Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_F20
         (767 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g19895.1 68416.m02519 expressed protein                             30   1.5  
At5g05130.1 68418.m00544 SNF2 domain-containing protein / helica...    29   4.5  
At3g24540.1 68416.m03082 protein kinase family protein contains ...    28   7.9  

>At3g19895.1 68416.m02519 expressed protein
          Length = 554

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
 Frame = -3

Query: 342 QPSAAAPLPCVPTQSFVDPIHLEICLYSHGGLGLTEMLACLKCRVRLTTILESGG--ESR 169
           +PS  + L    + +F++   +  C +S GGL L  +L   +C +   T +ESG    + 
Sbjct: 367 EPSLRSVLSDPISGAFLEDAMVVSCGHSFGGLMLRRVLEMSRCTL-CNTEIESGSLVPNH 425

Query: 168 SYVARSESIMRDSDVAFSHSAAL 100
           +  A + +I +  D    H+AA+
Sbjct: 426 ALRAAASAIKQQDDKRLFHNAAM 448


>At5g05130.1 68418.m00544 SNF2 domain-containing protein / helicase
           domain-containing protein / RING finger
           domain-containing protein similar to transcription
           factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
           contains Pfam profiles PF00271: Helicase conserved
           C-terminal domain, PF00176: SNF2 family N-terminal
           domain, PF00097: Zinc finger, C3HC4 type (RING finger)
          Length = 862

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/53 (24%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = -3

Query: 222 LKCRVRLTTILESGGESRSYVARSESIM-RDSDVAFSHSAALVIAQVRRNGNR 67
           + C++ +   LE+    +S ++R   ++  +SD +F  S A+V+ +   NG++
Sbjct: 126 IPCQIHVFAKLEASSTVKSTISRGGLVLISESDTSFGLSEAVVVKEQMGNGDK 178


>At3g24540.1 68416.m03082 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 509

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 154 PRNVRSGLPPRLQNRSQPDPA 216
           PR+  +  PPRL NR+ P PA
Sbjct: 75  PRSPSTSTPPRLGNRNPPPPA 95


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,931,042
Number of Sequences: 28952
Number of extensions: 281379
Number of successful extensions: 798
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)