 64
Query: 297 VLQ--NGPHQLDGRTI 338
++ NG LDGR+I
Sbjct: 65 AIEGMNG-QDLDGRSI 79
Score = 45.2 bits (102), Expect = 6e-05
Identities = 34/114 (29%), Positives = 49/114 (42%), Gaps = 1/114 (0%)
Frame = +1
Query: 400 RCSLGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFEDEIXVERVTPR 579
RC +GGL + L F +YG V++ I+ D+ +S GFGF++F+DE + +
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDE---KAMKDA 65
Query: 580 TLSXTSKGXXG*DKAAXEPPD-GSGXTPGXXGXRPGRXAPXXXAXGXGXAGGPG 738
+ G E GSG G G R G G G +GG G
Sbjct: 66 IEGMNGQDLDGRSITVNEAQSRGSG---GGGGHRGGGGGGYRSGGGGGYSGGGG 116
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 70.5 bits (165), Expect = 1e-12
Identities = 40/119 (33%), Positives = 68/119 (57%), Gaps = 1/119 (0%)
Frame = +3
Query: 129 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN 308
KL V G+ W+ + L+ Y S++G++ DC+VMK+ +GRSRGFG+VTFA L+
Sbjct: 4 KLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALK- 62
Query: 309 GPHQLDGRTIDPKPCNPR-TLQKPKRGGGYPKVFLGRAAIERYRNRSQXIFRTLWEGHG 482
G H L R ++ K P+ +++P + ++F+ R + S+ FR+ +E +G
Sbjct: 63 GEHFLGNRILEVKVATPKEEMRQPAK--KVTRIFVARIP----SSVSESDFRSHFERYG 115
Score = 57.2 bits (132), Expect = 1e-08
Identities = 29/86 (33%), Positives = 46/86 (53%)
Frame = +3
Query: 129 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN 308
K+FVG L E S ++L+ YF R+G + D + K+ + RGFGFVTFA+ + + V +
Sbjct: 241 KIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVADRVARR 300
Query: 309 GPHQLDGRTIDPKPCNPRTLQKPKRG 386
H++ G+ + P P G
Sbjct: 301 S-HEICGQEVAIDSATPLDEAGPSAG 325
Score = 52.0 bits (119), Expect = 5e-07
Identities = 25/85 (29%), Positives = 44/85 (51%)
Frame = +3
Query: 129 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN 308
++FV + S+ + + +F RYGE+ D + K+ S + RG GF+TF+ V ++++
Sbjct: 92 RIFVARIPSSVSESDFRSHFERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVEDLMED 151
Query: 309 GPHQLDGRTIDPKPCNPRTLQKPKR 383
H L G T+ P+ P R
Sbjct: 152 -THDLGGTTVAVDRATPKEDDHPPR 175
Score = 43.6 bits (98), Expect = 2e-04
Identities = 36/123 (29%), Positives = 53/123 (43%), Gaps = 2/123 (1%)
Frame = +1
Query: 376 RNVAVDTLRCSLGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFEDEI 555
R A R + +PS+V+E+D F RYG++ ++ + D K+ G GF++F
Sbjct: 84 RQPAKKVTRIFVARIPSSVSESDFRSHFERYGEITDLYMPKDYNSKQHRGIGFITFSSAD 143
Query: 556 XVERVTPRT--LSXTSKGXXG*DKAAXEPPDGSGXTPGXXGXRPGRXAPXXXAXGXGXAG 729
VE + T L T+ D+A + D P R R P A G G G
Sbjct: 144 SVEDLMEDTHDLGGTTVAV---DRATPKEDDHPPRPPPV--ARMSR-PPVAIAGGFGAPG 197
Query: 730 GPG 738
G G
Sbjct: 198 GYG 200
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/58 (32%), Positives = 31/58 (53%)
Frame = +1
Query: 409 LGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFEDEIXVERVTPRT 582
+G LP + DL +FGR+G + + I D + GFGF++F + +RV R+
Sbjct: 244 VGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVADRVARRS 301
Score = 33.1 bits (72), Expect = 0.26
Identities = 11/43 (25%), Positives = 26/43 (60%)
Frame = +1
Query: 415 GLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSF 543
G+P ++ L + ++G + + ++M D+ +S GFG+++F
Sbjct: 9 GIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTF 51
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 70.1 bits (164), Expect = 2e-12
Identities = 31/78 (39%), Positives = 47/78 (60%)
Frame = +3
Query: 114 DDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVN 293
+D + K++V GL W T E L YF R+GE++ V+ + + RS+GFGFVTF +
Sbjct: 5 NDRETKIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESAT 64
Query: 294 LVLQNGPHQLDGRTIDPK 347
+N H +DGRT++ K
Sbjct: 65 RACENPNHTIDGRTVNCK 82
Score = 34.3 bits (75), Expect = 0.11
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +1
Query: 409 LGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFED 549
+ GLP L +F R+G+++ ++ D ++S GFGF++F +
Sbjct: 13 VAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFRE 59
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 70.1 bits (164), Expect = 2e-12
Identities = 34/86 (39%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
Frame = +3
Query: 108 MDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSL 287
M +D + + F+GGL+W TS L+ F +YG +++ V+ + SGRSRGFGF+TF +
Sbjct: 1 MSEDPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKA 60
Query: 288 VN--LVLQNGPHQLDGRTIDPKPCNP 359
++ + NG LDGRTI P
Sbjct: 61 MDEAIAAMNG-MDLDGRTITVDKAQP 85
Score = 43.6 bits (98), Expect = 2e-04
Identities = 17/51 (33%), Positives = 32/51 (62%)
Frame = +1
Query: 400 RCSLGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFEDE 552
RC +GGL ++ L F +YG ++E ++ D+ +S GFGF++F+++
Sbjct: 8 RCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEK 58
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 70.1 bits (164), Expect = 2e-12
Identities = 39/94 (41%), Positives = 57/94 (60%), Gaps = 5/94 (5%)
Frame = +3
Query: 129 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFA-DPSLVNLVLQ 305
KLFVGGLSW T +L++ F+ +GEV + V+ + E+GRSRGFGFV+F+ + S N + +
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 306 NGPHQLDGRTIDPKPCNPRTLQKPKR----GGGY 395
+L+GR I R+ P+ GGGY
Sbjct: 96 MDGKELNGRQIRVNLATERS-SAPRSSFGGGGGY 128
Score = 37.1 bits (82), Expect = 0.016
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = +1
Query: 409 LGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFEDE 552
+GGL ++ L F +G+V E ++ D+ +S GFGF+SF E
Sbjct: 39 VGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCE 86
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 70.1 bits (164), Expect = 2e-12
Identities = 39/94 (41%), Positives = 57/94 (60%), Gaps = 5/94 (5%)
Frame = +3
Query: 129 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFA-DPSLVNLVLQ 305
KLFVGGLSW T +L++ F+ +GEV + V+ + E+GRSRGFGFV+F+ + S N + +
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 306 NGPHQLDGRTIDPKPCNPRTLQKPKR----GGGY 395
+L+GR I R+ P+ GGGY
Sbjct: 96 MDGKELNGRQIRVNLATERS-SAPRSSFGGGGGY 128
Score = 37.1 bits (82), Expect = 0.016
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = +1
Query: 409 LGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFEDE 552
+GGL ++ L F +G+V E ++ D+ +S GFGF+SF E
Sbjct: 39 VGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCE 86
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 68.9 bits (161), Expect = 4e-12
Identities = 32/76 (42%), Positives = 50/76 (65%), Gaps = 2/76 (2%)
Frame = +3
Query: 117 DEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNL 296
D + + FVGGL+W T +++++R F+ +GEV D ++ + E+GRS+GF FVTF D +
Sbjct: 41 DNEYRCFVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMRT 100
Query: 297 VL--QNGPHQLDGRTI 338
+ NG +LDGR I
Sbjct: 101 AIDRMNG-QELDGRNI 115
Score = 40.7 bits (91), Expect = 0.001
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Frame = +1
Query: 325 MAGPSTLSRAILALFKNRNVAV--DTLRCSLGGLPSNVTETDLXVFFGRYGKVMEVVIMY 498
M + + ++ K+ +VA + RC +GGL E + F +G+V + I+
Sbjct: 18 MLSTESTTVVVIIFLKSLDVAYADNEYRCFVGGLAWATDEQSIERCFNEFGEVFDSKIII 77
Query: 499 DQXKKKSXGFGFLSFEDE 552
D+ +S GF F++F+DE
Sbjct: 78 DRETGRSKGFRFVTFKDE 95
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 68.5 bits (160), Expect = 6e-12
Identities = 36/90 (40%), Positives = 49/90 (54%)
Frame = +3
Query: 129 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN 308
K+FVGG+S+ T + L+ FS+YGEV+D ++ + E+GRSRGF FVTF + +Q
Sbjct: 35 KIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQL 94
Query: 309 GPHQLDGRTIDPKPCNPRTLQKPKRGGGYP 398
L GR I R RG G P
Sbjct: 95 DGQDLHGRRIRVNYATERGSGFGGRGFGGP 124
Score = 35.5 bits (78), Expect = 0.050
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = +1
Query: 409 LGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSF 543
+GG+ + E L F +YG+V++ I+ D+ +S GF F++F
Sbjct: 38 VGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTF 82
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 66.9 bits (156), Expect = 2e-11
Identities = 40/92 (43%), Positives = 57/92 (61%), Gaps = 2/92 (2%)
Frame = +3
Query: 129 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF--ADPSLVNLVL 302
KLF+GGLS+ T+++ L FS+ G+V++ ++ + S RS+GFGFVTF AD + L+
Sbjct: 35 KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALME 94
Query: 303 QNGPHQLDGRTIDPKPCNPRTLQKPKRGGGYP 398
NG QL+GRTI + Q GGGYP
Sbjct: 95 FNG-QQLNGRTIFVDYAKAK--QSLGGGGGYP 123
Score = 38.7 bits (86), Expect = 0.005
Identities = 18/45 (40%), Positives = 27/45 (60%)
Frame = +1
Query: 409 LGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSF 543
+GGL TE L F + G+V+E I+ D+ +S GFGF++F
Sbjct: 38 IGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTF 82
>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 358
Score = 66.5 bits (155), Expect = 2e-11
Identities = 28/80 (35%), Positives = 51/80 (63%)
Frame = +3
Query: 129 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN 308
K+FVGGL+ ++ ++YF+++G + D VVM + + R RGFGF+++ V+ VLQ
Sbjct: 34 KIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQK 93
Query: 309 GPHQLDGRTIDPKPCNPRTL 368
H+L+G+ ++ K P+ +
Sbjct: 94 TFHELNGKMVEVKLAVPKDM 113
Score = 59.3 bits (137), Expect = 4e-09
Identities = 23/58 (39%), Positives = 40/58 (68%)
Frame = +1
Query: 409 LGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFEDEIXVERVTPRT 582
+GGL S+VTE + +F ++G + +VV+MYD ++ GFGF+S++ E V++V +T
Sbjct: 37 VGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKT 94
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 65.7 bits (153), Expect = 4e-11
Identities = 34/77 (44%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Frame = +3
Query: 129 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN 308
K+FVGGLS T E L+ F +G+++D VV+ + ESG SRGFGFVT+ + N +Q
Sbjct: 37 KIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQA 96
Query: 309 GPH-QLDGRTIDPKPCN 356
+ +LDGR I P +
Sbjct: 97 MQNKELDGRIIGVHPAD 113
Score = 39.9 bits (89), Expect = 0.002
Identities = 29/121 (23%), Positives = 48/121 (39%), Gaps = 1/121 (0%)
Frame = +1
Query: 379 NVAVDTLRCSLGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFED-EI 555
N+++ + +GGL + L FG +GK+++ V++ D+ S GFGF++++ E+
Sbjct: 30 NLSLTPSKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEV 89
Query: 556 XVERVTPRTLSXTSKGXXG*DKAAXEPPDGSGXTPGXXGXRPGRXAPXXXAXGXGXAGGP 735
+ G A G G G GR G G GG
Sbjct: 90 ANNAMQAMQNKELDGRIIGVHPADSGGGGGGGGFARRGGYGGGRGGYARGGFGRGGFGGG 149
Query: 736 G 738
G
Sbjct: 150 G 150
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 64.5 bits (150), Expect = 9e-11
Identities = 32/84 (38%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Frame = +3
Query: 117 DEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNL 296
D +++VG L W+ L+R FS +G+V+D V+ + E+GRSRGFGFV ++ + VN+
Sbjct: 204 DAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNV 263
Query: 297 VLQNGPHQ-LDGRTIDPKPCNPRT 365
+ Q L+GR I RT
Sbjct: 264 AIAALDGQNLEGRAIKVNVAEERT 287
Score = 45.6 bits (103), Expect = 5e-05
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Frame = +3
Query: 120 EKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLV 299
E+ KLFVG L ++ + L F + G V V+ N ++ +SRGFGFVT +
Sbjct: 111 EEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKA 170
Query: 300 LQN-GPHQLDGRTIDPKPCNPRTLQKPKR 383
++ +++GR + PR +P+R
Sbjct: 171 VEKFNSFEVNGRRLTVNRAAPRG-SRPER 198
Score = 36.7 bits (81), Expect = 0.022
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = +1
Query: 400 RCSLGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFEDE 552
R +G LP +V L F +GKV++ ++ D+ +S GFGF+ +E
Sbjct: 208 RIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNE 258
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 64.1 bits (149), Expect = 1e-10
Identities = 26/79 (32%), Positives = 49/79 (62%)
Frame = +3
Query: 96 MNPDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFA 275
+N D + K+FVGGL+W+T +E + +F +YG++++ V++ + + RS+G+GFVTF
Sbjct: 7 VNGCFGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFK 66
Query: 276 DPSLVNLVLQNGPHQLDGR 332
D ++ ++GR
Sbjct: 67 DAKAATRACEDSTPIINGR 85
Score = 39.5 bits (88), Expect = 0.003
Identities = 16/47 (34%), Positives = 31/47 (65%)
Frame = +1
Query: 409 LGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFED 549
+GGL + + + F +YG ++E VI+ D+ ++S G+GF++F+D
Sbjct: 21 VGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKD 67
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 63.7 bits (148), Expect = 2e-10
Identities = 37/103 (35%), Positives = 55/103 (53%)
Frame = +3
Query: 129 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN 308
KLF+GGLSW +++L+ FS +GEV + + + SGRSRGFGFV FA+ +
Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEG----DALS 97
Query: 309 GPHQLDGRTIDPKPCNPRTLQKPKRGGGYPKVFLGRAAIERYR 437
+DG+ + +P + RGG LG++ ER R
Sbjct: 98 AKDAMDGKGLLGRPLRISFALERVRGGPVVVPRLGKSKRERER 140
Score = 44.8 bits (101), Expect = 8e-05
Identities = 24/65 (36%), Positives = 35/65 (53%)
Frame = +1
Query: 358 LALFKNRNVAVDTLRCSLGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFL 537
L F + A + + +GGL +V E L F +G+V EV I YD+ +S GFGF+
Sbjct: 28 LPQFCTSSSASPSSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFV 87
Query: 538 SFEDE 552
F +E
Sbjct: 88 DFAEE 92
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 61.7 bits (143), Expect = 7e-10
Identities = 28/73 (38%), Positives = 44/73 (60%)
Frame = +3
Query: 129 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN 308
K++VGGL W T +E L +F R+GE+I V+ + E+ RS+G+GFVTF D ++
Sbjct: 14 KIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACKD 73
Query: 309 GPHQLDGRTIDPK 347
++GR + K
Sbjct: 74 PNPTIEGRITNCK 86
Score = 42.7 bits (96), Expect = 3e-04
Identities = 17/47 (36%), Positives = 31/47 (65%)
Frame = +1
Query: 409 LGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFED 549
+GGLP + L FF R+G+++ V ++ D+ +S G+GF++F+D
Sbjct: 17 VGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKD 63
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 61.3 bits (142), Expect = 9e-10
Identities = 33/84 (39%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Frame = +3
Query: 129 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD-PSLVNLVLQ 305
+LFV GLS T+ E LQ F+ +G+++D V+ + +SGRS+GFGFVT+A +
Sbjct: 35 RLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAE 94
Query: 306 NGPHQLDGRTIDPKPCNPRTLQKP 377
LDG I P PR ++P
Sbjct: 95 MNAKFLDGWVIFVDPARPREPRRP 118
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 60.9 bits (141), Expect = 1e-09
Identities = 29/81 (35%), Positives = 51/81 (62%)
Frame = +3
Query: 90 MRMNPDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVT 269
+R+ D D ++ KLF+ GL+ +T+ E L+ FS YG++ + +V+ + +G+S+G+GFVT
Sbjct: 64 VRLTADSDISQR-KLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVT 122
Query: 270 FADPSLVNLVLQNGPHQLDGR 332
F L L+ ++DGR
Sbjct: 123 FMHVDGALLALKEPSKKIDGR 143
Score = 36.7 bits (81), Expect = 0.022
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +1
Query: 415 GLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSF 543
GL ++ T L F YG + E +++ D+ KS G+GF++F
Sbjct: 81 GLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTF 123
Score = 32.7 bits (71), Expect = 0.35
Identities = 16/73 (21%), Positives = 35/73 (47%)
Frame = +3
Query: 129 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN 308
K++V + ++ + L +F YG+V + + + +G+SRGF + L +
Sbjct: 168 KIYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALAD 227
