Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_F20
(767 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_38490| Best HMM Match : Neur_chan_LBD (HMM E-Value=2e-24) 42 4e-04
SB_37177| Best HMM Match : Neur_chan_LBD (HMM E-Value=5.3) 41 0.001
SB_17986| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_38489| Best HMM Match : Neur_chan_LBD (HMM E-Value=7.1e-24) 38 0.007
SB_51056| Best HMM Match : Neur_chan_LBD (HMM E-Value=4.3e-24) 37 0.021
SB_43224| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.002) 37 0.021
SB_31671| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 37 0.021
SB_52663| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.50006e-41) 36 0.027
SB_49329| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 36 0.036
SB_453| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.1e-08) 36 0.048
SB_73| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.34
SB_37942| Best HMM Match : Neur_chan_LBD (HMM E-Value=7.7e-05) 32 0.44
SB_37778| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.77
SB_59159| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.77
SB_31676| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 31 0.77
SB_4972| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.92) 31 1.4
SB_50983| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 30 1.8
SB_14827| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.8) 30 1.8
SB_24418| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_5179| Best HMM Match : Neur_chan_memb (HMM E-Value=3.5e-08) 30 2.4
SB_59781| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 29 3.1
SB_46592| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_59669| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_25727| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_27527| Best HMM Match : MFAP1_C (HMM E-Value=0.57) 28 9.5
SB_26157| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
>SB_38490| Best HMM Match : Neur_chan_LBD (HMM E-Value=2e-24)
Length = 478
Score = 42.3 bits (95), Expect = 4e-04
Identities = 18/37 (48%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Frame = +1
Query: 280 MNWIDKRLSWNAGEWG-CSTWLVSSERLWRPDVVLLN 387
+ W++ LSWNA E+G +T V +RLW PD+VL N
Sbjct: 77 VKWVNPSLSWNASEFGGVNTLHVEPDRLWVPDIVLYN 113
>SB_37177| Best HMM Match : Neur_chan_LBD (HMM E-Value=5.3)
Length = 79
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Frame = +1
Query: 253 TVRIQADLQMNWIDKRLSWNAGEWGCSTWLVSSER--LWRPDVVLLN 387
T+R+Q ++ W D +L W+ ++G +V ER +W PDVVLLN
Sbjct: 32 TIRLQQIYELAWWDHKLQWDQSKYGGIKEVVLPERGVIWVPDVVLLN 78
>SB_17986| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 724
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Frame = +1
Query: 253 TVRIQADLQMNWIDKRLSWNAGEWGCSTWLVSSER--LWRPDVVLLN 387
T+R+Q ++ W D +L W+ ++G +V ER +W PDVVLLN
Sbjct: 32 TIRLQQIYELAWWDHKLQWDQSKYGGIKEVVLPERGVIWVPDVVLLN 78
>SB_38489| Best HMM Match : Neur_chan_LBD (HMM E-Value=7.1e-24)
Length = 445
Score = 38.3 bits (85), Expect = 0.007
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +1
Query: 274 LQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLN 387
+ + W + LSWNA E+ G S VS +R W PD++L N
Sbjct: 21 IAVRWTNPDLSWNASEYGGVSQIYVSPKRPWTPDILLYN 59
>SB_51056| Best HMM Match : Neur_chan_LBD (HMM E-Value=4.3e-24)
Length = 373
Score = 36.7 bits (81), Expect = 0.021
Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 1/87 (1%)
Frame = +1
Query: 130 TVPHDRLAPRNVRSGLPPRLQNRSQPDPAFETC*HFXESESTVRIQADLQMNWIDKRLSW 309
T D L + G+P RL D A + T+ + ++ W D RL W
Sbjct: 23 TYNKDVLPKETLDKGVPVRL------DLALNQIIDVNKRAQTMTVVIWVRQYWRDPRLRW 76
Query: 310 NAGEW-GCSTWLVSSERLWRPDVVLLN 387
N + G ++ + RLW PD+ L N
Sbjct: 77 NVSAYDGVDNIVIKASRLWLPDITLYN 103
>SB_43224| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.002)
