Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_F13
(775 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q6AW71 Cluster: RNA-dependent RNA polymerase; n=1; Bomb... 52 1e-05
UniRef50_Q8UZB6 Cluster: Replicase; n=5; Grapevine fleck virus|R... 45 0.002
UniRef50_Q71EB6 Cluster: Replicase RdRp; n=1; Grapevine Red Glob... 43 0.007
UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10; Tym... 38 0.21
UniRef50_Q32WC7 Cluster: Replicase; n=1; Dulcamara mottle virus|... 38 0.37
UniRef50_Q5C3I4 Cluster: SJCHGC03138 protein; n=2; Schistosoma j... 37 0.64
UniRef50_UPI00015B5CAE Cluster: PREDICTED: similar to conserved ... 36 0.85
UniRef50_P10358 Cluster: RNA replicase polyprotein; n=8; Tymovir... 36 0.85
UniRef50_A7ER22 Cluster: Predicted protein; n=1; Sclerotinia scl... 36 1.1
UniRef50_P35928 Cluster: RNA replicase polyprotein; n=2; Erysimu... 36 1.1
UniRef50_P36304 Cluster: RNA replicase polyprotein; n=2; Tymovir... 35 2.6
UniRef50_Q9LMQ1 Cluster: F7H2.17 protein; n=2; Arabidopsis thali... 34 3.4
UniRef50_P20127 Cluster: RNA replicase polyprotein; n=11; Tymovi... 34 4.5
UniRef50_Q96EP5 Cluster: DAZ-associated protein 1; n=39; Euteleo... 34 4.5
UniRef50_Q4TA60 Cluster: Chromosome undetermined SCAF7445, whole... 33 6.0
UniRef50_Q0CQD0 Cluster: Predicted protein; n=1; Aspergillus ter... 33 6.0
UniRef50_UPI0000DB74BC Cluster: PREDICTED: similar to CG30084-PC... 33 7.9
UniRef50_UPI0000D55DA0 Cluster: PREDICTED: similar to sushi, von... 33 7.9
UniRef50_Q4RSI9 Cluster: Chromosome 13 SCAF15000, whole genome s... 33 7.9
UniRef50_Q91TW9 Cluster: Polyprotein; n=25; Marafivirus|Rep: Pol... 33 7.9
UniRef50_Q8LJ87 Cluster: Putative leucine-rich repeat/extensin 1... 33 7.9
UniRef50_A7SAB0 Cluster: Predicted protein; n=2; Nematostella ve... 33 7.9
UniRef50_O95104 Cluster: Splicing factor, arginine/serine-rich 1... 33 7.9
>UniRef50_Q6AW71 Cluster: RNA-dependent RNA polymerase; n=1; Bombyx
mori Macula-like latent virus|Rep: RNA-dependent RNA
polymerase - Bombyx mori Macula-like latent virus
Length = 1747
Score = 52.4 bits (120), Expect = 1e-05
Identities = 25/37 (67%), Positives = 29/37 (78%)
Frame = +1
Query: 4 WKRVCQKRSLLAXYYLGPAGAIRAPRALLAKLVLALE 114
+K+ + L YYLGPAGAIRAPRALLAKLVLAL+
Sbjct: 1595 FKKEFVRNGLFCGYYLGPAGAIRAPRALLAKLVLALD 1631
>UniRef50_Q8UZB6 Cluster: Replicase; n=5; Grapevine fleck virus|Rep:
Replicase - Grapevine fleck virus
Length = 1949
Score = 44.8 bits (101), Expect = 0.002
Identities = 19/28 (67%), Positives = 23/28 (82%)
Frame = +1
Query: 31 LLAXYYLGPAGAIRAPRALLAKLVLALE 114
L Y++GPAGA+RAPRAL AKL +ALE
Sbjct: 1808 LFCGYFVGPAGAVRAPRALFAKLAIALE 1835
>UniRef50_Q71EB6 Cluster: Replicase RdRp; n=1; Grapevine Red Globe
virus|Rep: Replicase RdRp - Grapevine Red Globe virus
Length = 424
Score = 43.2 bits (97), Expect = 0.007
Identities = 18/37 (48%), Positives = 26/37 (70%)
Frame = +1
Query: 4 WKRVCQKRSLLAXYYLGPAGAIRAPRALLAKLVLALE 114
+K + L YYLGPAGA+R+P AL AKL++A++