Query: 309 GPHQLDGRTIDPK 347
+DG+ ++ K
Sbjct: 228 PVKVIDGKHLNCK 240
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 60.9 bits (141), Expect = 1e-09
Identities = 29/81 (35%), Positives = 51/81 (62%)
Frame = +3
Query: 90 MRMNPDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVT 269
+R+ D D ++ KLF+ GL+ +T+ E L+ FS YG++ + +V+ + +G+S+G+GFVT
Sbjct: 64 VRLTADSDISQR-KLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVT 122
Query: 270 FADPSLVNLVLQNGPHQLDGR 332
F L L+ ++DGR
Sbjct: 123 FMHVDGALLALKEPSKKIDGR 143
Score = 36.7 bits (81), Expect = 0.022
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +1
Query: 415 GLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSF 543
GL ++ T L F YG + E +++ D+ KS G+GF++F
Sbjct: 81 GLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTF 123
Score = 32.7 bits (71), Expect = 0.35
Identities = 16/73 (21%), Positives = 35/73 (47%)
Frame = +3
Query: 129 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN 308
K++V + ++ + L +F YG+V + + + +G+SRGF + L +
Sbjct: 168 KIYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALAD 227
Query: 309 GPHQLDGRTIDPK 347
+DG+ ++ K
Sbjct: 228 PVKVIDGKHLNCK 240
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 60.1 bits (139), Expect = 2e-09
Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Frame = +3
Query: 129 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN 308
+++VG L W+ L++ FS +G+V++ V+ + E+GRSRGFGFVT +D +N +
Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 304
Query: 309 GPHQ-LDGRTIDPKPCNPRTLQKPKRG 386
Q L+GR I R P+RG
Sbjct: 305 LDGQNLEGRAIRVNVAEER---PPRRG 328
Score = 51.6 bits (118), Expect = 7e-07
Identities = 31/100 (31%), Positives = 52/100 (52%), Gaps = 1/100 (1%)
Frame = +3
Query: 111 DDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLV 290
+ E+ KLFVG L+++ + + L F + G V V+ N E+ +SRGFGFVT +
Sbjct: 145 EPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEA 204
Query: 291 NLVLQN-GPHQLDGRTIDPKPCNPRTLQKPKRGGGYPKVF 407
++ + L+GR + PR +P+R P+V+
Sbjct: 205 ETAVEKFNRYDLNGRLLTVNKAAPRG-SRPERA---PRVY 240
Score = 42.3 bits (95), Expect = 4e-04
Identities = 19/50 (38%), Positives = 29/50 (58%)
Frame = +1
Query: 400 RCSLGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFED 549
R +G LP +V L F +GKV+E ++YD+ +S GFGF++ D
Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSD 294
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 59.7 bits (138), Expect = 3e-09
Identities = 30/92 (32%), Positives = 50/92 (54%)
Frame = +3
Query: 114 DDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVN 293
D + +FV G W+T+QENL+ F YGE+ +C V+ + ++GR +G+GFV F
Sbjct: 404 DIAQRNIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAR 463
Query: 294 LVLQNGPHQLDGRTIDPKPCNPRTLQKPKRGG 389
L+ ++ R + CN + +KP + G
Sbjct: 464 EALKRPEKRMYNRIV---VCNLAS-EKPGKAG 491
Score = 33.9 bits (74), Expect = 0.15
Identities = 19/80 (23%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Frame = +1
Query: 310 DLINLMAGPSTL-SRAILALFKNRNVAVDTLRCSLGGLPSNVTETDLXVFFGRYGKVMEV 486
+L+NL+ + SR I A+ ++ + + + G + T+ +L F YG++ E
Sbjct: 378 ELVNLIYKTAEKGSRLISAILESADRDIAQRNIFVRGFGWDTTQENLKTAFESYGEIEEC 437
Query: 487 VIMYDQXKKKSXGFGFLSFE 546
++ D+ + G+GF+ F+
Sbjct: 438 SVVMDKDTGRGKGYGFVMFK 457
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 57.2 bits (132), Expect = 1e-08
Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Frame = +3
Query: 129 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN 308
+++VG LS T+ + L+ FS YG V+D +VM++ + RSRGFGFVT++ S +
Sbjct: 4 RVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSG 63
Query: 309 -GPHQLDGRTIDPK 347
+L+GR + K
Sbjct: 64 MDGKELNGRRVSVK 77
Score = 38.7 bits (86), Expect = 0.005
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +1
Query: 400 RCSLGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFEDEIXVE 564
R +G L T+ L F YG V++ ++M D+ +S GFGF+++ E
Sbjct: 4 RVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAE 58
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 56.4 bits (130), Expect = 2e-08
Identities = 23/48 (47%), Positives = 34/48 (70%)
Frame = +3
Query: 129 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 272
K+FV GL WET++E L F YGE+ +C V+ + +G+++GFGFV F
Sbjct: 105 KIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMF 152
Score = 37.1 bits (82), Expect = 0.016
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Frame = +1
Query: 313 LINLMAGPSTLSRAIL-ALFKNRNVAVDTLRCSLGGLPSNVTETDLXVFFGRYGKVMEVV 489
L++L+ S + +I A+ + + V + + GLP T L F YG++ E
Sbjct: 75 LVDLVCSASRIGSSIYSAVVEAADRDVTHRKIFVYGLPWETTRETLVGVFEGYGEIEECT 134
Query: 490 IMYDQXKKKSXGFGFLSFE 546
++ D+ K+ GFGF+ F+
Sbjct: 135 VVIDKATGKAKGFGFVMFK 153
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 56.4 bits (130), Expect = 2e-08
Identities = 23/48 (47%), Positives = 34/48 (70%)
Frame = +3
Query: 129 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 272
K+FV GL WET++E L F YGE+ +C V+ + +G+++GFGFV F
Sbjct: 105 KIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMF 152
Score = 37.1 bits (82), Expect = 0.016
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Frame = +1
Query: 313 LINLMAGPSTLSRAIL-ALFKNRNVAVDTLRCSLGGLPSNVTETDLXVFFGRYGKVMEVV 489
L++L+ S + +I A+ + + V + + GLP T L F YG++ E
Sbjct: 75 LVDLVCSASRIGSSIYSAVVEAADRDVTHRKIFVYGLPWETTRETLVGVFEGYGEIEECT 134
Query: 490 IMYDQXKKKSXGFGFLSFE 546
++ D+ K+ GFGF+ F+
Sbjct: 135 VVIDKATGKAKGFGFVMFK 153
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 56.0 bits (129), Expect = 3e-08
Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Frame = +3
Query: 129 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN 308
KLFVG LSW + E+L F G+V+ V+ + ++GRSRG+GFV ++ + + L++
Sbjct: 178 KLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALES 237
Query: 309 -GPHQLDGRTI 338
+L+GR I
Sbjct: 238 LDGFELEGRAI 248
Score = 37.9 bits (84), Expect = 0.009
Identities = 23/84 (27%), Positives = 37/84 (44%)
Frame = +3
Query: 129 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN 308
KL+ G L + L + + V+ N ++G+SRGF FVT ++ N+++ N
Sbjct: 86 KLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDN 145
Query: 309 GPHQLDGRTIDPKPCNPRTLQKPK 380
LDG + KPK
Sbjct: 146 ----LDGTEYLGRALKVNFADKPK 165
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 55.6 bits (128), Expect = 4e-08
Identities = 25/74 (33%), Positives = 40/74 (54%)
Frame = +3
Query: 111 DDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLV 290
+D K+FV GL W+T E L F +YGE+ DC + + SG+S+G+GF+ + S
Sbjct: 135 EDPVHRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGA 194
Query: 291 NLVLQNGPHQLDGR 332
L+ ++ R
Sbjct: 195 RNALKQPQKKIGSR 208
Score = 31.5 bits (68), Expect = 0.81
Identities = 15/64 (23%), Positives = 31/64 (48%)
Frame = +3
Query: 129 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN 308
K++V + E + L +FS++GE+ + + + +GR +GF + L+
Sbjct: 246 KIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEE 305
Query: 309 GPHQ 320
PH+
Sbjct: 306 -PHK 308
Score = 29.1 bits (62), Expect = 4.3
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = +1
Query: 433 TETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFE 546
TET L F +YG++ + ++D+ KS G+GF+ ++
Sbjct: 153 TET-LIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYK 189
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 55.6 bits (128), Expect = 4e-08
Identities = 25/74 (33%), Positives = 40/74 (54%)
Frame = +3
Query: 111 DDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLV 290
+D K+FV GL W+T E L F +YGE+ DC + + SG+S+G+GF+ + S
Sbjct: 135 EDPVHRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGA 194
Query: 291 NLVLQNGPHQLDGR 332
L+ ++ R
Sbjct: 195 RNALKQPQKKIGSR 208
Score = 31.5 bits (68), Expect = 0.81
Identities = 15/64 (23%), Positives = 31/64 (48%)
Frame = +3
Query: 129 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN 308
K++V + E + L +FS++GE+ + + + +GR +GF + L+
Sbjct: 246 KIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEE 305
Query: 309 GPHQ 320
PH+
Sbjct: 306 -PHK 308
Score = 29.1 bits (62), Expect = 4.3
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = +1
Query: 433 TETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFE 546
TET L F +YG++ + ++D+ KS G+GF+ ++
Sbjct: 153 TET-LIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYK 189
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 55.6 bits (128), Expect = 4e-08
Identities = 25/74 (33%), Positives = 40/74 (54%)
Frame = +3
Query: 111 DDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLV 290
+D K+FV GL W+T E L F +YGE+ DC + + SG+S+G+GF+ + S
Sbjct: 135 EDPVHRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGA 194
Query: 291 NLVLQNGPHQLDGR 332
L+ ++ R
Sbjct: 195 RNALKQPQKKIGSR 208
Score = 31.5 bits (68), Expect = 0.81
Identities = 15/64 (23%), Positives = 31/64 (48%)
Frame = +3
Query: 129 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN 308
K++V + E + L +FS++GE+ + + + +GR +GF + L+
Sbjct: 246 KIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEE 305
Query: 309 GPHQ 320
PH+
Sbjct: 306 -PHK 308
Score = 29.1 bits (62), Expect = 4.3
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = +1
Query: 433 TETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFE 546
TET L F +YG++ + ++D+ KS G+GF+ ++
Sbjct: 153 TET-LIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYK 189
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 55.2 bits (127), Expect = 6e-08
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Frame = +3
Query: 129 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQ- 305
+L+VG LSW L+ F+ G+V++ V+ + +SGRS+GFGFVT + V +
Sbjct: 250 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 309
Query: 306 -NGPHQLDGRTI 338
NG LDGR I
Sbjct: 310 LNGA-DLDGRQI 320
Score = 52.0 bits (119), Expect = 5e-07
Identities = 34/96 (35%), Positives = 47/96 (48%), Gaps = 7/96 (7%)
Frame = +3
Query: 129 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQ- 305
KLFVG LS+ L + F G V V+ + +GRSRGFGFVT + + V Q
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 306 -NGPHQLDGRTI-----DPKPCNPRTLQKPKRGGGY 395
NG ++ +GR + P P + + R GGY
Sbjct: 160 FNG-YEFEGRPLRVNAGPPPPKREESFSRGPRSGGY 194
Score = 38.7 bits (86), Expect = 0.005
Identities = 34/131 (25%), Positives = 44/131 (33%), Gaps = 5/131 (3%)
Frame = +1
Query: 376 RNVAVDTLRCSLGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFEDEI 555
RN L+ +G L NV L F G V V ++YD+ +S GFGF++
Sbjct: 92 RNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAA 151
Query: 556 XVERVTPRTLSXTSKGXXG*DKAAXEPPD-----GSGXTPGXXGXRPGRXAPXXXAXGXG 720
VE + +G A PP G G G G G G
Sbjct: 152 EVEAAAQQFNGYEFEGRPLRVNAGPPPPKREESFSRGPRSGGYGSERGGGYGSERGGGYG 211
Query: 721 XAGGPGXAPXR 753
G G R
Sbjct: 212 SERGGGYGSQR 222
Score = 37.9 bits (84), Expect = 0.009
Identities = 18/56 (32%), Positives = 29/56 (51%)
Frame = +1
Query: 400 RCSLGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFEDEIXVER 567
R +G L V + L F GKV+E ++YD+ +S GFGF++ V++
Sbjct: 250 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQK 305
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 55.2 bits (127), Expect = 6e-08
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Frame = +3
Query: 129 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQ- 305
+L+VG LSW L+ F+ G+V++ V+ + +SGRS+GFGFVT + V +
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 306 -NGPHQLDGRTI 338
NG LDGR I
Sbjct: 318 LNGA-DLDGRQI 328
Score = 52.0 bits (119), Expect = 5e-07
Identities = 34/96 (35%), Positives = 47/96 (48%), Gaps = 7/96 (7%)
Frame = +3
Query: 129 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQ- 305
KLFVG LS+ L + F G V V+ + +GRSRGFGFVT + + V Q
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 306 -NGPHQLDGRTI-----DPKPCNPRTLQKPKRGGGY 395
NG ++ +GR + P P + + R GGY
Sbjct: 160 FNG-YEFEGRPLRVNAGPPPPKREESFSRGPRSGGY 194
Score = 38.7 bits (86), Expect = 0.005
Identities = 34/131 (25%), Positives = 44/131 (33%), Gaps = 5/131 (3%)
Frame = +1
Query: 376 RNVAVDTLRCSLGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFEDEI 555
RN L+ +G L NV L F G V V ++YD+ +S GFGF++
Sbjct: 92 RNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAA 151
Query: 556 XVERVTPRTLSXTSKGXXG*DKAAXEPPD-----GSGXTPGXXGXRPGRXAPXXXAXGXG 720
VE + +G A PP G G G G G G
Sbjct: 152 EVEAAAQQFNGYEFEGRPLRVNAGPPPPKREESFSRGPRSGGYGSERGGGYGSERGGGYG 211
Query: 721 XAGGPGXAPXR 753
G G R
Sbjct: 212 SERGGGYGSER 222
Score = 37.9 bits (84), Expect = 0.009
Identities = 18/56 (32%), Positives = 29/56 (51%)
Frame = +1
Query: 400 RCSLGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFEDEIXVER 567
R +G L V + L F GKV+E ++YD+ +S GFGF++ V++
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQK 313
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 55.2 bits (127), Expect = 6e-08
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Frame = +3
Query: 129 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF-ADPSLVNLVLQ 305
+++VG LSW L+ FS G+V++ V+ + +SGRS+GFGFVT+ + + N +
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264
Query: 306 NGPHQLDGRTI 338
LDGR I
Sbjct: 265 LDGADLDGRQI 275
Score = 50.0 bits (114), Expect = 2e-06
Identities = 35/93 (37%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Frame = +3
Query: 129 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQ- 305
KLFVG L + L + F G V V+ + +GRSRGFGFVT + S V Q
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151
Query: 306 -NGPHQLDGRTIDPKPCNPRTLQKPKRGGGYPK 401
NG ++LDGR + P PKR G+ +
Sbjct: 152 FNG-YELDGRPLRVNAGPP----PPKREDGFSR 179
Score = 39.9 bits (89), Expect = 0.002
Identities = 22/65 (33%), Positives = 33/65 (50%)
Frame = +1
Query: 370 KNRNVAVDTLRCSLGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFED 549
K ++ + D L+ +G LP NV L F G V V ++YD+ +S GFGF++
Sbjct: 83 KEQSFSAD-LKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSS 141
Query: 550 EIXVE 564
VE
Sbjct: 142 VSEVE 146
Score = 39.5 bits (88), Expect = 0.003
Identities = 18/55 (32%), Positives = 30/55 (54%)
Frame = +1
Query: 400 RCSLGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFEDEIXVE 564
R +G L V + L F GKV+E ++YD+ +S GFGF++++ V+
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQ 259
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 54.0 bits (124), Expect = 1e-07
Identities = 22/52 (42%), Positives = 34/52 (65%)
Frame = +3
Query: 129 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPS 284
K+FV GL W+T ++L F +YGE+ DC + + SG+S+G+GF+ F S
Sbjct: 129 KIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRS 180
Score = 34.3 bits (75), Expect = 0.11
Identities = 16/64 (25%), Positives = 32/64 (50%)
Frame = +3
Query: 129 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN 308
K++V +S + + L +FSR+GE+ + + + +GR +GF + L+
Sbjct: 228 KIYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALEE 287
Query: 309 GPHQ 320
PH+
Sbjct: 288 -PHK 290
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 52.8 bits (121), Expect = 3e-07
Identities = 32/79 (40%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Frame = +3
Query: 132 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFA--DPSLVNLVLQ 305
LFV GLS T+ E L+ F+++GEV D V+ + SG S+GFGFV +A + S +
Sbjct: 58 LFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIAGM 117
Query: 306 NGPHQLDGRTIDPKPCNPR 362
+G LDG I + PR
