Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_F22
         (849 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   5.3  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     21   9.3  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +3

Query: 15  EADVIGIHKPGKPTNETSSYRPVSL 89
           ++DV+ + KPG P +      P+ L
Sbjct: 220 DSDVVNLSKPGTPPSGEPGNGPLDL 244



 Score = 22.2 bits (45), Expect = 5.3
 Identities = 14/48 (29%), Positives = 20/48 (41%)
 Frame = -3

Query: 496  NSNGESAEPCGTPAVS*RGRERVPSTRYRNERFDKKSRMMSTSLSGTP 353
            +SNG   E    P+VS     R P+  +        +   S+  SGTP
Sbjct: 899  HSNGAKEEDEDKPSVSPLTSPRQPAETHAGSPCRNSASPASSDRSGTP 946


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 322 CQTLSNAFAMSKKRAPVGICL 260
           C T S+      KRAPVG+ L
Sbjct: 31  CTTASSWPGRPPKRAPVGLSL 51


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,793
Number of Sequences: 336
Number of extensions: 4192
Number of successful extensions: 7
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23451794
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)