Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_F20
         (767 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0281 + 11560402-11560569,11561373-11561579,11562966-115631...    29   5.4  
08_02_1268 - 25751744-25752637                                         28   9.4  

>05_03_0281 +
           11560402-11560569,11561373-11561579,11562966-11563174,
           11563261-11563309,11563611-11563673,11563799-11565472
          Length = 789

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = -2

Query: 295 CRSNSFGDLPVFARWTRTHXNVSMSQMQ--GQVDY 197
           CRS+ +GD  ++   +R H +  + Q Q  GQ DY
Sbjct: 169 CRSSFYGDNELYTHMSREHYSCHICQRQHPGQYDY 203


>08_02_1268 - 25751744-25752637
          Length = 297

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +3

Query: 336 LAGVLGTLVEA*RGTAKRGCNHRRGTTLSAPVYLITAPSPGIKRLDIS 479
           LA   G   +A  GT ++ C+  R TT+    Y +    PG   LDIS
Sbjct: 36  LAIYWGRHADADEGTLRQACDTGRYTTVIITFYNVFGYHPGNYNLDIS 83


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,694,208
Number of Sequences: 37544
Number of extensions: 412998
Number of successful extensions: 1326
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1326
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)