Sbjct: 118 DGKF-LDGWVIFAEYARPR 135
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 52.4 bits (120), Expect = 4e-07
Identities = 28/73 (38%), Positives = 42/73 (57%)
Frame = +3
Query: 132 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQNG 311
L++ L + E L+ FS YG V C VM NS+ G SRGFGFV +++P L ++
Sbjct: 330 LYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQ-GLSRGFGFVAYSNPEEALLAMK-- 386
Query: 312 PHQLDGRTIDPKP 350
+++G+ I KP
Sbjct: 387 --EMNGKMIGRKP 397
Score = 47.2 bits (107), Expect = 2e-05
Identities = 21/58 (36%), Positives = 35/58 (60%)
Frame = +3
Query: 132 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQ 305
++V L E + + L++ F +YG++ VVMK+ +SG SR FGFV F P + ++
Sbjct: 227 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKD-QSGNSRSFGFVNFVSPEAAAVAVE 283
Score = 38.7 bits (86), Expect = 0.005
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = +1
Query: 418 LPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSF 543
LP +T+ +L FG+YG + V+M DQ S FGF++F
Sbjct: 232 LPKEITDDELKKTFGKYGDISSAVVMKDQ-SGNSRSFGFVNF 272
Score = 37.5 bits (83), Expect = 0.012
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = +3
Query: 123 KGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 272
KG +F+ L + L FS +G ++ C V + GRS+G+GFV F
Sbjct: 131 KGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVV-GRSKGYGFVQF 179
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 51.6 bits (118), Expect = 7e-07
Identities = 29/72 (40%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Frame = +3
Query: 129 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVL-- 302
KL++GGLS T + +L+ FS + V + VM N +GRSRG+GFV F N +
Sbjct: 32 KLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISA 91
Query: 303 QNGPHQLDGRTI 338
NG +L+G I
Sbjct: 92 MNG-QELNGFNI 102
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +1
Query: 409 LGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFEDE 552
+GGL E L F + V E +M ++ +S G+GF++F E
Sbjct: 35 IGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISE 82
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 51.2 bits (117), Expect = 9e-07
Identities = 28/81 (34%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Frame = +3
Query: 102 PDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADP 281
P + DE L++G L + L FS +GE++ V+K+ +G S+G+GFV +AD
Sbjct: 473 PSKEYDETN-LYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADV 531
Query: 282 SLVNLVLQ--NGPHQLDGRTI 338
+ N +Q NG ++ +GRT+
Sbjct: 532 QMANTAVQAMNG-YRFEGRTL 551
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 51.2 bits (117), Expect = 9e-07
Identities = 28/81 (34%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Frame = +3
Query: 102 PDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADP 281
P + DE L++G L + L FS +GE++ V+K+ +G S+G+GFV +AD
Sbjct: 473 PSKEYDETN-LYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADV 531
Query: 282 SLVNLVLQ--NGPHQLDGRTI 338
+ N +Q NG ++ +GRT+
Sbjct: 532 QMANTAVQAMNG-YRFEGRTL 551
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 51.2 bits (117), Expect = 9e-07
Identities = 20/48 (41%), Positives = 35/48 (72%)
Frame = +1
Query: 409 LGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFEDE 552
+GG+P ++TE DL F +YG++++V ++ D+ KS GF FL++ED+
Sbjct: 40 VGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQ 87
Score = 50.4 bits (115), Expect = 2e-06
Identities = 24/75 (32%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Frame = +3
Query: 132 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQNG 311
++VGG+ ++ ++ +L FS+YGE++D ++++ +G+S+GF F+ + D L + N
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNL 97
Query: 312 PHQLD-GRTIDPKPC 353
L GRTI C
Sbjct: 98 NGALVLGRTIKVDHC 112
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 50.8 bits (116), Expect = 1e-06
Identities = 22/74 (29%), Positives = 42/74 (56%)
Frame = +3
Query: 117 DEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNL 296
+ + K++VG L W T + L+ +FS++G ++ V+ + ++GR+R F F++F +
Sbjct: 209 ESQHKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDA 268
Query: 297 VLQNGPHQLDGRTI 338
L Q +GR I
Sbjct: 269 ALSFNGTQYEGRRI 282
Score = 33.5 bits (73), Expect = 0.20
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Frame = +3
Query: 186 FSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN-GPHQLDGRTIDPK---PC 353
F +G VI V +N ++G SRG G+VT + + + + ++ GR + +
Sbjct: 128 FQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIASLDGTEVGGREMRVRYSVDM 187
Query: 354 NPRTLQKPKRGGGYPKVFL 410
NP T + P+ PK L
Sbjct: 188 NPGTRRNPEVLNSTPKKIL 206
Score = 27.9 bits (59), Expect = 10.0
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +1
Query: 409 LGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSF 543
+G LP L F ++G ++ +++D+ ++ F FLSF
Sbjct: 216 VGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSF 260
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 50.0 bits (114), Expect = 2e-06
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Frame = +3
Query: 120 EKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLV 299
E+G+L+VG L + + L + F G V+D ++ + + RSRGFGFVT
Sbjct: 114 EEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEA 173
Query: 300 LQN-GPHQLDGRTI 338
+Q Q+ GRT+
Sbjct: 174 MQMFNSSQIGGRTV 187
Score = 44.8 bits (101), Expect = 8e-05
Identities = 19/47 (40%), Positives = 30/47 (63%)
Frame = +1
Query: 400 RCSLGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLS 540
R +G LP +T ++L FG G V++V I+YD+ +S GFGF++
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVT 163
Score = 44.8 bits (101), Expect = 8e-05
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Frame = +3
Query: 117 DEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVN- 293
D K++ G L W + + L+ F V+ V+ +GRSRGFGF++F V
Sbjct: 216 DSPHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQS 275
Query: 294 -LVLQNGPHQLDGRTI 338
L NG +++GR +
Sbjct: 276 ALATMNGV-EVEGRAL 290
Score = 35.9 bits (79), Expect = 0.038
Identities = 20/64 (31%), Positives = 31/64 (48%)
Frame = +1
Query: 373 NRNVAVDTLRCSLGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFEDE 552
NR+ + G L N+T L FG V+ ++Y++ +S GFGF+SFE
Sbjct: 211 NRSYVDSPHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESA 270
Query: 553 IXVE 564
V+
Sbjct: 271 ENVQ 274
>At2g21690.1 68415.m02580 RNA-binding protein, putative similar to
Glycine-rich RNA-binding protein from {Sinapis alba}
SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis
thaliana} SP|Q03251; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 117
Score = 49.6 bits (113), Expect = 3e-06
Identities = 21/48 (43%), Positives = 34/48 (70%)
Frame = +3
Query: 135 FVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD 278
FV GL +T +++L FS++G VID ++ + ++G+SR FGFVTF +
Sbjct: 10 FVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEE 57
Score = 46.0 bits (104), Expect = 4e-05
Identities = 20/50 (40%), Positives = 31/50 (62%)
Frame = +1
Query: 403 CSLGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFEDE 552
C + GL + E DL F ++G V++ I+YD+ KS FGF++FE+E
Sbjct: 9 CFVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEE 58
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 49.2 bits (112), Expect = 4e-06
Identities = 31/105 (29%), Positives = 55/105 (52%)
Frame = +3
Query: 102 PDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADP 281
PD+ D L V +++ T+ ++L F++YG+V+D + ++ +G SRGF FV +
Sbjct: 10 PDISDTYS--LLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYK 67
Query: 282 SLVNLVLQNGPHQLDGRTIDPKPCNPRTLQKPKRGGGYPKVFLGR 416
+ ++ +LDGR +D + T+Q K G K+ GR
Sbjct: 68 DEAHKAVE----RLDGRVVDGREI---TVQFAKYGPNAEKISKGR 105
Score = 35.1 bits (77), Expect = 0.066
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Frame = +1
Query: 391 DTLRCSLGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFL--SFEDEI--X 558
DT + + T DL F +YGKV++V I D+ S GF F+ ++DE
Sbjct: 14 DTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKA 73
Query: 559 VERVTPRTL 585
VER+ R +
Sbjct: 74 VERLDGRVV 82
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 49.2 bits (112), Expect = 4e-06
Identities = 31/105 (29%), Positives = 55/105 (52%)
Frame = +3
Query: 102 PDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADP 281
PD+ D L V +++ T+ ++L F++YG+V+D + ++ +G SRGF FV +
Sbjct: 10 PDISDTYS--LLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYK 67
Query: 282 SLVNLVLQNGPHQLDGRTIDPKPCNPRTLQKPKRGGGYPKVFLGR 416
+ ++ +LDGR +D + T+Q K G K+ GR
Sbjct: 68 DEAHKAVE----RLDGRVVDGREI---TVQFAKYGPNAEKISKGR 105
Score = 35.1 bits (77), Expect = 0.066
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Frame = +1
Query: 391 DTLRCSLGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFL--SFEDEI--X 558
DT + + T DL F +YGKV++V I D+ S GF F+ ++DE
Sbjct: 14 DTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKA 73
Query: 559 VERVTPRTL 585
VER+ R +
Sbjct: 74 VERLDGRVV 82
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 48.8 bits (111), Expect = 5e-06
Identities = 24/71 (33%), Positives = 45/71 (63%)
Frame = +3
Query: 129 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN 308
+LFV LS T+ ++L++ FS +G++ + ++++SE+ R +GFGF+TF L++
Sbjct: 8 QLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKS 67
Query: 309 GPHQLDGRTID 341
LDG+ +D
Sbjct: 68 ----LDGKIVD 74
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 48.0 bits (109), Expect = 9e-06
Identities = 27/79 (34%), Positives = 39/79 (49%)
Frame = +3
Query: 93 RMNPDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 272
R D D L V L + QE+L+R F ++G V D + ++ +G RGFGF+ F
Sbjct: 26 RFGGSRDSDLPTSLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQF 85
Query: 273 ADPSLVNLVLQNGPHQLDG 329
DP+ HQ+DG
Sbjct: 86 MDPA----DAAEAKHQMDG 100
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 47.6 bits (108), Expect = 1e-05
Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Frame = +3
Query: 132 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQNG 311
LFVG LS T+++ L+ S+YG + + ++++ +G SRG+GFV + + ++
Sbjct: 66 LFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYEDA 125
Query: 312 PHQL-DGRTI 338
H L DGR I
Sbjct: 126 HHSLIDGREI 135
Score = 29.5 bits (63), Expect = 3.3
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = +1
Query: 385 AVDTLRCSL--GGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFEDE 552
AV C+L G L + TE L +YG++ + ++ S G+GF+ +E E
Sbjct: 58 AVGDPYCTLFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETE 115
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 46.8 bits (106), Expect = 2e-05
Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Frame = +3
Query: 132 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF--ADPSLVNLVLQ 305
++V L+ T+ ++L+ F YG++ VVMK+ E G+S+GFGFV F AD + +
Sbjct: 31 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGE-GKSKGFGFVNFENADDAARAVESL 89
Query: 306 NGPHQLDGR 332
NG H+ D +
Sbjct: 90 NG-HKFDDK 97
Score = 44.8 bits (101), Expect = 8e-05
Identities = 28/80 (35%), Positives = 39/80 (48%)
Frame = +3
Query: 111 DDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLV 290
D + L+V L S E L+ FS +G V VM++ +G S+G GFV FA P
Sbjct: 127 DKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDP-NGTSKGSGFVAFATPEEA 185
Query: 291 NLVLQNGPHQLDGRTIDPKP 350
+ QL G+ I+ KP
Sbjct: 186 TEAMS----QLSGKMIESKP 201
Score = 42.3 bits (95), Expect = 4e-04
Identities = 20/44 (45%), Positives = 28/44 (63%)
Frame = +1
Query: 418 LPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFED 549
L + T+ DL FG YGK+ V+M D + KS GFGF++FE+
Sbjct: 36 LAESTTDDDLKNAFGEYGKITSAVVMKD-GEGKSKGFGFVNFEN 78
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 46.8 bits (106), Expect = 2e-05
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 3/103 (2%)
Frame = +3
Query: 102 PDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADP 281
P K KL+V GLS+ T+++ L+ F ++G +I ++ + + R +GF F+ +
Sbjct: 69 PSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETE 128
Query: 282 SLVNLVLQNGPHQ--LDGRTIDPKPCNPRT-LQKPKRGGGYPK 401
+Q G H LDGR I + R+ + + K +PK
Sbjct: 129 EEAMKAIQ-GMHGKFLDGRVIFVEEAKTRSDMSRAKPRRDFPK 170
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 46.4 bits (105), Expect = 3e-05
Identities = 26/86 (30%), Positives = 44/86 (51%)
Frame = +3
Query: 90 MRMNPDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVT 269
++ +P + + ++V LS S E L + F +G CV+M++ E G+S+GFGFV
Sbjct: 212 LQRDPSGEKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGE-GKSKGFGFVN 270
Query: 270 FADPSLVNLVLQNGPHQLDGRTIDPK 347
F + + L+G+T D K
Sbjct: 271 FENSDDAARAVD----ALNGKTFDDK 292
Score = 44.0 bits (99), Expect = 1e-04
Identities = 24/80 (30%), Positives = 41/80 (51%)
Frame = +3
Query: 111 DDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLV 290
D + L+V L + + L+ +F+ +G + C VM++ SG SRG GFV F+ P
Sbjct: 322 DKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDP-SGVSRGSGFVAFSTPEEA 380
Query: 291 NLVLQNGPHQLDGRTIDPKP 350
+ +++G+ I KP
Sbjct: 381 TRAIT----EMNGKMIVTKP 396
Score = 37.1 bits (82), Expect = 0.016
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = +3
Query: 99 NPDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 272
+P + G +F+ L + L FS +G ++ C V + SG+S+G+GFV +
Sbjct: 124 DPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDP-SGQSKGYGFVQY 180
Score = 35.9 bits (79), Expect = 0.038
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = +3
Query: 132 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN- 308
L+VG L + L F++ G+V+ V ++ + RS G+G+V +A P + L
Sbjct: 47 LYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNEL 106
Query: 309 GPHQLDGRTI 338
L+GR I
Sbjct: 107 NFMALNGRAI 116
Score = 34.7 bits (76), Expect = 0.087
Identities = 17/44 (38%), Positives = 27/44 (61%)
Frame = +1
Query: 418 LPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFED 549
L ++++ +L FG +G VIM D + KS GFGF++FE+
Sbjct: 231 LSESLSDEELNKVFGEFGVTTSCVIMRD-GEGKSKGFGFVNFEN 273
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 46.0 bits (104), Expect = 4e-05
Identities = 25/77 (32%), Positives = 47/77 (61%)
Frame = +3
Query: 108 MDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSL 287
M D+ ++VGGL ++ ++E ++R FS YG V+ V + N S R + +GFVTF++
Sbjct: 1 MTMDDGNSVYVGGLPYDITEEAVRRVFSIYGSVL-TVKIVNDRSVRGKCYGFVTFSNRRS 59
Query: 288 VNLVLQNGPHQLDGRTI 338
+ +++ +DG++I
Sbjct: 60 ADDAIED----MDGKSI 72
Score = 32.7 bits (71), Expect = 0.35
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = +1
Query: 409 LGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFED 549
+GGLP ++TE + F YG V+ V I+ D+ + +GF++F +
Sbjct: 11 VGGLPYDITEEAVRRVFSIYGSVLTVKIVNDR-SVRGKCYGFVTFSN 56
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 46.0 bits (104), Expect = 4e-05
Identities = 23/77 (29%), Positives = 40/77 (51%)
Frame = +3
Query: 132 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQNG 311
LF G LS++ ++ +++ +F GEV+D V + + + G +G+G + FA P L+
Sbjct: 386 LFAGNLSYQIARSDIENFFKEAGEVVD-VRLSSFDDGSFKGYGHIEFASPEEAQKALEMN 444
Query: 312 PHQLDGRTIDPKPCNPR 362
L GR + N R
Sbjct: 445 GKLLLGRDVRLDLANER 461
Score = 33.9 bits (74), Expect = 0.15
Identities = 22/76 (28%), Positives = 36/76 (47%)
Frame = +3
Query: 135 FVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQNGP 314
F L + ++ L+ +FS+ GEV V + E+G SRGF ++ S + LQ