Sbjct: 190 FKTEVSRYGLFCGYYLGPAGAVRSPLALFAKLIIAVD 226
>UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10;
Tymoviridae|Rep: Replicase-associated protein -
Poinsettia mosaic virus
Length = 1987
Score = 38.3 bits (85), Expect = 0.21
Identities = 17/37 (45%), Positives = 24/37 (64%)
Frame = +1
Query: 4 WKRVCQKRSLLAXYYLGPAGAIRAPRALLAKLVLALE 114
+K K L YY+GPAGAIR+P L AK++ A++
Sbjct: 1621 FKTESTKHPLFCGYYVGPAGAIRSPITLFAKIMSAVD 1657
>UniRef50_Q32WC7 Cluster: Replicase; n=1; Dulcamara mottle virus|Rep:
Replicase - Dulcamara mottle virus
Length = 1742
Score = 37.5 bits (83), Expect = 0.37
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = +1
Query: 4 WKRVCQKRSLLAXYYLGPAGAIRAPRALLAKLVLA 108
+K C L YY+ P GA+R P AL AKL++A
Sbjct: 1587 FKTHCSAYPLFCGYYVSPVGAVRNPHALFAKLMIA 1621
>UniRef50_Q5C3I4 Cluster: SJCHGC03138 protein; n=2; Schistosoma
japonicum|Rep: SJCHGC03138 protein - Schistosoma
japonicum (Blood fluke)
Length = 156
Score = 36.7 bits (81), Expect = 0.64
Identities = 19/42 (45%), Positives = 19/42 (45%)
Frame = +1
Query: 457 PPPFFFXXGKXPPPXXFLXPPPFXPPXFXXXFFXKRGXXPPG 582
PPPFFF K PPP PPPF F F PPG
Sbjct: 37 PPPFFFNKKKRPPPPPGGPPPPFGGGGFPPFFHF---FPPPG 75
Score = 35.1 bits (77), Expect = 2.0
Identities = 34/101 (33%), Positives = 35/101 (34%), Gaps = 2/101 (1%)
Frame = +3
Query: 408 FFXXKKVXPPGXPXXXXXPLFFXFXKXAPPPXFFN--XXPLXXPXFXXXXFXXKGXFXXG 581
FF + V PP PLFF PPP FFN P P F G F
Sbjct: 14 FFFFRGVFPP-----RGGPLFFYGAPPPPPPFFFNKKKRPPPPPGGPPPPFGG-GGFPPF 67
Query: 582 XFFXKPPFXGXKKXAXFXXXFXAXXXGXPPPXGGXXFFFFF 704
F PP G A G PP GG F FFF
Sbjct: 68 FHFFPPPGGG-----------VAPPQGGGPPLGGGGFQFFF 97
>UniRef50_UPI00015B5CAE Cluster: PREDICTED: similar to conserved
hypothetical protein; n=1; Nasonia vitripennis|Rep:
PREDICTED: similar to conserved hypothetical protein -
Nasonia vitripennis
Length = 1774
Score = 36.3 bits (80), Expect = 0.85
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +1
Query: 439 VXPXXGPPPFFFXXGKXPPPXXFLXPPPFXPP 534
+ P PPP PPP F+ PPP PP
Sbjct: 287 ILPPPPPPPLLISGPPPPPPNAFMDPPPLPPP 318
>UniRef50_P10358 Cluster: RNA replicase polyprotein; n=8;
Tymovirus|Rep: RNA replicase polyprotein - Turnip yellow
mosaic virus
Length = 1844
Score = 36.3 bits (80), Expect = 0.85
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = +1
Query: 31 LLAXYYLGPAGAIRAPRALLAKLVLALE 114
L YY+GPAG IR P AL KL++A++
Sbjct: 1698 LFCGYYVGPAGCIRNPLALFCKLMIAVD 1725
>UniRef50_A7ER22 Cluster: Predicted protein; n=1; Sclerotinia
sclerotiorum 1980|Rep: Predicted protein - Sclerotinia
sclerotiorum 1980
Length = 420
Score = 35.9 bits (79), Expect = 1.1
Identities = 16/34 (47%), Positives = 16/34 (47%)
Frame = +1
Query: 433 PRVXPXXGPPPFFFXXGKXPPPXXFLXPPPFXPP 534
P P PPPF F PPP F PPP PP
Sbjct: 117 PTAPPPPPPPPFSFPPAPPPPPPPFSFPPP--PP 148
>UniRef50_P35928 Cluster: RNA replicase polyprotein; n=2; Erysimum
latent virus|Rep: RNA replicase polyprotein - Erysimum
latent virus (ELV)
Length = 1748
Score = 35.9 bits (79), Expect = 1.1
