Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_F22
(849 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,177... 57 2e-08
06_02_0297 - 13891954-13892556,13893019-13893855,13894179-138943... 52 6e-07
07_03_1291 + 25545749-25546262,25546989-25547669,25547693-255477... 42 8e-04
02_02_0604 - 12064451-12065683,12065729-12065827,12065858-120659... 33 0.29
07_03_0762 + 21324550-21325414,21325606-21325746,21325993-213261... 29 3.5
04_03_0582 + 17528335-17529790,17529913-17531651,17531814-175320... 29 4.7
08_01_1042 + 10560340-10560627,10561001-10561415,10561571-10561614 29 6.2
01_01_1010 - 7996921-7997673,7999212-7999399,7999688-7999784,800... 29 6.2
02_01_0035 - 220036-221419,222050-222801 28 8.2
>07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,
1778770-1778900,1779530-1779788,1779823-1780098,
1780100-1781352
Length = 1344
Score = 57.2 bits (132), Expect = 2e-08
Identities = 68/238 (28%), Positives = 99/238 (41%), Gaps = 14/238 (5%)
Frame = +3
Query: 18 ADVIGIHKPGKPTNETSSYRPVSLLSTIGKIYERLLRKRLWNFVTANKILIDEQFGFRSK 197
A ++ I KPGK N YRP+SL + KI ++L RL V I +D Q GF
Sbjct: 971 AYIVLIQKPGKE-NTVDGYRPISLQNCSVKILSKVLATRLQR-VFLRMIHLD-QTGFLKG 1027
Query: 198 HSCVQQVHRLTEHILIGLNRRKQIPTGALFFDIAKAFDKV*HNGLIYKLYNMGVPDRLVL 377
+ + TE LI R++ T + D KAFD V + L L G P+ +
Sbjct: 1028 RCISENLIYATE--LIQACYRRKCQTIIVKLDFTKAFDSVIWSSLFKILAVRGFPENWIS 1085
Query: 378 IIRDFLSNRSFRYRVEGTRSRPRQLTAGVPQGSALSPLLFSLYINDIPRSPETHLAL--- 548
I+ LS+ + G R G+ QG LS LF L + + R E + +
Sbjct: 1086 WIKGLLSSSKSAVLLNGVPGRWICCKKGLLQGDPLSSYLFILVADVLQRLLERNTEIRHA 1145
Query: 549 -----------FADDTAIYYSCRKMSLLHRRLQIAVATLGQWFRKWRIDINPTKSAXV 689
+ADDT I Y + +L + TL Q+ + + IN KS +
Sbjct: 1146 IYQDRPCTTIQYADDTLIIYRAEEADVLALK-----ETLLQFSKATGLQINFAKSTMI 1198
>06_02_0297 -
13891954-13892556,13893019-13893855,13894179-13894394,
13895455-13895874,13896198-13896506
Length = 794
Score = 52.0 bits (119), Expect = 6e-07
Identities = 46/156 (29%), Positives = 73/156 (46%), Gaps = 2/156 (1%)
Frame = +3
Query: 42 PGKPTNET-SSYRPVSLLSTIGKIYERLLRKRLWNFVTANKILIDEQFGFRSKHSCVQQV 218
P K + ET + +RP+SL+ KI +LL RL + K++ D +GF K +Q
Sbjct: 377 PKKTSLETVNDFRPISLMGISLKIVTKLLAGRLQGVIL--KLVSDNHYGF-IKGKTIQDC 433
Query: 219 HRLT-EHILIGLNRRKQIPTGALFFDIAKAFDKV*HNGLIYKLYNMGVPDRLVLIIRDFL 395
E+I +++I L D KAFD + H+ ++ + +MG P + + ++
Sbjct: 434 PAWPFEYIHQCQQSKREIVL--LKLDFEKAFDTIEHSAILSVMQHMGFPLKWIEWVQMVF 491
Query: 396 SNRSFRYRVEGTRSRPRQLTAGVPQGSALSPLLFSL 503
S S + G + GV QG LS LLF L
Sbjct: 492 STASSAVLLNGVPGNSFKCRRGVRQGVPLSLLLFVL 527
>07_03_1291 +
25545749-25546262,25546989-25547669,25547693-25547751,
25549152-25549242,25549330-25549743,25550191-25550243,
25550947-25551177,25551492-25551708,25551790-25551890,
25552446-25552532,25553536-25553676,25553839-25553961,
25554070-25554522,25554931-25555308,25555410-25556060,
25556264-25556368,25556482-25556707,25557204-25557241
Length = 1520
Score = 41.5 bits (93), Expect = 8e-04
Identities = 35/125 (28%), Positives = 52/125 (41%)
Frame = +3
Query: 174 EQFGFRSKHSCVQQVHRLTEHILIGLNRRKQIPTGALFFDIAKAFDKV*HNGLIYKLYNM 353
+Q GF K C+ + ++ + RK T + D AKAFD V L L