Length = 123
Score = 36.7 bits (81), Expect = 0.021
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +1
Query: 274 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLN 387
++MNW + L WNA E+G L +S +W PD+VL N
Sbjct: 84 VRMNWNNHLLRWNASEYGGIDKLNISPTLMWLPDIVLHN 122
>SB_31671| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 541
Score = 36.7 bits (81), Expect = 0.021
Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +1
Query: 241 ESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLN 387
E E + ++ W D L WN ++ G + +++ +++W+PDV+L N
Sbjct: 491 EREQILTTNVWIRQYWADHFLQWNPDDFSGIKSIIIAPDKVWKPDVLLFN 540
Score = 35.9 bits (79), Expect = 0.036
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +1
Query: 241 ESESTVRIQADLQMNWIDKRLSWNAGEWG-CSTWLVSSERLWRPDVVLLN 387
E + + I ++ W D L WN ++G + ++ +R+W+PDV+L N
Sbjct: 73 ERDQILTINVWIRQYWKDHLLKWNPDDFGGIKSINIAPDRVWKPDVLLYN 122
>SB_52663| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.50006e-41)
Length = 342
Score = 36.3 bits (80), Expect = 0.027
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +1
Query: 241 ESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLN 387
E ++ L+ W D RL+WN E+ G + S+ +W PD+ +LN
Sbjct: 32 EKNEVIQTFLILEQMWNDTRLAWNETEYGGIKQMTLRSKLIWTPDISVLN 81
>SB_49329| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 716
Score = 35.9 bits (79), Expect = 0.036
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +1
Query: 241 ESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLN 387
E +++ ++ W + LSWNA E+ G S + ++LW+PD+ L N
Sbjct: 104 EKYELLKLSLYVRQIWKNPLLSWNASEYGGISQVNLEPDQLWKPDIYLYN 153
>SB_453| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.1e-08)
Length = 362
Score = 35.5 bits (78), Expect = 0.048
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +1
Query: 274 LQMNWIDKRLSWNAGEWG-CSTWLVSSERLWRPDVVLLN 387
+ + W D RL WN ++G +++ S +LW PD+ L N
Sbjct: 276 IDLYWTDFRLRWNHTKYGGIKSFVTPSRQLWLPDITLYN 314
>SB_73| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 930
Score = 32.7 bits (71), Expect = 0.34
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 274 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLN 387
L+M W D L WN ++G T + + + +W P V++ N
Sbjct: 547 LRMGWKDAFLQWNPADYGGVTQINLEASDIWTPPVIIYN 585
>SB_37942| Best HMM Match : Neur_chan_LBD (HMM E-Value=7.7e-05)
Length = 191
Score = 32.3 bits (70), Expect = 0.44
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +1
Query: 253 TVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLN 387
+VR+ +++ W + L WN ++ G T V+ +W PD+VL N
Sbjct: 87 SVRLNKLVEVKWENPFLVWNESDYGGVHTLHVTFNDVWVPDIVLYN 132
>SB_37778| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 312
Score = 31.5 bits (68), Expect = 0.77
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +1
Query: 256 VRIQADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLN 387
V + + + W + L+W+ +G T + V R+WRPD++L N
Sbjct: 69 VSLHQIIDLKWNNPLLTWDPTHFGNLTSINVDPLRVWRPDLILYN 113
>SB_59159| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 686
Score = 31.5 bits (68), Expect = 0.77
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +1
Query: 253 TVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLN 387
TV L W D L+WN ++ G + V +W PD+VL N
Sbjct: 208 TVACFLPLLQKWYDPWLTWNESDFGGMKSIKVDPSCVWVPDIVLYN 253
>SB_31676| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 422
Score = 31.5 bits (68), Expect = 0.77
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +1
Query: 274 LQMNWIDKRLSWNAGEWG-CSTWLVSSERLWRPDVVLLN 387
+++ W D L+WN ++G + V +W+PD++L N
Sbjct: 26 IRLYWKDHLLNWNPEDFGGVKSINVEPNNVWKPDILLYN 64
>SB_4972| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.92)
Length = 88
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +1
