Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_F14
         (864 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0097 - 16607936-16608712,16610114-16610320,16611220-166113...    49   4e-06
04_04_1177 - 31497288-31497647,31497782-31497932,31498017-314982...    29   3.6  
08_02_0874 - 22102158-22102333,22102354-22102498                       29   4.8  
05_06_0204 + 26354319-26356967                                         29   4.8  
01_01_0891 + 7023383-7023700,7024627-7024705,7024888-7024951,702...    29   4.8  
07_03_0288 + 16285485-16285721,16285811-16286184,16286499-162868...    28   8.4  

>06_03_0097 - 16607936-16608712,16610114-16610320,16611220-16611336,
            16611409-16611690,16611811-16612294,16612791-16612929,
            16613138-16613243,16613396-16613562,16613632-16613707,
            16614173-16614321,16614813-16614874,16615232-16615335,
            16616856-16616950,16617046-16617136,16617785-16617922
          Length = 997

 Score = 49.2 bits (112), Expect = 4e-06
 Identities = 46/176 (26%), Positives = 80/176 (45%), Gaps = 10/176 (5%)
 Frame = +3

Query: 42   PFASDPKKQSRYEQFLK----GVVVEAD--EGDRLREWERNRELIEFEQAAKLYKPLSGV 203
            PF +DP KQ+R+EQFLK    G +  A+      + + +R RE ++FE AA+       +
Sbjct: 546  PFRNDPAKQARFEQFLKDKYQGGLRPANLIPTSTMSDVDRARERLDFEAAAET------I 599

Query: 204  MEDRFTHASEPDDALNPLTAVARSSTGYGLATSEQIEAA-KGGLYGAVTRVEIQWRPEAL 380
             + +   A +P   L  L+ +          +   I A  +  +Y    R E +WRP  +
Sbjct: 600  EKGKEKKAMDPLSLLG-LSGINEQRFVSSTESERSIPARDEKSIY--PRREEFEWRPSPI 656

Query: 381  VCKRFNVPQPGGANTEEKHQERPKISYSVF---SYMESSVHDRDSFAKEQVSFSGS 539
            +CKRF++  P         + R K+   +F   S   ++  +  S A +  S +G+
Sbjct: 657  LCKRFDIVDPFMGKPFHVQRPRSKMDSLIFMSESTTRTNEVESSSIAPQHTSVAGA 712


>04_04_1177 -
           31497288-31497647,31497782-31497932,31498017-31498254,
           31498373-31498583,31498674-31498780,31498877-31498905,
           31499764-31499930
          Length = 420

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 577 LVSILTGSRFSDFDPLNETCSFAKLSLSCTEDSM 476
           L  I+     +D D ++E C F K+ L CT+D+M
Sbjct: 311 LAEIIDADLGNDLD-VDEACRFLKIGLLCTQDAM 343


>08_02_0874 - 22102158-22102333,22102354-22102498
          Length = 106

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +3

Query: 531 SGSKSLNREPVKIDTRPVSVTSTSNKTELVG-APKRMTV 644
           SGS S  +  V +D  P  +TS   K ELVG  P R+ V
Sbjct: 2   SGSTSPKKRHVHLDALPSCMTSVVAKGELVGEVPNRLAV 40


>05_06_0204 + 26354319-26356967
          Length = 882

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = +2

Query: 338 RCDQSGNTMAARSARVQEI*RSPTRWREYRRKTSRATEDFLL 463
           RC++SG+ +  +SA  QEI   P +     ++ SR ++ F+L
Sbjct: 806 RCNESGHLLNYKSAEYQEIGGEPFKLFALLQEDSRRSDKFVL 847


>01_01_0891 +
           7023383-7023700,7024627-7024705,7024888-7024951,
           7025324-7025401,7025513-7025708,7025895-7025963,
           7026115-7026254,7026425-7026547,7027390-7027582,
           7028872-7029034,7029433-7029476,7029683-7029724
          Length = 502

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 90  KGVVVEADEGDRLREWERNRELIEFEQAAKLY 185
           +G  V A E DR+R W  +R    F  A ++Y
Sbjct: 420 EGRAVYAAEADRIRNWAESRARFSFTDAMEMY 451


>07_03_0288 +
           16285485-16285721,16285811-16286184,16286499-16286892,
           16286917-16287806,16291189-16291446,16291518-16291628,
           16291697-16291775,16291880-16291972,16292095-16292280
          Length = 873

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 18/67 (26%), Positives = 28/67 (41%)
 Frame = +1

Query: 346 PEWKYNGGPKRSCARDLTFPNPVARIQKKNIKSDRRFLTPSFRTWSLQYTTETASRKNKS 525
           P  K  GG       D   P PV    +++ + D+    P     ++  T  TAS K K 
Sbjct: 57  PAKKRKGGSDNEVDSDYVPPEPVLNAPRRSKRKDQAATKPEAEATAVVRT--TASSKPKK 114

Query: 526 RSVDQNR 546
           R V++ +
Sbjct: 115 RRVERGK 121


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,210,247
Number of Sequences: 37544
Number of extensions: 449943
Number of successful extensions: 1415
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1415
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)