Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_F14
         (864 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1181| Best HMM Match : DUF1604 (HMM E-Value=0)                     109   2e-24
SB_58305| Best HMM Match : Band_41 (HMM E-Value=4.8e-08)               29   4.9  
SB_34296| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_20559| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  
SB_6397| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.5  
SB_58718| Best HMM Match : Pec_lyase_N (HMM E-Value=7.8)               28   8.5  
SB_57637| Best HMM Match : SRP40_C (HMM E-Value=2.3e-08)               28   8.5  

>SB_1181| Best HMM Match : DUF1604 (HMM E-Value=0)
          Length = 1035

 Score =  109 bits (263), Expect = 2e-24
 Identities = 57/127 (44%), Positives = 78/127 (61%), Gaps = 1/127 (0%)
 Frame = +3

Query: 33  SSXPFASDPKKQSRYEQFLKGVVVE-ADEGDRLREWERNRELIEFEQAAKLYKPLSGVME 209
           S  PFA DP KQ RYE+FL G +   A  G+ L EWER RE  EF +AA LY+PL+  M 
Sbjct: 421 SFKPFAKDPAKQERYERFLSGEITSTAPTGNALTEWEREREREEFARAAILYRPLNQAMA 480

Query: 210 DRFTHASEPDDALNPLTAVARSSTGYGLATSEQIEAAKGGLYGAVTRVEIQWRPEALVCK 389
            RFT A + D+ L+    V+       +  S+Q +AA+  ++GA+TR   QW P+ ++CK
Sbjct: 481 SRFTSAKQSDE-LSFSDPVSEKV----MDKSDQFKAAEKKMFGALTRERFQWHPDRVLCK 535

Query: 390 RFNVPQP 410
           RFN+P P
Sbjct: 536 RFNIPDP 542


>SB_58305| Best HMM Match : Band_41 (HMM E-Value=4.8e-08)
          Length = 275

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +3

Query: 153 LIEFEQAAKLYKPLSGVMEDRFTHASEPDDALNPLTAVARSSTGYGL 293
           L  FE A K Y+P    ++   T    P++A       AR  T YG+
Sbjct: 99  LPHFELAVKFYEPYPSKLKHDMTRGLTPEEADTQYLEAARKLTMYGV 145


>SB_34296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3464

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 3/99 (3%)
 Frame = +3

Query: 405  QPGGANTEEKHQERPKISYSVFSYMESSVHDRDSFAKEQVS---FSGSKSLNREPVKIDT 575
            QP     EEK QERP +   +    E   HD  S    + S   F    +++R P  + T
Sbjct: 3323 QPADKKNEEKGQERPHLKLHLGDKHEE--HDSASPCSSETSPRFFDKYMAVHRFPDGLGT 3380

Query: 576  RPVSVTSTSNKTELVGAPKRMTVAELFLKESEQNKNEGV 692
               ++ +   KT L  A K+  V  + ++E  + + + V
Sbjct: 3381 ERPNLETLRRKTPL-KAGKKDAVDAILIQELREEEPQWV 3418


>SB_20559| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 351

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -2

Query: 287 VASGASGDRRQWVQSIVRFAGVRESILHNSA 195
           V S  + DR +W+Q+ V+  G+ E ++ NSA
Sbjct: 33  VRSQENSDRLEWLQNHVKREGLGEQLIFNSA 63


>SB_6397| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 178

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 318 PLLSAQKLLSRSQWSFWRPPSMG 250
           P +S  K  SR+ W+F+ PPS G
Sbjct: 3   PPVSVFKASSRADWTFFEPPSKG 25


>SB_58718| Best HMM Match : Pec_lyase_N (HMM E-Value=7.8)
          Length = 303

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 34/136 (25%), Positives = 56/136 (41%), Gaps = 11/136 (8%)
 Frame = +3

Query: 246 LNPLTAVARSSTGYGLATSEQIEAAKGGLYGAVTRVEIQ----WRPEALVCKRFNVPQPG 413
           + P TA AR S  +     + +     G+   V    ++    WR      +RF  P PG
Sbjct: 83  VEPYTAGARDSEKFVYPDIKSVRVTIDGMPNKVFSQGLRPTDFWREAE---RRFVRPSPG 139

Query: 414 GANTEEK---HQERPKISYSVFSYMESSVHDRDSFAKEQ--VS-FSGSKSLNREPVKIDT 575
           G  T E+    Q  P+ S ++ S +  S  +R +  +    VS +S   +   +P+ I  
Sbjct: 140 GGGTAERLPPRQSAPRRSMAITSLLCGSTFERRTTVQSMGVVSDWSIPATRGMDPINIPF 199

Query: 576 RPVSVTSTS-NKTELV 620
             + V  TS  KT  +
Sbjct: 200 NALIVGPTSCGKTRFI 215


>SB_57637| Best HMM Match : SRP40_C (HMM E-Value=2.3e-08)
          Length = 654

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
 Frame = +3

Query: 456 SYSVFSY-MESSVHDRDSFAKEQVSFSGSKSLNREPVKIDTRPVSVTSTSNKTELVGAPK 632
           ++++F+  +ESS   + SF+ + VSF   KS+N + +K D R  S    S KT+L G  K
Sbjct: 208 NHAIFNCRLESS---KPSFSVKSVSFRKIKSINIDTLKNDLRS-SELHHSPKTDLNGIVK 263

Query: 633 R 635
           +
Sbjct: 264 K 264


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,906,062
Number of Sequences: 59808
Number of extensions: 497328
Number of successful extensions: 1595
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1593
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2467263854
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)