Query: 286 WIDKRLSWNAGEWG-CSTWLVSSERLWRPDVVL 381
W + L+WN E+G T VS +W PD+VL
Sbjct: 53 WYNPLLTWNVTEYGGLKTINVSPTIIWLPDIVL 85
>SB_50983| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 434
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +1
Query: 277 QMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLN 387
+ W D L W+ + G T + V LW+PD+VL N
Sbjct: 88 RQTWTDAWLKWDPAKHGGITAINVDPSFLWKPDMVLYN 125
>SB_14827| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.8)
Length = 156
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = +1
Query: 286 WIDKRLSWNAGEWG-CSTWLVSSERLWRPDVVLLN 387
W ++ L+W+ E+G ST V+ +++W PD+ L N
Sbjct: 2 WRNEYLTWDPKEFGGISTINVNVDKVWVPDIYLYN 36
>SB_24418| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 705
Score = 30.3 bits (65), Expect = 1.8
Identities = 11/37 (29%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +1
Query: 274 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVL 381
+ + W++ L+W+ +G T + V+ +W+PD+VL
Sbjct: 64 INLRWVNPFLTWDPKMYGGLTSINVNPNMIWKPDIVL 100
>SB_5179| Best HMM Match : Neur_chan_memb (HMM E-Value=3.5e-08)
Length = 428
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Frame = +1
Query: 217 FETC*HFXESESTVRIQADLQMNWIDKRLSWNAG-EWGCSTWLVSSERLWRPDVVLLN 387
+ +C E T ++ + W D L WN G V +W PD+ L+N
Sbjct: 11 YSSCQDSKAQELTTNLR--IYQEWKDPNLKWNKSIAQGVEEIFVDPSDIWTPDIALMN 66
>SB_59781| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 275
Score = 29.5 bits (63), Expect = 3.1
Identities = 11/39 (28%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +1
Query: 274 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLN 387
+ + W + ++WN E+G + + LW+PD+ L N
Sbjct: 44 MDVKWENPLVAWNKSEYGGIVQVNLDPSTLWKPDIYLYN 82
>SB_46592| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 648
Score = 29.5 bits (63), Expect = 3.1
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +1
Query: 286 WIDKRLSWNAGEWGCSTWLVSSERLWRPDVVLLN 387
W D L W+ ++ S + +W PDV L+N
Sbjct: 404 WKDPSLQWDKAKYNLHKTRFSPKEIWVPDVSLIN 437
>SB_59669| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3511
Score = 28.7 bits (61), Expect = 5.5
Identities = 14/61 (22%), Positives = 26/61 (42%)
Frame = -2
Query: 343 PAKCCSPTPLRSNSVVCRSNSFGDLPVFARWTRTHXNVSMSQMQGQVDYDFGVGGGVPIV 164
P C P ++ + F + V A+ T +++ Q+ Q YDFG+ ++
Sbjct: 1270 PISMCVPDSGMIAEIILFAEGFNNTKVLAKKVHTLYTLAVQQLSKQDHYDFGLRALTSVL 1329
Query: 163 R 161
R
Sbjct: 1330 R 1330
>SB_25727| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1758
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/44 (25%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +1
Query: 259 RIQADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLN 387
+++ + + W + L+W+ ++G + V+ E +W PD+V+ N
Sbjct: 1463 KLKQIVDLQWENPILTWDPRDYGGVQEINVAPEEVWVPDIVIYN 1506
>SB_27527| Best HMM Match : MFAP1_C (HMM E-Value=0.57)
Length = 818
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = -2
Query: 385 LAVPRQASTSVPRTPAKCCSPTPLRSNSV 299
L++P A++S P TPA SPTP SNS+
Sbjct: 680 LSLPCTAASS-PSTPASSPSPTPPLSNSL 707
>SB_26157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1097
Score = 27.9 bits (59), Expect = 9.5
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 7/67 (10%)
Frame = -3
Query: 396 CSRV*QYHVRPPQA-FRGHQPSAAAPLPCVPTQ--SFVDPIH----LEICLYSHGGLGLT 238
C R +Y +R P + + P +P P++ S +DP+ LE CL ++ GLG +
Sbjct: 110 CMRAAEYGIRRPDSVLAAYAPFNVQYIPS-PSRLLSLMDPLLPTGILEACLKAYAGLGKS 168
Query: 237 EMLACLK 217
C+K
Sbjct: 169 PFEECIK 175
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,112,698
Number of Sequences: 59808
Number of extensions: 399696
Number of successful extensions: 1148
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1135
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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