Sbjct: 486 FSSSLGEDEIKKELRSHFSKCGEVTRVHVPTDRETGASRGFAYIDLT--SGFDEALQLSG 543
Query: 315 HQLDGRTIDPKPCNPR 362
++ G I + PR
Sbjct: 544 SEIGGGNIHVEESRPR 559
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 46.0 bits (104), Expect = 4e-05
Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Frame = +3
Query: 132 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD-PSLVNLVLQN 308
LFV G+S+ +++E L + FS+YG+V+ V+ + R +GF +VTF+ +L+
Sbjct: 23 LFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLEL 82
Query: 309 GPHQLDGRTI 338
+DGR +
Sbjct: 83 NAQLVDGRVV 92
Score = 34.3 bits (75), Expect = 0.11
Identities = 14/51 (27%), Positives = 30/51 (58%)
Frame = +1
Query: 415 GLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFEDEIXVER 567
G+ + TE L F +YG+V++V ++ D+ + + GF +++F + E+
Sbjct: 27 GISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEK 77
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 45.6 bits (103), Expect = 5e-05
Identities = 23/54 (42%), Positives = 31/54 (57%)
Frame = +3
Query: 111 DDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 272
D +FVG LS E + L + FS + D VM + ++GRSRGFGFV+F
Sbjct: 139 DTSSHFNIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSF 192
Score = 36.3 bits (80), Expect = 0.028
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +1
Query: 409 LGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFEDE 552
+G L VT+ L F + + +M+DQ +S GFGF+SF ++
Sbjct: 148 VGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQ 195
Score = 33.1 bits (72), Expect = 0.26
Identities = 29/88 (32%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
Frame = +3
Query: 132 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQNG 311
++VG L+ E +Q +L RYF G V++ R +GFGFV + L +Q G
Sbjct: 267 VYVGNLAPEVTQLDLHRYFHALG----AGVIEEVRVQRDKGFGFVRYNTHPEAALAIQMG 322
Query: 312 PHQ--LDGRTI----DPKPCNPRTLQKP 377
Q L R I KP P T P
Sbjct: 323 NTQPYLFNRQIKCSWGNKPTPPGTASNP 350
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 44.8 bits (101), Expect = 8e-05
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Frame = +3
Query: 129 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD-PSLVNLVLQ 305
+L+VG L S+++L++ F +G V + V + E+G +GFGFV FA N +
Sbjct: 286 RLYVGNLHINMSEDDLRKVFESFGSV-ELVQVPRDETGLCKGFGFVQFARLEDARNALNL 344
Query: 306 NGPHQLDGRTIDPKPCNPRTLQKPKRG 386
NG ++ GR I +T + P+ G
Sbjct: 345 NGQLEIAGRAIKVSAVTDQT-EVPEAG 370
Score = 42.3 bits (95), Expect = 4e-04
Identities = 23/87 (26%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Frame = +3
Query: 93 RMNPDMDDD-EKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVT 269
++ P+ D + ++ +F ++ ++ ++ +FSR G+V D ++ + S RSRG G+V
Sbjct: 170 KVEPEADPERDQRTVFAYQIALRATERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGYVE 229
Query: 270 FADPSLVNLVLQNGPHQLDGRTIDPKP 350
F D V + + L G+ + KP
Sbjct: 230 FYDTMSVPMAIALSGQPLLGQPVMVKP 256
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/43 (41%), Positives = 27/43 (62%)
Frame = +1
Query: 433 TETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFEDEIXV 561
TE D+ FF R GKV +V I+ D+ ++S G G++ F D + V
Sbjct: 194 TERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGYVEFYDTMSV 236
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 44.4 bits (100), Expect = 1e-04
Identities = 26/80 (32%), Positives = 39/80 (48%)
Frame = +3
Query: 111 DDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLV 290
+ + L++ L E L+ FS YG V VM N + G SRGFGFV +++P
Sbjct: 327 EKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPEEA 385
Query: 291 NLVLQNGPHQLDGRTIDPKP 350
L +++G+ I KP
Sbjct: 386 LRALS----EMNGKMIGRKP 401
Score = 38.7 bits (86), Expect = 0.005
Identities = 18/47 (38%), Positives = 30/47 (63%)
Frame = +3
Query: 132 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 272
++V L E ++ L++ F ++G + VVM++ +SG SR FGFV F
Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFGVISSAVVMRD-QSGNSRCFGFVNF 276
Score = 38.3 bits (85), Expect = 0.007
Identities = 18/50 (36%), Positives = 28/50 (56%)
Frame = +3
Query: 123 KGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 272
KG +F+ L + L FS +G ++ C V + +GRS+G+GFV F
Sbjct: 135 KGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDV-TGRSKGYGFVQF 183
Score = 35.9 bits (79), Expect = 0.038
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = +1
Query: 418 LPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFE 546
LP + E +L FG++G + V+M DQ S FGF++FE
Sbjct: 236 LPKEIGEDELRKTFGKFGVISSAVVMRDQ-SGNSRCFGFVNFE 277
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 44.0 bits (99), Expect = 1e-04
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Frame = +3
Query: 129 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN 308
++F+GGL + +E+L+ GE+ + +MK+ +SG S+G+ FV F + ++
Sbjct: 117 EVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEE 176
Query: 309 -GPHQLDGRTI 338
+ G+TI
Sbjct: 177 LHSKEFKGKTI 187
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 44.0 bits (99), Expect = 1e-04
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Frame = +3
Query: 105 DMDDDEKG-----KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVT 269
D DD E KLF+ GLS+ TS++ L+ F +GE+++ ++ + S RS+G+ F+
Sbjct: 270 DQDDSESPPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLE 329
Query: 270 FADPSLVNLVLQ 305
+ L+
Sbjct: 330 YTTEEAAGTALK 341
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 44.0 bits (99), Expect = 1e-04
Identities = 22/68 (32%), Positives = 33/68 (48%)
Frame = +3
Query: 102 PDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADP 281
PD + G +FV L + LQ F ++G ++ C V E G+SRG+GFV F
Sbjct: 104 PDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKV-ATLEDGKSRGYGFVQFEQE 162
Query: 282 SLVNLVLQ 305
+ +Q
Sbjct: 163 DAAHAAIQ 170
Score = 39.1 bits (87), Expect = 0.004
Identities = 17/50 (34%), Positives = 33/50 (66%)
Frame = +3
Query: 132 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADP 281
++V ++ ++E L+++FS+ G + +M + E G+S+GFGFV F+ P
Sbjct: 306 IYVKNVNVAVTEEELRKHFSQCGTITSTKLMCD-EKGKSKGFGFVCFSTP 354
Score = 29.9 bits (64), Expect = 2.5
Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +3
Query: 132 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQNG 311
L+VG L ++ L F+ + + + K++ SGRS +G+ F NL ++
Sbjct: 26 LYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKK 85
Query: 312 PHQ-LDGRTI 338
+ L+G+ I
Sbjct: 86 NNSLLNGKMI 95
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 44.0 bits (99), Expect = 1e-04
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Frame = +3
Query: 132 LFVGGLSWETSQENLQRYFS-RYGEVIDCVVMKNSESGRSRGFGFVTFADPS-LVNLVLQ 305
+FVG LS + S L FS +Y V V+ ++ +GRS+G+GFV F D + + +
Sbjct: 199 IFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTE 258
Query: 306 NGPHQLDGRTIDPKPCNPRTLQKPKRGGGY 395
+ R + P PR ++ GGY
Sbjct: 259 MNGVKCSSRAMRIGPATPRKTNGYQQQGGY 288
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 44.0 bits (99), Expect = 1e-04
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Frame = +3
Query: 132 LFVGGLSWETSQENLQRYFS-RYGEVIDCVVMKNSESGRSRGFGFVTFADPS-LVNLVLQ 305
+FVG LS + S L FS +Y V V+ ++ +GRS+G+GFV F D + + +
Sbjct: 199 IFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTE 258
Query: 306 NGPHQLDGRTIDPKPCNPRTLQKPKRGGGY 395
+ R + P PR ++ GGY
Sbjct: 259 MNGVKCSSRAMRIGPATPRKTNGYQQQGGY 288
Score = 30.3 bits (65), Expect = 1.9
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = +3
Query: 132 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD 278
+FVGGL + E+L++ F+ +GE++ + +G GFV F +
Sbjct: 306 IFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPV------GKGCGFVQFVN 348
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 44.0 bits (99), Expect = 1e-04
Identities = 20/63 (31%), Positives = 35/63 (55%)
Frame = +3
Query: 117 DEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNL 296
DE L++G L + + L F+ GE++ V++N ++G+ G+GF+ FA +
Sbjct: 59 DEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAER 118
Query: 297 VLQ 305
VLQ
Sbjct: 119 VLQ 121
Score = 35.9 bits (79), Expect = 0.038
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Frame = +3
Query: 111 DDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLV 290
+D +FVGGL + ++L+ FS+YGE++ + +G+ GFV F++ S
Sbjct: 256 NDPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKI----PAGKR--CGFVQFSEKSCA 309
Query: 291 NLVLQ--NGPHQLDGRTI 338
L+ NG QL G T+
Sbjct: 310 EEALRMLNGV-QLGGTTV 326
Score = 35.1 bits (77), Expect = 0.066
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +3
Query: 111 DDDEKGKLFVGGLSWE-TSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPS 284
DD +FVG L+ + T L+ + + Y V V+ + +GR++G+GFV F+D S
Sbjct: 150 DDSPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDES 208
Score = 28.7 bits (61), Expect = 5.7
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +1
Query: 409 LGGLPSNVTETDLX-VFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFEDE 552
+G L ++VT+ L F Y V ++ D+ ++ G+GF+ F DE
Sbjct: 159 VGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDE 207
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 44.0 bits (99), Expect = 1e-04
Identities = 20/63 (31%), Positives = 35/63 (55%)
Frame = +3
Query: 117 DEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNL 296
DE L++G L + + L F+ GE++ V++N ++G+ G+GF+ FA +
Sbjct: 59 DEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAER 118
Query: 297 VLQ 305
VLQ
Sbjct: 119 VLQ 121
Score = 35.1 bits (77), Expect = 0.066
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +3
Query: 111 DDDEKGKLFVGGLSWE-TSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPS 284
DD +FVG L+ + T L+ + + Y V V+ + +GR++G+GFV F+D S
Sbjct: 150 DDSPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDES 208
Score = 32.7 bits (71), Expect = 0.35
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +3
Query: 111 DDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESG 242
+D +FVGGL + ++L+ FS+YGE++ + G
Sbjct: 256 NDPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRCG 299
Score = 28.7 bits (61), Expect = 5.7
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +1
Query: 409 LGGLPSNVTETDLX-VFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFEDE 552
+G L ++VT+ L F Y V ++ D+ ++ G+GF+ F DE
Sbjct: 159 VGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDE 207
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 44.0 bits (99), Expect = 1e-04
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Frame = +3
Query: 132 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQNG 311
L+V GLS ++ +L+ +F++ G+V D ++ + + SRGFGF++ N +++
Sbjct: 77 LYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSL 136
Query: 312 PHQ-LDGRTIDPKPCNPRTLQKPKRG 386
H L GR I + R + P G
Sbjct: 137 DHSVLQGRVITVEKARRRRGRTPTPG 162
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/44 (43%), Positives = 27/44 (61%)
Frame = +1
Query: 415 GLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFE 546
GL VTE DL F + GKV +V ++ D ++S GFGF+S +
Sbjct: 81 GLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMK 124
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 43.6 bits (98), Expect = 2e-04
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Frame = +3
Query: 129 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFA--DPSLVNLVL 302
KL+VG L + S+ L++ F +G V + + E+G+ +GFGF+ F + S +
Sbjct: 266 KLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIA 325
Query: 303 QNGPHQLDGRTI 338
NG ++ GRTI
Sbjct: 326 LNGKLEIAGRTI 337
Score = 41.1 bits (92), Expect = 0.001
Identities = 17/48 (35%), Positives = 29/48 (60%)
Frame = +1
Query: 418 LPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFEDEIXV 561
+P TE D+ FF + GKV +V ++ D+ ++S G G++ F D + V
Sbjct: 175 MPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSV 222
Score = 35.5 bits (78), Expect = 0.050
Identities = 19/84 (22%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Frame = +3
Query: 102 PDMDDD-EKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD 278
P+ D + ++ +F + + ++ ++ +FS+ G+V D ++ + S RS+G G++ F D
Sbjct: 159 PEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYD 218
Query: 279 PSLVNLVLQNGPHQLDGRTIDPKP 350
V + + G+ + KP
Sbjct: 219 VMSVPMAIALSGQLFLGQPVMVKP 242
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 43.6 bits (98), Expect = 2e-04
Identities = 26/81 (32%), Positives = 43/81 (53%)
Frame = +3
Query: 132 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQNG 311
L+V LS ++ L+ F YG+++ VM + E+GRS+GFGFV F++ +
Sbjct: 306 LYVKNLSESMNETRLREIFGCYGQIVSAKVMCH-ENGRSKGFGFVCFSNCE----ESKQA 360
Query: 312 PHQLDGRTIDPKPCNPRTLQK 374
L+G +D KP R ++
Sbjct: 361 KRYLNGFLVDGKPIVVRVAER 381
Score = 43.2 bits (97), Expect = 2e-04
Identities = 22/56 (39%), Positives = 32/56 (57%)
Frame = +3
Query: 114 DDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADP 281
+ + ++V L + + L FS+YG V VVM++ GRSRGFGFV F +P
Sbjct: 198 NQDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDG-MGRSRGFGFVNFCNP 252
Score = 38.7 bits (86), Expect = 0.005
Identities = 18/47 (38%), Positives = 29/47 (61%)
Frame = +3
Query: 132 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 272
L+V L + L+R F +G ++ C V++ E+G+S+GFGFV F
Sbjct: 114 LYVKNLDSSITSSCLERMFCPFGSILSCKVVE--ENGQSKGFGFVQF 158
Score = 35.1 bits (77), Expect = 0.066
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +1
Query: 391 DTLRCSLGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSF 543
D+ + L VT+ L F +YG V VV+M D +S GFGF++F
Sbjct: 200 DSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRD-GMGRSRGFGFVNF 249
Score = 34.7 bits (76), Expect = 0.087
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Frame = +3
Query: 126 GKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADP-SLVNLVL 302
G L+VG LS + ++++L FS V+ + +NS +G+S + ++ F P S N +
Sbjct: 21 GSLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMT 80
Query: 303 QNGPHQLDGRTI 338
+ L G+ +
Sbjct: 81 RLNHSDLKGKAM 92
Score = 32.3 bits (70), Expect = 0.46
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Frame = +1
Query: 367 FKNRNVAVDTLRCS---LGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFL 537
F + +A +R S + L ++ ET L FG YG+++ +M + +S GFGF+
Sbjct: 291 FSDNFIAKPNMRWSNLYVKNLSESMNETRLREIFGCYGQIVSAKVMCHE-NGRSKGFGFV 349
Query: 538 SFED 549
F +
Sbjct: 350 CFSN 353
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 43.6 bits (98), Expect = 2e-04
Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 10/110 (9%)
Frame = +3
Query: 123 KGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVL 302
K KLFV L W S ++ F + G V + +++ + G++RGF FVT A +
Sbjct: 94 KRKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKD-GKNRGFAFVTMASGEEAQAAI 152
Query: 303 QN-GPHQLDGRTID---------PKPCNPRTLQKPKRGGGYPKVFLGRAA 422
Q+ GR I P P +P L P G K+++ A
Sbjct: 153 DKFDTFQVSGRIISVSFARRFKKPTPKSPNDLPSPAPGDTRHKLYVSNLA 202
Score = 38.7 bits (86), Expect = 0.005
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Frame = +3
Query: 117 DEKGKLFVGGLSWETSQENLQRYFSR--YGEVIDCVVMKNSESGRSRGFGFVTFAD-PSL 287
D + KL+V L+W+ +L+ F+ + V VV + E GRS G+GFV+FA
Sbjct: 191 DTRHKLYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPE-GRSSGYGFVSFATREEA 249
Query: 288 VNLVLQNGPHQLDGRTIDPK 347
N + + ++ GR I K
Sbjct: 250 ENAITKLNGKEIMGRPITLK 269
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 43.6 bits (98), Expect = 2e-04