Sbjct: 5 DQTGFL-KGRCISENLIYATELIQACHARK-CQTLIIKLDFAKAFDSVNWQSLFQILSVK 62
Query: 354 GVPDRLVLIIRDFLSNRSFRYRVEGTRSRPRQLTAGVPQGSALSPLLFSLYINDIPRSPE 533
G PD + I++ L + G + G+ QG LSP LF L + + R E
Sbjct: 63 GFPDNWISWIKNLLQTSKSAVLLHGIPGKWITCKKGLRQGDPLSPYLFILVADVLQRLLE 122
Query: 534 THLAL 548
+L +
Sbjct: 123 RNLQI 127
>02_02_0604 -
12064451-12065683,12065729-12065827,12065858-12065955,
12066782-12066924,12067233-12067729
Length = 689
Score = 33.1 bits (72), Expect = 0.29
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 9/64 (14%)
Frame = +3
Query: 411 RYRVEGTRSRPRQLTAGVPQGSALSPLLFSL---------YINDIPRSPETHLALFADDT 563
R + GT S P + G+ QG LSPLLF L +N R+P +L+ADD
Sbjct: 216 RIDINGTLSDPFKPMRGLRQGDPLSPLLFVLKAMSAGLLDKVNQWSRAPNN--SLYADDA 273
Query: 564 AIYY 575
I++
Sbjct: 274 VIFF 277
>07_03_0762 +
21324550-21325414,21325606-21325746,21325993-21326177,
21326200-21326410,21326526-21326769,21326853-21327003,
21327089-21327439
Length = 715
Score = 29.5 bits (63), Expect = 3.5
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = -3
Query: 787 PKESDGTNGGGVXAXXTEWMXEV--MFGGRPLLK 692
PKE G GGG+ + EV F GRPLL+
Sbjct: 236 PKEFSGRTGGGMFGVWCNFRYEVFPFFSGRPLLQ 269
>04_03_0582 + 17528335-17529790,17529913-17531651,17531814-17532035,
17532062-17533525
Length = 1626
Score = 29.1 bits (62), Expect = 4.7
Identities = 29/126 (23%), Positives = 53/126 (42%), Gaps = 1/126 (0%)
Frame = +3
Query: 24 VIGIHKPGKPTNETSSYRPVSLLSTIGKIYERLLRKRLWNFVTANKILIDEQFGFRSKHS 203
++ I K +P + YRP+SL + + K+ + L RL + + ++ EQ F
Sbjct: 952 IVLIPKKDQPI-DLKDYRPISLCNVVYKVVSKCLVNRLRPIL--DDLVSKEQSAFIQGRM 1008
Query: 204 CVQQVHRLTEHI-LIGLNRRKQIPTGALFFDIAKAFDKV*HNGLIYKLYNMGVPDRLVLI 380
E I N++ A D++KA+D+V L L +G R +
Sbjct: 1009 ITDNALLAFECFHSIQKNKKANSAACAYKLDLSKAYDRVDWRFLELALNKLGFAHRWEKV 1068
Query: 381 IRDFLS 398
++ L+
Sbjct: 1069 AQNSLT 1074
>08_01_1042 + 10560340-10560627,10561001-10561415,10561571-10561614
Length = 248
Score = 28.7 bits (61), Expect = 6.2
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +3
Query: 426 GTRSRPRQLTAGVPQGSALSP 488
G RSRPR+ AG PQ +A SP
Sbjct: 156 GRRSRPRRCLAGRPQATAGSP 176
>01_01_1010 -
7996921-7997673,7999212-7999399,7999688-7999784,
8000420-8000767,8001130-8001231,8001432-8001501,
8001747-8001802,8001891-8002010
Length = 577
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +2
Query: 113 RTAP*ETPLEFCYREQNSHRRTVRIPLKTLVRTTSAPPHGAHSD 244
R+ P +T C+ + RRT R+PL+ + +A P H D
Sbjct: 156 RSYPCKTRFRGCFIGKQKSRRTARVPLERSEESRAAIPRRFHWD 199
>02_01_0035 - 220036-221419,222050-222801
Length = 711
Score = 28.3 bits (60), Expect = 8.2
Identities = 12/49 (24%), Positives = 20/49 (40%)
Frame = +2
Query: 626 HPGTVVPEVANRHQPHEKRXGALQKGSPSEHHFXHPLRXXRXNTSAVSP 772
HP + + HQ H+++ + +P HH HP + A P
Sbjct: 105 HPHLQLFHEQHHHQKHQQQPPPPARWAPQHHHHHHPHHHLGLDVEAAVP 153
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,611,644
Number of Sequences: 37544
Number of extensions: 503992
Number of successful extensions: 1286
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1284
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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