Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_F14
         (864 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    40   5e-04
SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    29   0.85 
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    29   1.1  
SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein Rga5|Sch...    28   1.5  
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    27   2.6  
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1...    27   3.4  
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom...    27   4.5  
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    27   4.5  
SPBC30D10.13c |pdb1||pyruvate dehydrogenase e1 component beta su...    26   6.0  
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc...    26   7.9  
SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyce...    26   7.9  

>SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 39.9 bits (89), Expect = 5e-04
 Identities = 44/152 (28%), Positives = 68/152 (44%)
 Frame = +3

Query: 3   LXTRGRSWLRSSXPFASDPKKQSRYEQFLKGVVVEADEGDRLREWERNRELIEFEQAAKL 182
           + T   +  R   P+  + ++   YE FLK  ++       LR+ + +R L+EF Q A L
Sbjct: 360 IETAKNAMSRKDNPY--NDERAGIYEIFLKAHLMNMPR--LLRDID-SRHLLEFTQTASL 414

Query: 183 YKPLSGVMEDRFTHASEPDDALNPLTAVARSSTGYGLATSEQIEAAKGGLYGAVTRVEIQ 362
           Y+P+S  +  RF  + E         +  + S      T + I            R  + 
Sbjct: 415 YRPMSKNLSMRFVSSFE--------ASTKKESINSHSETDDSILRR--------PRTVVT 458

Query: 363 WRPEALVCKRFNVPQPGGANTEEKHQERPKIS 458
           + PE L+CKRFNV  P G   +EK Q+R  IS
Sbjct: 459 FIPERLLCKRFNVALPYG---QEK-QKRKNIS 486


>SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 526

 Score = 29.1 bits (62), Expect = 0.85
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -2

Query: 251 VQSIVRFAGVRESILHNSAQR 189
           +QSIVRFAG+ E+++ N   R
Sbjct: 178 LQSIVRFAGISEALMENGGMR 198


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
 Frame = +3

Query: 387 KRFNVPQPGGANTEEKHQERPKISYSVFSYMESSVHDRDSFAKE-QVSFSGSKSLNREPV 563
           KR + P+P   + +++ + + K   S  S  ESS  + +S + E + S S S+S + E  
Sbjct: 59  KRASSPEPSKKSVKKQKKSKKKEESSSESESESSSSESESSSSESESSSSESESSSSESS 118

Query: 564 KIDTRPVSVTSTSNKTE 614
             ++    +  T  K E
Sbjct: 119 SSESEEEVIVKTEEKKE 135


>SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein
           Rga5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = -3

Query: 349 LVTAP*RPPLAASICSEVAKP*PVELLATAVNGFRASSGSL 227
           LV AP  P  ++++ ++ A P P+   +  +N F   +GS+
Sbjct: 256 LVAAPTSPNTSSTLITQSAAPTPIASTSIRINSFNPRNGSI 296


>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 949

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 23/76 (30%), Positives = 32/76 (42%)
 Frame = +3

Query: 429 EKHQERPKISYSVFSYMESSVHDRDSFAKEQVSFSGSKSLNREPVKIDTRPVSVTSTSNK 608
           E+    P IS   +   ESS H   SF+    S    KSL  +PV    RPV   + +  
Sbjct: 2   ERISSAPSISLG-YPPTESSAHLAPSFSDSATSTLSFKSLLEDPVN-PIRPVYTPTRTEI 59

Query: 609 TELVGAPKRMTVAELF 656
           T +  +P  +T    F
Sbjct: 60  TPVTLSPIPITPVREF 75


>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
           Epe1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 948

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 739 LYKSILSNLFIVSVTWTPSFLFCSDSFKN 653
           L + I   LF  ++ WTPSF     +F+N
Sbjct: 654 LEQLIFQALFSFAINWTPSFFLNHSNFEN 682


>SPAC926.04c |hsp90|swo1|heat shock protein
           Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 704

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +3

Query: 54  DPKKQSRYEQFLKGVVVEADEGDRLRE-WERNRELIEFEQAAKLYKPLSGVMED 212
           + +K+ +  + +K    E +E ++ +  W RN   +  E+ A  YK L+   ED
Sbjct: 244 ESEKKEKKTKKVKETTTETEELNKTKPIWTRNPSEVTKEEYASFYKSLTNDWED 297


>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
            Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 19/73 (26%), Positives = 34/73 (46%)
 Frame = +3

Query: 504  SFAKEQVSFSGSKSLNREPVKIDTRPVSVTSTSNKTELVGAPKRMTVAELFLKESEQNKN 683
            S+  + V  S +K L R   ++      +   SN+  +   PK + V + F+ E EQN  
Sbjct: 1142 SYFTDSVLLSMAKKLPRNVKELK----EIHGVSNEKAVNLGPKFLQVIQKFIDEKEQNL- 1196

Query: 684  EGVQVTXTINKFD 722
            EG ++  ++   D
Sbjct: 1197 EGTELDPSLQSLD 1209


>SPBC30D10.13c |pdb1||pyruvate dehydrogenase e1 component beta
           subunit Pdb1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 366

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -3

Query: 607 LFDVDVTETGLVSILTGSRFSDFDPLNETCSF 512
           + D  +TE G   + TG+ F+   P+ E  +F
Sbjct: 87  VIDTPITEMGFTGLATGAAFAGLRPICEFMTF 118


>SPAC6B12.05c |||chromatin remodeling complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 295

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +3

Query: 513 KEQVSFSGSKSLNREPVKIDTRPVSVTSTSNKTELVG 623
           +E  SFS  K L   P+   T PVS+  T  +  + G
Sbjct: 135 EEDGSFSDLKDLYSNPMPAQTTPVSMRMTKRQRAIQG 171


>SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 292

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = -1

Query: 471 KRRSKKSSVALDVFLLYSRHRVGER*ISCTRALRAAIVFPLWSQRRRD 328
           K+   K  ++L+ F+   RHR+G      T        F  WS  RRD
Sbjct: 182 KKDDTKEEISLEAFIEIERHRLGPNLTPVTEE-----NFKKWSDGRRD 224


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,146,061
Number of Sequences: 5004
Number of extensions: 62424
Number of successful extensions: 207
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)