Identities = 23/54 (42%), Positives = 30/54 (55%)
Frame = +3
Query: 111 DDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 272
D +FVG LS E + L FS + D VM + ++GRSRGFGFV+F
Sbjct: 143 DTSSHFNIFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSF 196
Score = 36.3 bits (80), Expect = 0.028
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +1
Query: 409 LGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFEDE 552
+G L VT+ L F + + +M+DQ +S GFGF+SF ++
Sbjct: 152 VGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQ 199
Score = 30.7 bits (66), Expect = 1.4
Identities = 21/63 (33%), Positives = 30/63 (47%)
Frame = +3
Query: 132 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQNG 311
++VG LS E +Q +L R F G V++ R +GFGFV + L +Q G
Sbjct: 271 VYVGNLSPEVTQLDLHRLFYTLG----AGVIEEVRVQRDKGFGFVRYNTHDEAALAIQMG 326
Query: 312 PHQ 320
Q
Sbjct: 327 NAQ 329
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 43.6 bits (98), Expect = 2e-04
Identities = 24/54 (44%), Positives = 30/54 (55%)
Frame = +3
Query: 111 DDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 272
D +FVG LS E + L FS Y D VM + ++GRSRGFGFV+F
Sbjct: 134 DTSSHFNIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSF 187
Score = 36.7 bits (81), Expect = 0.022
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +1
Query: 409 LGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFEDE 552
+G L VT+ L F Y + +M+DQ +S GFGF+SF ++
Sbjct: 143 VGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQ 190
Score = 32.7 bits (71), Expect = 0.35
Identities = 20/60 (33%), Positives = 31/60 (51%)
Frame = +3
Query: 132 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQNG 311
++VG L+ E SQ +L R+F G V++ R +GFGFV ++ L +Q G
Sbjct: 262 VYVGNLAPEVSQVDLHRHFHSLG----AGVIEEVRVQRDKGFGFVRYSTHVEAALAIQMG 317
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 43.2 bits (97), Expect = 2e-04
Identities = 22/69 (31%), Positives = 35/69 (50%)
Frame = +3
Query: 99 NPDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD 278
NP D K L++G L + + F++ GE V++N +G+S G+GF+ F
Sbjct: 52 NPGSASDVKS-LWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVS 110
Query: 279 PSLVNLVLQ 305
S+ VLQ
Sbjct: 111 HSVAERVLQ 119
Score = 38.7 bits (86), Expect = 0.005
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +3
Query: 132 LFVGGLSWETSQENLQRYFSR-YGEVIDCVVMKNSESGRSRGFGFVTFAD 278
+FVG L+ E + L F YG V V+ + +GRS+G+GFV FAD
Sbjct: 156 IFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFAD 205
Score = 31.9 bits (69), Expect = 0.61
Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 5/104 (4%)
Frame = +3
Query: 99 NPDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD 278
N +D +FVGGL + + L+ F ++GE++ + GFV +A+
Sbjct: 251 NAGDNDPNNTTIFVGGLDANVTDDELKSIFGQFGELLHVKIPPGKRC------GFVQYAN 304
Query: 279 PSLVN--LVLQNGPHQLDGRTID---PKPCNPRTLQKPKRGGGY 395
+ L + NG QL G++I + N ++ Q GGGY
Sbjct: 305 KASAEHALSVLNGT-QLGGQSIRLSWGRSPNKQSDQAQWNGGGY 347
Score = 31.5 bits (68), Expect = 0.81
Identities = 12/28 (42%), Positives = 21/28 (75%)
Frame = +1
Query: 409 LGGLPSNVTETDLXVFFGRYGKVMEVVI 492
+GGL +NVT+ +L FG++G+++ V I
Sbjct: 264 VGGLDANVTDDELKSIFGQFGELLHVKI 291
Score = 30.7 bits (66), Expect = 1.4
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +1
Query: 409 LGGLPSNVTETDLX-VFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFEDE 552
+G L VT+ L F YG V ++ D+ +S G+GF+ F DE
Sbjct: 158 VGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADE 206
Score = 28.7 bits (61), Expect = 5.7
Identities = 16/67 (23%), Positives = 29/67 (43%)
Frame = +1
Query: 370 KNRNVAVDTLRCSLGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFED 549
+N A D +G L + E + F + G+ ++ ++ +S G+GF+ F
Sbjct: 51 QNPGSASDVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVS 110
Query: 550 EIXVERV 570
ERV
Sbjct: 111 HSVAERV 117
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 43.2 bits (97), Expect = 2e-04
Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 3/94 (3%)
Frame = +3
Query: 129 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN 308
K+ V L + TS++ L+R FS +GE+ + ++K+ RS+G+ F+ F L ++
Sbjct: 41 KIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIET 100
Query: 309 GPHQL-DGRT--IDPKPCNPRTLQKPKRGGGYPK 401
++ +GR ID R Q R G P+
Sbjct: 101 MDRRMYNGRMIYIDIAKPGKRDFQGLPRTSGPPE 134
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/53 (37%), Positives = 32/53 (60%)
Frame = +3
Query: 117 DEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFA 275
D K++VG L+ ++E L+ FS G+V+ V + + +S GFGFVTF+
Sbjct: 174 DSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFS 226
Score = 42.7 bits (96), Expect = 3e-04
Identities = 24/91 (26%), Positives = 42/91 (46%)
Frame = +3
Query: 105 DMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPS 284
D + ++++G + + E L + +G V VM + SGRSR FGF T
Sbjct: 69 DPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVE 128
Query: 285 LVNLVLQNGPHQLDGRTIDPKPCNPRTLQKP 377
N V++ +L+G T++ + +KP
Sbjct: 129 DANAVVE----KLNGNTVEGREIKVNITEKP 155
Score = 37.9 bits (84), Expect = 0.009
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Frame = +1
Query: 316 INLMAGPSTLSRAILALFKNRNVAVDT-LRCSLGGLPSNVTETDLXVFFGRYGKVMEVVI 492
+N+ P S + L + VD+ + +G L VT+ L F GKV+ +
Sbjct: 149 VNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKV 208
Query: 493 MYDQXKKKSXGFGFLSFEDEIXVE 564
KS GFGF++F E VE
Sbjct: 209 SRVPGTSKSTGFGFVTFSSEEDVE 232
Score = 36.3 bits (80), Expect = 0.028
Identities = 19/68 (27%), Positives = 30/68 (44%)
Frame = +1
Query: 400 RCSLGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFEDEIXVERVTPR 579
R +G +P VT L +G V +V +MYD+ +S FGF + + V +
Sbjct: 77 RVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEK 136
Query: 580 TLSXTSKG 603
T +G
Sbjct: 137 LNGNTVEG 144
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 43.2 bits (97), Expect = 2e-04
Identities = 18/49 (36%), Positives = 32/49 (65%)
Frame = +3
Query: 129 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFA 275
++FVG L S+E+L++ F GEV + ++KN ++ +S+G F+ FA
Sbjct: 215 EIFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFA 263
Score = 37.1 bits (82), Expect = 0.016
Identities = 19/45 (42%), Positives = 24/45 (53%)
Frame = +1
Query: 409 LGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSF 543
+G L +E DL FG G+V EV I+ + KKS G FL F
Sbjct: 218 VGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRF 262
Score = 33.5 bits (73), Expect = 0.20
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +3
Query: 132 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 272
+F+ GL ++E ++ YG++ + +N S R + FGFVTF
Sbjct: 393 IFIDGLLPSWNEERVRDLLKPYGKLEKVELARNMPSARRKDFGFVTF 439
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 43.2 bits (97), Expect = 2e-04
Identities = 33/78 (42%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Frame = +3
Query: 114 DDEKG--KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSL 287
DD G +L+VG LS T +L+R FSRYG V D V MK R + FV F DP
Sbjct: 5 DDRYGNTRLYVGRLSSRTRTRDLERLFSRYGRVRD-VDMK-------RDYAFVEFGDPRD 56
Query: 288 VNLVLQNGPHQLDGRTID 341
+ + H LDGR D
Sbjct: 57 AD----DARHYLDGRDFD 70
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/50 (40%), Positives = 32/50 (64%)
Frame = +3
Query: 132 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADP 281
++V LS T+ + L+ F +YG + VVM++ + G+SR FGFV F +P
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGD-GKSRCFGFVNFENP 275
Score = 43.2 bits (97), Expect = 2e-04
Identities = 24/73 (32%), Positives = 41/73 (56%)
Frame = +3
Query: 132 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQNG 311
L+V L + E L+ F+ +G + C VM++ SG S+G GFV F+ S + VL
Sbjct: 330 LYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDP-SGTSKGSGFVAFSAASEASRVL--- 385
Query: 312 PHQLDGRTIDPKP 350
++++G+ + KP
Sbjct: 386 -NEMNGKMVGGKP 397
Score = 38.3 bits (85), Expect = 0.007
Identities = 23/74 (31%), Positives = 34/74 (45%)
Frame = +3
Query: 126 GKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQ 305
G LFV L + L FS G ++ C V G+SRG+GFV F +
Sbjct: 134 GNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKV-ATDHMGQSRGYGFVQFDTEDSA----K 188
Query: 306 NGPHQLDGRTIDPK 347
N +L+G+ ++ K
Sbjct: 189 NAIEKLNGKVLNDK 202
Score = 34.7 bits (76), Expect = 0.087
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +1
Query: 418 LPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFED 549
L T+ +L FG+YG + V+M D KS FGF++FE+
Sbjct: 232 LSEATTDDELKTTFGQYGSISSAVVMRD-GDGKSRCFGFVNFEN 274
Score = 33.9 bits (74), Expect = 0.15
Identities = 17/70 (24%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = +3
Query: 132 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQNG 311
L+VG L + + L YF+ +V+ V +++ + S G+G+V +++ +Q
Sbjct: 48 LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKL 107
Query: 312 PHQ-LDGRTI 338
+ L+G+ I
Sbjct: 108 NYSYLNGKMI 117
Score = 31.9 bits (69), Expect = 0.61
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +1
Query: 403 CSL--GGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFEDEIXVER 567
CSL G L NVT++ L +F +V+ V + D S G+G++++ + E+
Sbjct: 46 CSLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEK 102
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 43.2 bits (97), Expect = 2e-04
Identities = 23/69 (33%), Positives = 32/69 (46%)
Frame = +3
Query: 132 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQNG 311
LF LS+ + +++ +F GEV+D N + G RGFG V FA L+
Sbjct: 299 LFAANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEEAQKALEFH 358
Query: 312 PHQLDGRTI 338
L GR I
Sbjct: 359 GRPLLGREI 367
Score = 31.9 bits (69), Expect = 0.61
Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Frame = +3
Query: 117 DEKGKLFVGGLSWETSQEN----LQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD 278
DEK K+FV G S+++ L+ +FS GE+ + V + ++G S+G ++ F++
Sbjct: 399 DEK-KIFVKGFDASLSEDDIKNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEFSE 455
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 42.7 bits (96), Expect = 3e-04
Identities = 24/80 (30%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Frame = +3
Query: 102 PDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVM-KNSESGRSRGFGFVTFAD 278
P+M D ++++G L+W+T++ ++++ FS VI+ V + KN E+G +G+ V F D
Sbjct: 255 PEMVDGYN-RVYIGNLAWDTTERDIRKLFSDC--VINSVRLGKNKETGEFKGYAHVDFKD 311
Query: 279 PSLVNLVLQNGPHQLDGRTI 338
V + L+ + GR +
Sbjct: 312 SVSVAIALKLDQQVICGRPV 331
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = +3
Query: 99 NPDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 272
N + D KL+VGG+ ++++++ ++ YF G +I E G G F+TF
Sbjct: 152 NKEEDGVVPNKLYVGGIPYQSTEDEIRSYFRSCGVIIKVDCKMRPEDGAFSGIAFITF 209
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 42.7 bits (96), Expect = 3e-04
Identities = 20/51 (39%), Positives = 31/51 (60%)
Frame = +3
Query: 132 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPS 284
L V L + QE+L++ F ++G V D + ++ +G RGFGFV F DP+
Sbjct: 38 LLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPA 88
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 42.3 bits (95), Expect = 4e-04
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Frame = +3
Query: 132 LFVGGLSWETSQENLQRYFS-RYGEVIDCVVMKNSESGRSRGFGFVTFADPS-LVNLVLQ 305
+FVG L+ + S L FS +Y V V+ ++ +GRS+G+GFV F D + + +
Sbjct: 201 IFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTE 260
Query: 306 NGPHQLDGRTIDPKPCNPRTLQKPKRGGGY 395
+ R + P PR ++ GGY
Sbjct: 261 MNGVKCSSRAMRIGPATPRKTNGYQQQGGY 290
Score = 32.7 bits (71), Expect = 0.35
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 201 EVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQ 305
E++ V++N +G S G+GFV F + + VLQ
Sbjct: 130 EIVSLKVIRNKHNGSSEGYGFVEFESHDVADKVLQ 164
Score = 31.5 bits (68), Expect = 0.81
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +3
Query: 132 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD 278
+FVGGL + E+L++ FS +GE++ + +G GFV F +
Sbjct: 308 IFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPV------GKGCGFVQFVN 350
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 41.9 bits (94), Expect = 6e-04
Identities = 16/55 (29%), Positives = 33/55 (60%)
Frame = +3
Query: 132 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNL 296
L++G + + ++ +FS++G V V +N ++G+S+ FGF+ F DP + +
Sbjct: 62 LYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEI 116
Score = 40.3 bits (90), Expect = 0.002
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = +1
Query: 409 LGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFED 549
+G +P ET++ FF ++G V V + ++ KS FGF+ FED
Sbjct: 64 IGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFED 110
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 41.9 bits (94), Expect = 6e-04
Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Frame = +3
Query: 132 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF--ADPSLVNLVLQ 305
++V L + +L+R F +GE+ VVMK+ E G+SR FGFV F A+ ++ +
Sbjct: 121 VYVKNLVETATDADLKRLFGEFGEITSAVVMKDGE-GKSRRFGFVNFEKAEAAVTAIEKM 179
Query: 306 NG 311
NG
Sbjct: 180 NG 181
Score = 39.1 bits (87), Expect = 0.004
Identities = 19/50 (38%), Positives = 30/50 (60%)
Frame = +3
Query: 123 KGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 272
+G +FV L + L FS +G+V+ C V +++ SG S+G+GFV F
Sbjct: 30 RGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDA-SGVSKGYGFVQF 78
Score = 35.9 bits (79), Expect = 0.038
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = +1
Query: 418 LPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFE 546
L T+ DL FG +G++ V+M D + KS FGF++FE
Sbjct: 126 LVETATDADLKRLFGEFGEITSAVVMKD-GEGKSRRFGFVNFE 167
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 41.9 bits (94), Expect = 6e-04
Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Frame = +3
Query: 132 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQNG 311
L+V GLS ++ +L+ +F++ G+V D ++ + + SRGFGF++ N +++
Sbjct: 47 LYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSL 106
Query: 312 PHQ-LDGRTI 338
H L GR I
Sbjct: 107 DHSVLQGRVI 116
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/44 (43%), Positives = 27/44 (61%)
Frame = +1
Query: 415 GLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFE 546
GL VTE DL F + GKV +V ++ D ++S GFGF+S +
Sbjct: 51 GLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMK 94
>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 952
Score = 41.5 bits (93), Expect = 8e-04
Identities = 17/60 (28%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Frame = +3
Query: 99 NPDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMK-NSESGRSRGFGFVTFA 275
NP + ++GK+FVG L + + +F ++G + + +++K + E ++ GFGF+ +A
Sbjct: 156 NPQQEFRQEGKIFVGNLPTWIKKPEFEEFFRQFGPIENVILIKGHHEVEKNAGFGFIIYA 215
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 41.5 bits (93), Expect = 8e-04
Identities = 16/54 (29%), Positives = 33/54 (61%)
Frame = +3
Query: 120 EKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADP 281
+ G+LFV L + ++E L +FS +G++ + ++ + E+ RSRG ++ + P
Sbjct: 259 DTGRLFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILYLIP 312
Score = 38.3 bits (85), Expect = 0.007
Identities = 17/52 (32%), Positives = 29/52 (55%)
Frame = +1
Query: 388 VDTLRCSLGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSF 543
+DT R + LP TE +L F +GK+ EV ++ D+ K+S G ++ +