Identities = 16/26 (61%), Positives = 18/26 (69%)
Frame = +1
Query: 31 LLAXYYLGPAGAIRAPRALLAKLVLA 108
L YYLGP G IR P AL AKL++A
Sbjct: 1600 LFCGYYLGPQGCIRNPLALFAKLMIA 1625
>UniRef50_P36304 Cluster: RNA replicase polyprotein; n=2;
Tymovirus|Rep: RNA replicase polyprotein - Kennedya
yellow mosaic virus (strain Jervis bay) (KYMV)
Length = 1874
Score = 34.7 bits (76), Expect = 2.6
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = +1
Query: 31 LLAXYYLGPAGAIRAPRALLAKLVLALE 114
L YY G AGAIR P AL +KL++A++
Sbjct: 1727 LFCGYYTGSAGAIRNPLALFSKLMIAID 1754
>UniRef50_Q9LMQ1 Cluster: F7H2.17 protein; n=2; Arabidopsis
thaliana|Rep: F7H2.17 protein - Arabidopsis thaliana
(Mouse-ear cress)
Length = 1006
Score = 34.3 bits (75), Expect = 3.4
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = +1
Query: 445 PXXGPPPFFFXXGKXPPPXXFLXPPPFXP 531
P PPPFFF PPP + PPP P
Sbjct: 162 PPPSPPPFFFFPS--PPPPVIVFPPPLVP 188
>UniRef50_P20127 Cluster: RNA replicase polyprotein; n=11;
Tymovirus|Rep: RNA replicase polyprotein - Ononis yellow
mosaic virus
Length = 1776
Score = 33.9 bits (74), Expect = 4.5
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +1
Query: 31 LLAXYYLGPAGAIRAPRALLAKLVLALERPEPFLT 135
L YY+GP G R P AL AKL+++ ++ F T
Sbjct: 1623 LFCGYYVGPTGCCRNPFALFAKLMISYDKGNLFET 1657
>UniRef50_Q96EP5 Cluster: DAZ-associated protein 1; n=39;
Euteleostomi|Rep: DAZ-associated protein 1 - Homo
sapiens (Human)
Length = 407
Score = 33.9 bits (74), Expect = 4.5
Identities = 18/39 (46%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Frame = +2
Query: 425 GFXP--GFXPGXXXPPFFSFXEXXPPPXXF*XXPPFXPP 535
GF P GF G PP FSF PPP PP PP
Sbjct: 273 GFPPPQGFPQGYGAPPQFSFGYGPPPPPPDQFAPPGVPP 311
>UniRef50_Q4TA60 Cluster: Chromosome undetermined SCAF7445, whole
genome shotgun sequence; n=2; Tetraodontidae|Rep:
Chromosome undetermined SCAF7445, whole genome shotgun
sequence - Tetraodon nigroviridis (Green puffer)
Length = 410
Score = 33.5 bits (73), Expect = 6.0
Identities = 16/44 (36%), Positives = 19/44 (43%)
Frame = +1
Query: 403 KIFXXKKRFXPRVXPXXGPPPFFFXXGKXPPPXXFLXPPPFXPP 534
+IF +K+ R P PPF F PP PPP PP
Sbjct: 84 RIFIKEKKEHRRDFPLHALPPFGFGHPPPPPGAHHTLPPPMVPP 127
>UniRef50_Q0CQD0 Cluster: Predicted protein; n=1; Aspergillus
terreus NIH2624|Rep: Predicted protein - Aspergillus
terreus (strain NIH 2624)
Length = 313
Score = 33.5 bits (73), Expect = 6.0
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = +1
Query: 433 PRVXPXXGPPPFFFXXGKXPPPXXFLXPPPFXPP 534
P P GPPP F + PPP PPP PP
Sbjct: 258 PHSPPPHGPPPHFPPPAEGPPPPH--GPPPHSPP 289
>UniRef50_UPI0000DB74BC Cluster: PREDICTED: similar to CG30084-PC,
isoform C; n=1; Apis mellifera|Rep: PREDICTED: similar to
CG30084-PC, isoform C - Apis mellifera
Length = 1773
Score = 33.1 bits (72), Expect = 7.9
Identities = 14/26 (53%), Positives = 15/26 (57%)
Frame = +3
Query: 75 SPCPTGQTCVSPRTTRTLPDKIASLP 152
SPCP G CV+P T LP A LP
Sbjct: 1392 SPCPDGSVCVAPCTKPGLPPSRAKLP 1417
>UniRef50_UPI0000D55DA0 Cluster: PREDICTED: similar to sushi, von