Sbjct: 258 LDTGRLFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILY 309
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 41.5 bits (93), Expect = 8e-04
Identities = 16/49 (32%), Positives = 32/49 (65%)
Frame = +3
Query: 129 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFA 275
KLFVG + ++E ++ YF ++G V++ ++K+ +G+ +G FV +A
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYA 169
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 41.5 bits (93), Expect = 8e-04
Identities = 16/49 (32%), Positives = 32/49 (65%)
Frame = +3
Query: 129 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFA 275
KLFVG + ++E ++ YF ++G V++ ++K+ +G+ +G FV +A
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYA 169
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 41.5 bits (93), Expect = 8e-04
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Frame = +3
Query: 129 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQ- 305
KLFVG L S+ +Q FS+YG + D +++ ++ S+G F+ + ++
Sbjct: 107 KLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQ-TSKGCAFLKYETKEQAVSAMES 165
Query: 306 -NGPHQLDGRTI 338
NG H+++G T+
Sbjct: 166 INGKHKMEGSTV 177
Score = 32.7 bits (71), Expect = 0.35
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = +1
Query: 409 LGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFE 546
+G LP NV+E ++ F +YG + ++ I+ ++ S G FL +E
Sbjct: 110 VGMLPKNVSEAEVQSLFSKYGTIKDLQILRG-AQQTSKGCAFLKYE 154
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = +3
Query: 111 DDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFV 266
+++E KLFVG + S+ L F + V + ++K+ + SRG F+
Sbjct: 13 EEEESVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFL 64
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 41.5 bits (93), Expect = 8e-04
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Frame = +3
Query: 129 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQ- 305
KLFVG L S+ +Q FS+YG + D +++ ++ S+G F+ + ++
Sbjct: 107 KLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQ-TSKGCAFLKYETKEQAVSAMES 165
Query: 306 -NGPHQLDGRTI 338
NG H+++G T+
Sbjct: 166 INGKHKMEGSTV 177
Score = 32.7 bits (71), Expect = 0.35
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = +1
Query: 409 LGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFE 546
+G LP NV+E ++ F +YG + ++ I+ ++ S G FL +E
Sbjct: 110 VGMLPKNVSEAEVQSLFSKYGTIKDLQILRG-AQQTSKGCAFLKYE 154
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = +3
Query: 111 DDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFV 266
+++E KLFVG + S+ L F + V + ++K+ + SRG F+
Sbjct: 13 EEEESVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFL 64
>At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 177
Score = 41.5 bits (93), Expect = 8e-04
Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Frame = +3
Query: 120 EKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLV 299
+K L+VGGL+ E ++ L F +G++ D + + + R FGFVTF + +
Sbjct: 11 QKNTLYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAA 70
Query: 300 LQN-GPHQLDGRTIDPKPCNPRTLQKPKRG 386
+ N +L GR + P ++ ++G
Sbjct: 71 MDNMDGAELYGRVLTVNYALPEKIKGGEQG 100
Score = 33.9 bits (74), Expect = 0.15
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +1
Query: 409 LGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSF 543
+GGL V E+ L F +G + +V DQ +K FGF++F
Sbjct: 17 VGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTF 61
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 41.1 bits (92), Expect = 0.001
Identities = 32/78 (41%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Frame = +3
Query: 114 DDEKG--KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSL 287
DD G +L+VG LS T +L+R FSRYG V D V MK R + FV F+DP
Sbjct: 5 DDRYGNTRLYVGRLSSRTRTRDLERLFSRYGRVRD-VDMK-------RDYAFVEFSDPRD 56
Query: 288 VNLVLQNGPHQLDGRTID 341
+ + + LDGR D
Sbjct: 57 AD----DARYYLDGRDFD 70
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 40.7 bits (91), Expect = 0.001
Identities = 23/88 (26%), Positives = 49/88 (55%), Gaps = 3/88 (3%)
Frame = +3
Query: 129 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQ- 305
++FVGGL + ++ ++ +G + ++K+ E+G S+G+ F + D S+ ++
Sbjct: 360 RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 419
Query: 306 -NGPHQLDGRTIDPKPCNPRT-LQKPKR 383
NG ++ +T+ + N T LQKP++
Sbjct: 420 LNG-IKMGDKTLTVRRANQGTMLQKPEQ 446
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 40.7 bits (91), Expect = 0.001
Identities = 23/88 (26%), Positives = 49/88 (55%), Gaps = 3/88 (3%)
Frame = +3
Query: 129 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQ- 305
++FVGGL + ++ ++ +G + ++K+ E+G S+G+ F + D S+ ++
Sbjct: 360 RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 419
Query: 306 -NGPHQLDGRTIDPKPCNPRT-LQKPKR 383
NG ++ +T+ + N T LQKP++
Sbjct: 420 LNG-IKMGDKTLTVRRANQGTMLQKPEQ 446
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 40.7 bits (91), Expect = 0.001
Identities = 23/88 (26%), Positives = 49/88 (55%), Gaps = 3/88 (3%)
Frame = +3
Query: 129 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQ- 305
++FVGGL + ++ ++ +G + ++K+ E+G S+G+ F + D S+ ++
Sbjct: 360 RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 419
Query: 306 -NGPHQLDGRTIDPKPCNPRT-LQKPKR 383
NG ++ +T+ + N T LQKP++
Sbjct: 420 LNG-IKMGDKTLTVRRANQGTMLQKPEQ 446
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/78 (25%), Positives = 45/78 (57%)
Frame = +3
Query: 129 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN 308
+LF G L E + + L + F+R+ V+++ +G+++G+GFV+F +P+ + L+
Sbjct: 138 RLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLAAALK- 196
Query: 309 GPHQLDGRTIDPKPCNPR 362
+++G+ + +P R
Sbjct: 197 ---EMNGKYVGNRPIKLR 211
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 40.7 bits (91), Expect = 0.001
Identities = 15/56 (26%), Positives = 34/56 (60%)
Frame = +3
Query: 129 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNL 296
++FVGGL + ++ ++ +G + ++K+ E+G S+G+ F + DPS+ ++
Sbjct: 376 RIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDI 431
>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
protein
Length = 710
Score = 40.3 bits (90), Expect = 0.002
Identities = 23/74 (31%), Positives = 34/74 (45%)
Frame = +3
Query: 132 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQNG 311
LFVG L W T+ L+ +YG V + SG+S+G+ V F DP +
Sbjct: 236 LFVGDLHWWTTDAELEAELCKYGAVKEVKFFDEKASGKSKGYCQVEFYDPVAASAC---- 291
Query: 312 PHQLDGRTIDPKPC 353
L+G + +PC
Sbjct: 292 KDALNGYPFNGRPC 305
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 40.3 bits (90), Expect = 0.002
Identities = 23/64 (35%), Positives = 32/64 (50%)
Frame = +3
Query: 117 DEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNL 296
D+ L+VG L + L FS GEV V++N + +S G+GFV F +
Sbjct: 105 DDVKTLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEE 164
Query: 297 VLQN 308
VLQN
Sbjct: 165 VLQN 168
Score = 39.9 bits (89), Expect = 0.002
Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +3
Query: 132 LFVGGLSWETSQENLQRYFS-RYGEVIDCVVMKNSESGRSRGFGFVTFAD 278
+FVG LS + + L FS RY V V+ +S +GRS+G+GFV F D
Sbjct: 204 VFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGD 253
Score = 34.3 bits (75), Expect = 0.11
Identities = 18/49 (36%), Positives = 29/49 (59%)
Frame = +3
Query: 132 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD 278
+FVGG+ + E+L++ FS++GEV+ + +G GFV FAD
Sbjct: 323 IFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPV------GKGCGFVQFAD 365
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/63 (28%), Positives = 33/63 (52%)
Frame = +3
Query: 117 DEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNL 296
+E L++G L + + L FS+ GE++ V++N +G+ G+GF+ F +
Sbjct: 21 EEVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAER 80
Query: 297 VLQ 305
LQ
Sbjct: 81 TLQ 83
Score = 37.9 bits (84), Expect = 0.009
Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 1/97 (1%)
Frame = +3
Query: 132 LFVGGLSWETSQENLQRYFS-RYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN 308
+FVG L+ + + LQ F Y V V+ + +GRS+G+GFV FA+ S N +
Sbjct: 118 IFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMA- 176
Query: 309 GPHQLDGRTIDPKPCNPRTLQKPKRGGGYPKVFLGRA 419
+++G +P + PK+ G + ++ +A
Sbjct: 177 ---EMNGLYCSTRPMR-ISAATPKKNVGVQQQYVTKA 209
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/48 (35%), Positives = 30/48 (62%)
Frame = +3
Query: 132 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFA 275
L+V GLS + ++L+ +F++ G+V C ++ + SRGF FVT +
Sbjct: 74 LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMS 121
Score = 33.5 bits (73), Expect = 0.20
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +1
Query: 415 GLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFEDEIXVER 567
GL + VT+ DL F + GKV ++ + + S GF F++ ER
Sbjct: 78 GLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAER 128
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/48 (35%), Positives = 30/48 (62%)
Frame = +3
Query: 132 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFA 275
L+V GLS + ++L+ +F++ G+V C ++ + SRGF FVT +
Sbjct: 73 LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMS 120
Score = 33.5 bits (73), Expect = 0.20
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +1
Query: 415 GLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFEDEIXVER 567
GL + VT+ DL F + GKV ++ + + S GF F++ ER
Sbjct: 77 GLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAER 127
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +3
Query: 126 GKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD 278
G L V + + E L+ F R+G V D + ++ SG+ RGF FV F D
Sbjct: 47 GSLLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVD 97
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 39.9 bits (89), Expect = 0.002
Identities = 15/53 (28%), Positives = 32/53 (60%)
Frame = +3
Query: 129 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSL 287
++++GG+ + ++ +L+ + GEV + +M+ +SG +G+ FVTF L
Sbjct: 93 EVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDL 145
Score = 35.1 bits (77), Expect = 0.066
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +1
Query: 418 LPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFEDEIXVERVTPRT 582
LP ++T+ L F +GK+++VVI + K+ +GF+ + + V R T
Sbjct: 275 LPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYAERTSVMRALKNT 329
>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GI:7673355 from [Nicotiana tabacum]; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 620
Score = 39.1 bits (87), Expect = 0.004
Identities = 22/59 (37%), Positives = 32/59 (54%)
Frame = +3
Query: 132 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN 308
LFV LS +T ++ +F+ GEV+ +M N E G+ G+GFV FA L+N
Sbjct: 246 LFVANLSPQTKISDIFDFFNCVGEVVSIRLMVNHE-GKHVGYGFVEFASADETKKALEN 303
Score = 35.9 bits (79), Expect = 0.038
Identities = 21/58 (36%), Positives = 31/58 (53%)
Frame = +3
Query: 132 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQ 305
LFV L +ET N+ +F + GEV+ ++ N + G+ G GFV FA + LQ
Sbjct: 129 LFVANLPYETKIPNIIDFFKKVGEVVRVQLIVNLK-GKLVGCGFVEFASVNEAEEALQ 185
Score = 29.9 bits (64), Expect = 2.5
Identities = 20/61 (32%), Positives = 28/61 (45%)
Frame = +3
Query: 123 KGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVL 302
K LFV LS T ++ ++F EV+ ++ N G G GFV FA + L
Sbjct: 488 KKTLFVANLSPRTKISHIIKFFKDVAEVVRVRLIVN-HRGEHVGCGFVEFASVNEAQKAL 546
Query: 303 Q 305
Q
Sbjct: 547 Q 547
Score = 29.1 bits (62), Expect = 4.3
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +3
Query: 123 KGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLV 299
K LFV LS +T ++ +F GEV+ ++ N +G+ G FV F + +V
Sbjct: 358 KKTLFVAHLSRKTEITHIINFFKDVGEVVHVRLILN-HTGKHVGCAFVEFGSANEAKMV 415
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 39.1 bits (87), Expect = 0.004
Identities = 17/47 (36%), Positives = 29/47 (61%)
Frame = +3
Query: 132 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 272
LFV G S S+ L++ FS +G+V + ++ N + +S G+G+V F
Sbjct: 60 LFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWF 106
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 39.1 bits (87), Expect = 0.004
Identities = 17/47 (36%), Positives = 29/47 (61%)
Frame = +3
Query: 132 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 272
LFV G S S+ L++ FS +G+V + ++ N + +S G+G+V F
Sbjct: 79 LFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWF 125
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 39.1 bits (87), Expect = 0.004
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Frame = +3
Query: 102 PDMDDDE--KGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFA 275
P++ ++E K +L + W ++ E+++ F +YG VID + M + R+RG F+ A
Sbjct: 84 PEVVEEEISKTRLIAQNVPWTSTPEDIRSLFEKYGSVID-IEMSMHKKERNRGLVFIEMA 142
Query: 276 DP 281
P
Sbjct: 143 SP 144
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 39.1 bits (87), Expect = 0.004
Identities = 24/101 (23%), Positives = 49/101 (48%), Gaps = 3/101 (2%)
Frame = +3
Query: 99 NPDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD 278
+P+ D LFV L++E+S+ ++R F YG + ++ + + + +G+ F+ +
Sbjct: 129 DPNATGDPYKTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMH 188
Query: 279 PSLVNLVLQNGPHQ-LDGRTIDPKPCNPRTLQ--KPKRGGG 392
+ + Q +DGR + RT+ +P+R GG
Sbjct: 189 TRDMKAAYKQADGQKIDGRRVLVDVERGRTVPNWRPRRLGG 229
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 38.7 bits (86), Expect = 0.005
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Frame = +3
Query: 138 VGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQNGPH 317
V GLS ++++E+L + + +G + V++ SG SRGF F+ F ++ H
Sbjct: 302 VKGLSMKSTEEDLYQILAEWGPLHHVRVIREQNSGISRGFAFIDFPTVDAARTMMDRIEH 361
Query: 318 Q---LDGRTI 338
LDGR +
Sbjct: 362 DGIVLDGRKL 371
Score = 31.5 bits (68), Expect = 0.81
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +3
Query: 132 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 272
L V GL + +E L+ FS++ + D ++++ + SRGF FV F
Sbjct: 460 LVVRGLDEDADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHF 506
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 38.3 bits (85), Expect = 0.007
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Frame = +3
Query: 132 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQNG 311
L++ L + S+E L FS +G+VI V+ K+ G SRGF F+ F + +
Sbjct: 19 LYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKDFR-GESRGFAFIEFESADSAGRAMLH- 76
Query: 312 PHQLDGRTIDPK-PCNPRT 365
+DGR I K C RT
Sbjct: 77 ---MDGRLIGQKILCVQRT 92
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 38.3 bits (85), Expect = 0.007
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = +3
Query: 120 EKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF-ADPSLVNL 296
+K KL + L ++ +++ FS G V D + KN E+G +GF FV F N
Sbjct: 329 QKWKLIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKFTCKKDAANA 388
Query: 297 VLQNGPHQLDGRTI 338
+ + H R I
Sbjct: 389 IKKFNGHMFGKRPI 402
Score = 32.7 bits (71), Expect = 0.35
Identities = 18/61 (29%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Frame = +3
Query: 111 DDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF--ADPS 284
+DD + LF+ L ++ ++E +++ F+ +GEV ++ + + R G FV F AD S
Sbjct: 556 NDDFERTLFIRNLPFDVTKEEVKQRFTVFGEVESLSLVLHKVTKRPEGTAFVKFKTADAS 615
Query: 285 L 287
+
Sbjct: 616 V 616
Score = 29.1 bits (62), Expect = 4.3
Identities = 14/53 (26%), Positives = 24/53 (45%)