Willebrand factor type A, EGF and pentraxin domain
containing 1; n=1; Tribolium castaneum|Rep: PREDICTED:
similar to sushi, von Willebrand factor type A, EGF and
pentraxin domain containing 1 - Tribolium castaneum
Length = 1857
Score = 33.1 bits (72), Expect = 7.9
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = +3
Query: 51 GTGRSHSCSPCPTGQTCVSPRTTRTLPD 134
GTG +SCSPCP GQ R PD
Sbjct: 298 GTGLKNSCSPCPVGQYSDGLNLCRPCPD 325
>UniRef50_Q4RSI9 Cluster: Chromosome 13 SCAF15000, whole genome
shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
Chromosome 13 SCAF15000, whole genome shotgun sequence -
Tetraodon nigroviridis (Green puffer)
Length = 307
Score = 33.1 bits (72), Expect = 7.9
Identities = 18/45 (40%), Positives = 19/45 (42%)
Frame = +1
Query: 457 PPPFFFXXGKXPPPXXFLXPPPFXPPXFXXXFFXKRGXXPPGXFF 591
PPPFF PP L PPP+ P FF PP FF
Sbjct: 215 PPPFFSPPPSFPP----LPPPPYFSPLPLPPFFLLPFLFPPPPFF 255
>UniRef50_Q91TW9 Cluster: Polyprotein; n=25; Marafivirus|Rep:
Polyprotein - Maize rayado fino virus
Length = 2027
Score = 33.1 bits (72), Expect = 7.9
Identities = 13/24 (54%), Positives = 20/24 (83%)
Frame = +1
Query: 43 YYLGPAGAIRAPRALLAKLVLALE 114
YY+G GA+R+P AL AKL++A++
Sbjct: 1637 YYVGFTGAVRSPPALFAKLMIAVD 1660
>UniRef50_Q8LJ87 Cluster: Putative leucine-rich repeat/extensin 1;
n=4; Oryza sativa|Rep: Putative leucine-rich
repeat/extensin 1 - Oryza sativa subsp. japonica (Rice)
Length = 503
Score = 33.1 bits (72), Expect = 7.9
Identities = 19/67 (28%), Positives = 21/67 (31%)
Frame = +1
Query: 391 SXXKKIFXXKKRFXPRVXPXXGPPPFFFXXGKXPPPXXFLXPPPFXPPXFXXXFFXKRGX 570
S +F F P P PPP PPP PPP P +
Sbjct: 435 SPPSPVFSPPPAFSPPPPPKTSPPP-PVSSPPPPPPPTMSPPPPIQEPVILPPILSAKYQ 493
Query: 571 XPPGXFF 591
PP FF
Sbjct: 494 SPPPPFF 500
>UniRef50_A7SAB0 Cluster: Predicted protein; n=2; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 4558
Score = 33.1 bits (72), Expect = 7.9
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +3
Query: 54 TGRSHSCSPCPTGQTCVSP 110
+ R+ CSPCPTG TC +P
Sbjct: 138 SSRASYCSPCPTGYTCTNP 156
>UniRef50_O95104 Cluster: Splicing factor, arginine/serine-rich 15;
n=19; Tetrapoda|Rep: Splicing factor,
arginine/serine-rich 15 - Homo sapiens (Human)
Length = 1147
Score = 33.1 bits (72), Expect = 7.9
Identities = 20/50 (40%), Positives = 20/50 (40%)
Frame = +1
Query: 433 PRVXPXXGPPPFFFXXGKXPPPXXFLXPPPFXPPXFXXXFFXKRGXXPPG 582
P P G PP F G PPP PPPF P F G PPG
Sbjct: 698 PAFTPPLGIPPPGFGPGVPPPP----PPPPFLRPGFNPMHLPP-GFLPPG 742
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 460,244,902
Number of Sequences: 1657284
Number of extensions: 7519113
Number of successful extensions: 19420
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 13405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17854
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 65027411410
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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