Frame = +1
Query: 409 LGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFEDEIXVER 567
+ GLP ++T L F G V ++ ++ + GF F+ F + V R
Sbjct: 24 VSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHRGFAFVKFALQEDVNR 76
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 38.3 bits (85), Expect = 0.007
Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +3
Query: 132 LFVGGLSWETSQENLQRYFS-RYGEVIDCVVMKNSESGRSRGFGFVTFAD 278
+FVG L+ + S L F+ RY V V+ +S +GRS+G+GFV F D
Sbjct: 215 IFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGD 264
Score = 36.3 bits (80), Expect = 0.028
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Frame = +3
Query: 99 NPDMDDDEKGK--LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 272
N M D E +FVGGL + ++E+L + FS +GEV+ + +G GFV F
Sbjct: 316 NGSMSDGESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKIPV------GKGCGFVQF 369
Query: 273 AD 278
A+
Sbjct: 370 AN 371
Score = 32.3 bits (70), Expect = 0.46
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +1
Query: 409 LGGLPSNVTETDLX-VFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFEDE 552
+G L +V++ L F GRY V ++ D +S G+GF+ F DE
Sbjct: 217 VGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDE 265
Score = 27.9 bits (59), Expect = 10.0
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +1
Query: 409 LGGLPSNVTETDLXVFFGRYGKVMEVVI 492
+GGL ++VTE DL F +G+V+ V I
Sbjct: 331 VGGLDADVTEEDLMQPFSDFGEVVSVKI 358
>At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing
protein
Length = 573
Score = 38.3 bits (85), Expect = 0.007
Identities = 19/55 (34%), Positives = 28/55 (50%)
Frame = +3
Query: 114 DDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD 278
D+ LFVG L W T+ ++ S+YG V + SG+S+G+ V F D
Sbjct: 198 DNGNTMLFVGELHWWTTDAEIESVLSQYGRVKEIKFFDERVSGKSKGYCQVEFYD 252
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 37.9 bits (84), Expect = 0.009
Identities = 17/53 (32%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Frame = +3
Query: 117 DEKGKLFVGGLSWETSQENLQRYFSRYGEVI-DCVVMKNSESGRSRGFGFVTF 272
D LF+G L + ++ L FS +G + + +M++ ++G SRGFGF+++
Sbjct: 109 DVGANLFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISY 161
Score = 28.3 bits (60), Expect = 7.5
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +1
Query: 409 LGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFEDE 552
+GGL + ++E L F + G V+ V + D+ +GF+ + E
Sbjct: 29 VGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSE 76
>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
similar to cleavage stimulation factor 64 kilodalton
subunit GB:AAD47839 GI:5713194 from [Drosophila
melanogaster], SP|P33240 Cleavage stimulation factor, 64
kDa subunit {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 461
Score = 37.9 bits (84), Expect = 0.009
Identities = 16/70 (22%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Frame = +3
Query: 132 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN- 308
+FVG + ++ ++E L+ G V+ ++ + E+G+ +G+GF + D +N
Sbjct: 11 VFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNL 70
Query: 309 GPHQLDGRTI 338
++++GR +
Sbjct: 71 QSYEINGRQL 80
Score = 35.1 bits (77), Expect = 0.066
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +1
Query: 400 RCS-LGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFEDE 552
RC +G +P + TE L G G V+ ++ D+ K G+GF ++DE
Sbjct: 9 RCVFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDE 60
>At1g13730.1 68414.m01612 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 428
Score = 37.9 bits (84), Expect = 0.009
Identities = 30/102 (29%), Positives = 44/102 (43%), Gaps = 6/102 (5%)
Frame = +3
Query: 108 MDDDEKG-KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPS 284
+D +G +FV L + + E L F +G + + S + FGFVTFA
Sbjct: 270 IDQQAEGYTIFVANLLMDATPEQLNETFKGFGAITKDGIQVRSYRLKGNCFGFVTFASAE 329
Query: 285 LVNLVLQ---NGPHQLDGR--TIDPKPCNPRTLQKPKRGGGY 395
V LVLQ ++ R +I+ K N + R GGY
Sbjct: 330 AVKLVLQAHKESAIRIGNRRVSIEEKRGNNDNGRPAMRNGGY 371
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 37.5 bits (83), Expect = 0.012
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +3
Query: 132 LFVGGLSWETSQENLQRYFSR-YGEVIDCVVMKNSESGRSRGFGFVTFADPS 284
+FVG L+ + + L F Y V V+ + +GRS+G+GFV FAD S
Sbjct: 175 VFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADES 226
Score = 28.3 bits (60), Expect = 7.5
Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 9/108 (8%)
Frame = +3
Query: 99 NPDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD 278
N D +FVG + ++++L+ F ++GE++ + +G+ GFV +A+
Sbjct: 269 NSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGELVHVKI----PAGKR--CGFVQYAN 322
Query: 279 PSLVNLVLQ--NGPHQLDGRTI----DPKPCNPRTLQKPKR---GGGY 395
+ L NG QL G++I P N +T + GGGY
Sbjct: 323 RACAEQALSVLNGT-QLGGQSIRLSWGRSPSNKQTQPDQAQYGGGGGY 369
>At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing
protein low similarity to tumor-rejection antigen SART3
[Mus musculus] GI:7637845; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 817
Score = 37.1 bits (82), Expect = 0.016
Identities = 17/80 (21%), Positives = 37/80 (46%)
Frame = +3
Query: 135 FVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQNGP 314
F+ LS + +E+++++F G V ++ + ++G+ RG + F D + +
Sbjct: 654 FISNLSVKAQEEDIRKFFGDDGGVDSIRILHHKDTGKPRGLAYADFVDDEHLAAAIAKNR 713
Query: 315 HQLDGRTIDPKPCNPRTLQK 374
G+ I NP+ +K
Sbjct: 714 KMFFGKKISIARSNPKKGKK 733
>At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing
protein low similarity to tumor-rejection antigen SART3
[Mus musculus] GI:7637845; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 816
Score = 37.1 bits (82), Expect = 0.016
Identities = 17/80 (21%), Positives = 37/80 (46%)
Frame = +3
Query: 135 FVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQNGP 314
F+ LS + +E+++++F G V ++ + ++G+ RG + F D + +
Sbjct: 654 FISNLSVKAQEEDIRKFFGDDGGVDSIRILHHKDTGKPRGLAYADFVDDEHLAAAIAKNR 713
Query: 315 HQLDGRTIDPKPCNPRTLQK 374
G+ I NP+ +K
Sbjct: 714 KMFFGKKISIARSNPKKGKK 733
>At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 674
Score = 37.1 bits (82), Expect = 0.016
Identities = 12/55 (21%), Positives = 33/55 (60%)
Frame = +3
Query: 108 MDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 272
++D +FV + + ++++L R+F+++GEV+ ++ + +G+ G ++ F
Sbjct: 510 LEDASSRTIFVANVHFGATKDSLSRHFNKFGEVLKAFIVTDPATGQPSGSAYIEF 564
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 36.7 bits (81), Expect = 0.022
Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Frame = +3
Query: 111 DDDEKGKLFVGGLSWETSQENLQRYFSRYGEVI----DCVVMKNSESGRSRGFGFVTF 272
D +FVG LS E + L FS + D VM + ++GRSRGFGFV+F
Sbjct: 143 DTSSHFNIFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSF 200
Score = 30.7 bits (66), Expect = 1.4
Identities = 21/63 (33%), Positives = 30/63 (47%)
Frame = +3
Query: 132 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQNG 311
++VG LS E +Q +L R F G V++ R +GFGFV + L +Q G
Sbjct: 275 VYVGNLSPEVTQLDLHRLFYTLG----AGVIEEVRVQRDKGFGFVRYNTHDEAALAIQMG 330
Query: 312 PHQ 320
Q
Sbjct: 331 NAQ 333
Score = 29.5 bits (63), Expect = 3.3
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Frame = +1
Query: 409 LGGLPSNVTETDLXVFFGRYGKVM----EVVIMYDQXKKKSXGFGFLSFEDE 552
+G L VT+ L F + + +M+DQ +S GFGF+SF ++
Sbjct: 152 VGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFRNQ 203
>At3g51950.1 68416.m05698 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM), PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 540
Score = 36.3 bits (80), Expect = 0.028
Identities = 30/91 (32%), Positives = 40/91 (43%), Gaps = 2/91 (2%)
Frame = +3
Query: 165 QENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQNG-PHQLDGRTID 341
+E++ YFS +G V D + + R FGFVTF P V +L G PH +
Sbjct: 272 EEDVSNYFSTFGPVQDVRIPYQQK----RMFGFVTFVYPETVKSILAKGNPHFV------ 321
Query: 342 PKPCNPRTLQKP-KRGGGYPKVFLGRAAIER 431
C+ R L KP K G P + ER
Sbjct: 322 ---CDSRVLVKPYKEKGKVPDKYRTNQTTER 349
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 35.9 bits (79), Expect = 0.038
Identities = 18/51 (35%), Positives = 28/51 (54%)
Frame = +3
Query: 120 EKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 272
++ + V LS +T +L F +G V C V + ++ SRGFGFV+F
Sbjct: 172 DENSVRVTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSF 222
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 35.9 bits (79), Expect = 0.038
Identities = 18/52 (34%), Positives = 29/52 (55%)
Frame = +3
Query: 117 DEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 272
+++ + V LS +T + +L F +G V V + ++G SRGFGFV F
Sbjct: 210 NDENSVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNF 261
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 35.9 bits (79), Expect = 0.038
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Frame = +3
Query: 105 DMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF--AD 278
D + + KLFVG L S+ +Q FS YG + D +++ S S+G F+ + +
Sbjct: 102 DCSCNPEHKLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQ-TSKGCLFLKYESKE 160
Query: 279 PSLVNLVLQNGPHQLDGRTI 338
++ + NG H ++G +
Sbjct: 161 QAVAAMEALNGRHIMEGANV 180
Score = 32.3 bits (70), Expect = 0.46
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +1
Query: 409 LGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFEDE 552
+G LP NV+ET++ F YG + ++ I+ + S G FL +E +
Sbjct: 113 VGMLPKNVSETEVQSLFSEYGTIKDLQILRGSL-QTSKGCLFLKYESK 159
Score = 29.5 bits (63), Expect = 3.3
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +1
Query: 418 LPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFEDE 552
+P + +L F +GKV+ + D+ S FGF+S++ +
Sbjct: 346 IPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQ 390
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 35.5 bits (78), Expect = 0.050
Identities = 21/49 (42%), Positives = 28/49 (57%)
Frame = +3
Query: 132 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD 278
+FVG +ET Q +L+R F +YG V D V MK+ G+ FV F D
Sbjct: 4 VFVGNFEYETRQSDLERLFDKYGRV-DRVDMKS-------GYAFVYFED 44
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 35.5 bits (78), Expect = 0.050
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Frame = +3
Query: 129 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF--ADPSLVNLVL 302
KLFVG L S+ +Q FS YG + D +++ S S+G F+ + + ++ +
Sbjct: 101 KLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQ-TSKGCLFLKYESKEQAVAAMEA 159
Query: 303 QNGPHQLDGRTI 338
NG H ++G +
Sbjct: 160 LNGRHIMEGANV 171
Score = 32.3 bits (70), Expect = 0.46
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +1
Query: 409 LGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFEDE 552
+G LP NV+ET++ F YG + ++ I+ + S G FL +E +
Sbjct: 104 VGMLPKNVSETEVQSLFSEYGTIKDLQILRGSL-QTSKGCLFLKYESK 150
Score = 29.5 bits (63), Expect = 3.3
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +1
Query: 418 LPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFEDE 552
+P + +L F +GKV+ + D+ S FGF+S++ +
Sbjct: 337 IPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQ 381
>At5g28390.1 68418.m03447 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 180
Score = 35.1 bits (77), Expect = 0.066
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +1
Query: 418 LPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFEDEIXVERVTPRT 582
LP ++T+ L F +GK+++VVI + K+ +GF+ + + V R T
Sbjct: 41 LPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYAERTSVMRALKNT 95
>At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing
protein KIAA0332 - Homo sapiens, EMBL:AB002330
Length = 946
Score = 35.1 bits (77), Expect = 0.066
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Frame = +3
Query: 105 DMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVM---KNSESGRSRGFGFVTF 272
D D + L+VG LS + + L R F R+G + +M + E R R GFV+F
Sbjct: 172 DDGDPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTDEEKRRQRNCGFVSF 230
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 34.7 bits (76), Expect = 0.087
Identities = 17/47 (36%), Positives = 28/47 (59%)
Frame = +3
Query: 132 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 272
LFV L+ T E+L FSR+G V+ V+++ ++G S + F+ F
Sbjct: 245 LFVCKLNPVTEDEDLHTIFSRFGTVVSADVIRDFKTGDSLCYAFIEF 291
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 34.3 bits (75), Expect = 0.11
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Frame = +3
Query: 90 MRMNPDMDDDEKGK---LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFG 260
+R P D E L + L + +L+ F R+G + D + +N +G RGFG
Sbjct: 32 LRERPSSRDHESSGPSGLLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFG 91
Query: 261 FVTF 272
FV +
Sbjct: 92 FVKY 95
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 33.9 bits (74), Expect = 0.15
Identities = 26/96 (27%), Positives = 39/96 (40%), Gaps = 6/96 (6%)
Frame = +3
Query: 132 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF---ADPSLVNLVL 302
L V LS ++ +L+ F +GEVI + + RG G+V F AD L +
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYM 159
Query: 303 QNGPHQLDGRTIDPK---PCNPRTLQKPKRGGGYPK 401
Q+DG+ + P + PK PK
Sbjct: 160 DGA--QIDGKVVKATFTLPPRQKVSSPPKPVSAAPK 193
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 33.9 bits (74), Expect = 0.15
Identities = 26/96 (27%), Positives = 39/96 (40%), Gaps = 6/96 (6%)
Frame = +3
Query: 132 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF---ADPSLVNLVL 302
L V LS ++ +L+ F +GEVI + + RG G+V F AD L +
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYM 159
Query: 303 QNGPHQLDGRTIDPK---PCNPRTLQKPKRGGGYPK 401
Q+DG+ + P + PK PK
Sbjct: 160 DGA--QIDGKVVKATFTLPPRQKVSSPPKPVSAAPK 193
>At3g63450.1 68416.m07144 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 399
Score = 33.5 bits (73), Expect = 0.20
Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Frame = +3
Query: 165 QENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQNG-PHQLDGRTID 341
+E++ YFS +G V D + + R FGFVTF P V +L G PH +
Sbjct: 169 EEDVSDYFSTFGPVQDVRIPYQQK----RMFGFVTFMYPETVKSILAKGNPHFV------ 218
Query: 342 PKPCNPRTLQKPKRGGG 392
C+ R L KP + G
Sbjct: 219 ---CHSRVLVKPYKEKG 232
>At2g05160.1 68415.m00543 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 536
Score = 33.5 bits (73), Expect = 0.20
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = +3
Query: 162 SQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQNG-PHQLDGRTI 338
++ ++ YF+ YG V D + + R +GFVTFA V +L G PH +
Sbjct: 330 TEHDVSIYFTSYGHVEDVRI----PCQQKRMYGFVTFASSETVKHILAKGNPHFI----- 380
Query: 339 DPKPCNPRTLQKPKR 383
CN R L KP R
Sbjct: 381 ----CNARVLVKPYR 391
>At5g44200.1 68418.m05408 nuclear cap-binding protein, putative
similar to SP|P52298 20 kDa nuclear cap binding protein
(CBP20) (NCBP interacting protein 1) {Homo sapiens};
non-consensus AT donor splice site at exon 4, AC
acceptor splice site at exon 5; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 257
Score = 33.1 bits (72), Expect = 0.26
Identities = 15/47 (31%), Positives = 27/47 (57%)
Frame = +3
Query: 132 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 272
+++G +S+ T++E L FSR GE+ ++ + + GF FV F
Sbjct: 36 VYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLF 82
>At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 451
Score = 33.1 bits (72), Expect = 0.26
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +3
Query: 150 SWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 272
S ++E L+ FSR GE+ D V +K G+SR F ++ F
Sbjct: 11 SKHVTEERLRDVFSRKGEIAD-VKLKRKSDGKSRQFAYIGF 50
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 33.1 bits (72), Expect = 0.26
Identities = 13/56 (23%), Positives = 30/56 (53%)
Frame = +3
Query: 105 DMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 272
D D KL+V +S ++ ++++ F +YG V + ++ K+ +G + F+ +
Sbjct: 103 DNADGSIAKLYVAPISKTATEYDIRQVFEKYGNVTEIILPKDKMTGERAAYCFIKY 158
Score = 32.7 bits (71), Expect = 0.35
Identities = 17/49 (34%), Positives = 29/49 (59%)
Frame = +3
Query: 129 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFA 275
KL+V L+ +T++ + FSRYG +I+ + M + RG+ FV F+
Sbjct: 208 KLYVRCLNKQTTKMEVNEVFSRYG-IIEDIYMALDDMKICRGYAFVQFS 255
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 32.7 bits (71), Expect = 0.35
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +1
Query: 370 KNRNVAVDTLRC-SLGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFE 546
+ R + TL C S GL + T+ L F + ++++ DQ ++ GFGF++FE
Sbjct: 61 RRRLIGGKTLTCVSNSGLSAYTTDQSLRQLFAPFARLIK-----DQQTQRPKGFGFITFE 115
Query: 547 DE 552
E
Sbjct: 116 SE 117
Score = 31.5 bits (68), Expect = 0.81
Identities = 15/43 (34%), Positives = 28/43 (65%)
Frame = +3
Query: 144 GLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 272
GLS T+ ++L++ F+ + +I K+ ++ R +GFGF+TF
Sbjct: 77 GLSAYTTDQSLRQLFAPFARLI-----KDQQTQRPKGFGFITF 114
>At3g21100.1 68416.m02667 RNA recognition motif (RRM)-containing
protein contains Pfam profile:PF00076 RNA recognition
motif
Length = 602
Score = 32.7 bits (71), Expect = 0.35
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Frame = +3
Query: 162 SQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQNG-PHQL-DGRT 335
+ E++ YF +G V D + + R FGFVTF V ++L G PH + D R
Sbjct: 331 TDEDVSNYFGNFGPVQDVRIPYQQK----RMFGFVTFLHSETVRIILARGNPHFICDSRV 386
Query: 336 -IDPKPCNPRTLQK 374
+ P R L+K
Sbjct: 387 LVKPYKEKGRILEK 400
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +1
Query: 424 SNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSF 543
S+ T+ D+ +FG +G V +V I Y Q + FGF++F
Sbjct: 328 SSFTDEDVSNYFGNFGPVQDVRIPYQQKRM----FGFVTF 363
>At3g14450.1 68416.m01831 RNA-binding protein, putative contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) (2 copies)
Length = 327
Score = 32.3 bits (70), Expect = 0.46
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +3
Query: 111 DDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD 278
+D + ++V + ++E L FS G+V+DC + + S F FV FAD
Sbjct: 136 EDSIRRTVYVSDIDQSVTEEGLAGLFSNCGQVVDCRICGDPHS--VLRFAFVEFAD 189
>At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
EMBL:D86122
Length = 915
Score = 31.9 bits (69), Expect = 0.61
Identities = 15/36 (41%), Positives = 16/36 (44%)
Frame = +3
Query: 99 NPDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEV 206
NP D KG L V L S + L R YGEV
Sbjct: 293 NPSQKDTSKGALLVNNLDSSISNQELNRLVKSYGEV 328
>At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing
protein similar to SP|P52298 20 kDa nuclear cap binding
protein (NCBP 20 kDa subunit) (CBP20) (NCBP interacting
protein 1) (NIP1) {Homo sapiens}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 124
Score = 31.9 bits (69), Expect = 0.61
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +1
Query: 418 LPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFED 549
LP N+T ++ FG+YG + ++ I D K + G F+ +ED
Sbjct: 26 LPFNITSEEMYDIFGKYGAIRQIRIGCD---KATKGTAFVVYED 66
>At3g01150.1 68416.m00019 polypyrimidine tract-binding protein,
putative / heterogeneous nuclear ribonucleoprotein,
putative similar to Polypyrimidine tract-binding protein
1 (PTB) (Heterogeneous nuclear ribonucleoprotein I)
(hnRNP I) from {Sus scrofa} SP|Q29099, {Mus musculus}
SP|P17225; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 399
Score = 31.5 bits (68), Expect = 0.81
Identities = 35/137 (25%), Positives = 56/137 (40%), Gaps = 6/137 (4%)
Frame = +3
Query: 147 LSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD----PSLVNLVLQNG- 311
L WE +E L R+G++++ S G +R FV FAD S+V+ +
Sbjct: 24 LPWECVEEELIDLCKRFGKIVN----TKSNVGANRNQAFVEFADLNQAISMVSYYASSSE 79
Query: 312 PHQLDGRTIDPKPCNPRTLQKPKRGGGYP-KVFLGRAAIERYRNRSQXIFRTLWEGHGGG 488
P Q+ G+T+ + N + + G P V L S + ++ G
Sbjct: 80 PAQIRGKTVYIQYSNRHEIVNNQSPGDVPGNVLLVTFEGVESHEVSIDVIHLVFSAFGFV 139
Query: 489 HYV*SRXEKVXGFWILV 539
H + + EK GF LV
Sbjct: 140 HKI-ATFEKAAGFQALV 155
>At1g53650.1 68414.m06105 RNA-binding protein, putative similar to
RNA-binding protein GB:AAA86641 GI:1174153 from
[Arabidopsis thaliana]
Length = 314
Score = 31.1 bits (67), Expect = 1.1
Identities = 17/64 (26%), Positives = 29/64 (45%)
Frame = +3
Query: 87 GMRMNPDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFV 266
G +D + ++V + ++E L FS G+V+DC + + S F FV
Sbjct: 115 GRASKAQREDSIRRTVYVSDIDQSVTEEGLAGLFSSCGQVVDCRICGDPNS--VLRFAFV 172
Query: 267 TFAD 278
F+D
Sbjct: 173 EFSD 176
>At1g51520.2 68414.m05799 expressed protein contains a weak hit to
PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 513
Score = 30.3 bits (65), Expect = 1.9
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Frame = +3
Query: 162 SQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQNG-PHQL-DGRT 335
+ E++ YF +G V D + + R +GFVTFA V +L G PH + D R
Sbjct: 279 TDEDVSTYFRDFGLVDDVRIPYQQQ----RMYGFVTFAKAETVRTILARGNPHFICDSRV 334
Query: 336 -IDPKPCNPRTLQK 374
+ P + LQK
Sbjct: 335 LVKPYKEKGKILQK 348
>At1g51520.1 68414.m05798 expressed protein contains a weak hit to
PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 414
Score = 30.3 bits (65), Expect = 1.9
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Frame = +3
Query: 162 SQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQNG-PHQL-DGRT 335
+ E++ YF +G V D + + R +GFVTFA V +L G PH + D R
Sbjct: 279 TDEDVSTYFRDFGLVDDVRIPYQQQ----RMYGFVTFAKAETVRTILARGNPHFICDSRV 334
Query: 336 -IDPKPCNPRTLQK 374
+ P + LQK
Sbjct: 335 LVKPYKEKGKILQK 348
>At3g50670.2 68416.m05543 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 204
Score = 29.9 bits (64), Expect = 2.5
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = +3
Query: 99 NPDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSR 251
+P+ D LFV L++E+S+ ++R F YG + ++S +G R
Sbjct: 129 DPNATGDPYKTLFVSRLNYESSESKIKREFESYGPIKRVGYSEHSLAGSVR 179
>At3g49390.1 68416.m05399 RNA-binding protein, putative RNA-binding
protein RBP37, Arabidopsis thaliana, PIR:T04196
Length = 353
Score = 29.9 bits (64), Expect = 2.5
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = +3
Query: 111 DDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD 278
DD + ++V + + ++ENL F G+V+DC V + S F F+ F +
Sbjct: 164 DDVIRRTVYVSDIDQQVTEENLAGVFINCGQVVDCRVCGDPNS--VLRFAFIEFTN 217
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 29.9 bits (64), Expect = 2.5
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +1
Query: 409 LGGLPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSF 543
+G L TE+DL FGRYG + + + S GF F+ +
Sbjct: 22 VGSLTPETTESDLTELFGRYGDIDRITVY------SSRGFAFIYY 60
Score = 27.9 bits (59), Expect = 10.0
Identities = 10/27 (37%), Positives = 20/27 (74%)
Frame = +3
Query: 132 LFVGGLSWETSQENLQRYFSRYGEVID 212
L+VGG+ S+++L+ FS++G++ D
Sbjct: 252 LWVGGIGPNVSKDDLEEEFSKFGKIED 278
>At5g64430.1 68418.m08093 octicosapeptide/Phox/Bem1p (PB1)
domain-containing protein contains Pfam profile PF00564:
PB1 domain
Length = 513
Score = 29.1 bits (62), Expect = 4.3
Identities = 13/29 (44%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Frame = -3
Query: 742 PPPAPXXXRPPXPRXXG--PPXQXXGXPD 662
PPP P PP P+ PP Q G PD
Sbjct: 419 PPPQPFTSGPPPPQYTAVPPPRQVVGLPD 447
>At5g54650.2 68418.m06805 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 900
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/31 (38%), Positives = 13/31 (41%)
Frame = -3
Query: 781 PXXXVXAGXXGXXPPPAPXXXRPPXPRXXGP 689
P +G PPP P RPP P GP
Sbjct: 391 PAPPPGSGGPKPPPPPGPKGPRPPPPMSLGP 421
>At5g54650.1 68418.m06804 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 900
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/31 (38%), Positives = 13/31 (41%)
Frame = -3
Query: 781 PXXXVXAGXXGXXPPPAPXXXRPPXPRXXGP 689
P +G PPP P RPP P GP
Sbjct: 391 PAPPPGSGGPKPPPPPGPKGPRPPPPMSLGP 421
>At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
gb:D86122
Length = 785
Score = 29.1 bits (62), Expect = 4.3
Identities = 19/63 (30%), Positives = 27/63 (42%)
Frame = +3
Query: 99 NPDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD 278
NP D +G L V L+ S +L+ F YGE+ + N + F V AD
Sbjct: 213 NPSEKDVNQGTLVVFNLAPSVSNRDLENIFGVYGEIKEIRETPNKRHHKFVEFFDVRSAD 272
Query: 279 PSL 287
+L
Sbjct: 273 AAL 275
>At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family
protein Common family members: At4g18570, At4g04980,
At5g61090 [Arabidopsis thaliana]; identical to cDNA
CHUP1 for actin binding protein GI:28071264
Length = 1004
Score = 29.1 bits (62), Expect = 4.3
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -3
Query: 751 GXXPPPAPXXXRPPXPRXXGPP 686
G PPP P PP P GPP
Sbjct: 678 GPPPPPPPPGGGPPPPPGGGPP 699
>At5g19030.3 68418.m02263 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 130
Score = 28.7 bits (61), Expect = 5.7
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +3
Query: 132 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVT 269
LFV G S S+ L++ FS +G+V + S++ R R VT
Sbjct: 60 LFVKGFSDSVSEGRLKKVFSEFGQVTNEHYFSGSKNHRKRKDSAVT 105
>At1g72800.1 68414.m08416 nuM1-related contains similarity with nuM1
GI:1279563 from [Medicago sativa]
Length = 335
Score = 28.7 bits (61), Expect = 5.7
Identities = 16/65 (24%), Positives = 30/65 (46%)
Frame = +3
Query: 135 FVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQNGP 314
F L + + L +YFS +GE+ V + +G S G+ ++ + + L+ G
Sbjct: 241 FDASLPVDDIKSALSKYFSSFGEITRVFVPPSHGTGGSLGYAYIDLKEGA--EKALELGR 298
Query: 315 HQLDG 329
H + G
Sbjct: 299 HDVGG 303
>At5g60170.1 68418.m07543 RNA recognition motif (RRM)-containing
protein low similarity to transcriptional repressor
Not4-Np [Homo sapiens] GI:6856207; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif)
Length = 944
Score = 28.3 bits (60), Expect = 7.5
Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 3/27 (11%)
Frame = +1
Query: 415 GLPSNVTETDLXV---FFGRYGKVMEV 486
GLP N+ + DL +FG+YGKV++V
Sbjct: 74 GLPLNLADEDLLQHKEYFGQYGKVLKV 100
>At4g10610.1 68417.m01735 RNA-binding protein, putative
Length = 336
Score = 28.3 bits (60), Expect = 7.5
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = +3
Query: 132 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD 278
++V + + ++E L F +G+V+DC + + S F F+ F D
Sbjct: 152 VYVSDIDQQVTEEQLAGLFIGFGQVVDCRICGDPNS--VLRFAFIEFTD 198
>At3g45630.1 68416.m04928 RNA recognition motif (RRM)-containing
protein similar to SP|P34909 General negative regulator
of transcription subunit 4 {Saccharomyces cerevisiae};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 989
Score = 28.3 bits (60), Expect = 7.5
Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 3/27 (11%)
Frame = +1
Query: 415 GLPSNVTETDLXV---FFGRYGKVMEV 486
GLP N+ + DL +FG+YGKV++V
Sbjct: 115 GLPLNLADEDLLQRKEYFGQYGKVLKV 141
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 28.3 bits (60), Expect = 7.5
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +3
Query: 132 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD 278
++VG ++T +L+R FS++G V V MK+ G+ FV F D
Sbjct: 4 VYVGNFDYDTRHSDLERLFSKFGRV-KRVDMKS-------GYAFVYFED 44
>At1g05890.1 68414.m00617 zinc finger protein-related contains low
similarity to zinc finger proteins and Pfam PF01485: IBR
domain
Length = 552
Score = 28.3 bits (60), Expect = 7.5
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
Frame = +3
Query: 156 ETSQENLQRYFSRYGEVIDCVVMKNSESG--RSRGFGFVTFADPSLVNLV--LQNGPHQL 323
E+ E L + + EV + + E R++ G + NLV L+NG +
Sbjct: 453 ESGLERLHKCVEKDIEVFELAEGPSEEFNHFRTKLTGLTSITKTFFENLVKALENGLADV 512
Query: 324 DGRTIDPKPCNPRTLQKPKRGG 389
D + KP N + K K GG
Sbjct: 513 DSQAASSKPANSKPSSKTKGGG 534
>At5g55750.1 68418.m06949 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 175
Score = 27.9 bits (59), Expect = 10.0
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = -3
Query: 751 GXXPPPAPXXXRPPXPRXXGPP 686
G PPP+P PP P PP
Sbjct: 63 GNPPPPSPQYSPPPPPSQSSPP 84
>At5g20870.1 68418.m02478 glycosyl hydrolase family 17 protein
similar to elicitor inducible chitinase Nt-SubE76
GI:11071974 [Nicotiana tabacum]
Length = 501
Score = 27.9 bits (59), Expect = 10.0
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +3
Query: 165 QENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNL 296
Q+N+ +Y SRYG I V + N ++ FV P+L N+
Sbjct: 103 QQNVSQYISRYGTDIRYVAVGNEPFLKTYNNRFVRSTYPALQNV 146
>At5g13620.1 68418.m01578 expressed protein ; expression supported
by MPSS
Length = 301
Score = 27.9 bits (59), Expect = 10.0
Identities = 11/67 (16%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +3
Query: 114 DDEKGKLFVGGLSWETSQENLQRYFSR-YGEVIDCVVMKNSESGRSRGFGFVTFADPSLV 290
+D++ + S+ + YF+R +GE+I+ ++M E + + +++
Sbjct: 199 EDDRTVFLTFSRGYPLSEAEVHAYFTRRFGEIIEAIIMPGGEGNEQALYAKMVLHSAAMI 258
Query: 291 NLVLQNG 311
++ +G
Sbjct: 259 PEIVSDG 265
>At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 173
Score = 27.9 bits (59), Expect = 10.0
Identities = 15/71 (21%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Frame = +3
Query: 132 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQ-- 305
+++G + S L + G VID + ++ E+ + +GF F + + + ++
Sbjct: 9 VYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYETEEIADYAVKLF 68
Query: 306 NGPHQLDGRTI 338
+G L RT+
Sbjct: 69 SGLVSLYNRTL 79
>At2g14870.1 68415.m01690 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q10572 Sex determination
protein fox-1 (Feminizing locus on X protein 1)
{Caenorhabditis elegans}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 27.9 bits (59), Expect = 10.0
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +1
Query: 418 LPSNVTETDLXVFFGRYGKVMEVVIMYDQXKKKSXGFGFLSFED 549
LP ++T D FGRY + +V I +K + G F+ +ED
Sbjct: 27 LPFSITSEDTYDLFGRYSTIRQVRI---GCEKGTKGTAFVVYED 67
>At1g32790.1 68414.m04042 RNA-binding protein, putative similar to
RNA-binding protein GB:CAB40027 GI:4539439 from
[Arabidopsis thaliana]
Length = 358
Score = 27.9 bits (59), Expect = 10.0
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +3
Query: 111 DDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD 278
+D + ++V L + ++E L F G+V+DC + + S F F+ F D
Sbjct: 168 EDVIRRTVYVSDLDQQVTEEQLAGLFVSCGQVVDCRICGDPNS--VLRFAFIEFTD 221
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 27.9 bits (59), Expect = 10.0
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +3
Query: 132 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADP 281
++VG L + + ++ F +YG ++D + +K R G+ FV F DP
Sbjct: 9 IYVGNLPGDIRKCEVEDLFYKYGPIVD-IDLKIPP--RPPGYAFVEFEDP 55
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,803,748
Number of Sequences: 28952
Number of extensions: 354906
Number of successful extensions: 1816
Number of sequences better than 10.0: 205
Number of HSP's better than 10.0 without gapping: 1104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1727
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2178500352
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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