Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_F13
         (775 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0892 + 7037384-7037795,7038447-7038962,7039507-7039593,703...    30   1.8  
07_01_0479 + 3606663-3607448                                           30   2.3  
09_02_0543 + 10427321-10428315,10428440-10429154                       29   3.1  
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330...    29   4.1  
03_05_0067 - 20460206-20460703,20461255-20461530                       29   4.1  
12_02_0674 - 21745321-21746223,21746229-21747608                       28   7.2  
11_03_0206 + 11655132-11655232,11655433-11655823                       28   9.5  
01_05_0490 + 22672241-22674679                                         28   9.5  

>01_01_0892 +
           7037384-7037795,7038447-7038962,7039507-7039593,
           7039698-7039768,7040148-7040224,7040380-7040527,
           7040973-7041134,7041374-7041694
          Length = 597

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 18/60 (30%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
 Frame = +1

Query: 406 IFXXKKRFXPRVXPXXGPPPFFFXXGKXPPPXXFLXPPPFXPPXFXXXF--FXKRGXXPP 579
           +F  KKR      P   PP      G  PPP     PPPF    +   +  + + G  PP
Sbjct: 99  LFKKKKRHHHHHPPPPPPPHLLHYYGHPPPPPP--PPPPFKGDHYGGVYQNWQQNGPPPP 156


>07_01_0479 + 3606663-3607448
          Length = 261

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 18/44 (40%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
 Frame = +1

Query: 454 GPPPFFFXXGKXPPPXXFLX-PPPFXPPXFXXXFFXKRGXXPPG 582
           G PP F   G  PPP  F+  PPP  PP          G  PPG
Sbjct: 192 GVPPAF-PGGPPPPPGPFMRGPPPMGPPQVRPGM---PGGPPPG 231


>09_02_0543 + 10427321-10428315,10428440-10429154
          Length = 569

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 13/33 (39%), Positives = 14/33 (42%)
 Frame = +1

Query: 433 PRVXPXXGPPPFFFXXGKXPPPXXFLXPPPFXP 531
           P   P   PPP     G  PPP   + PPP  P
Sbjct: 18  PTPAPQATPPPAIPESGPPPPPAPDMPPPPPTP 50


>08_01_0375 -
           3307206-3307316,3307870-3307965,3308061-3308132,
           3308247-3308315,3308427-3308513,3308753-3308858,
           3309118-3309237,3309327-3309406,3309497-3309878,
           3310746-3310814,3311460-3312202
          Length = 644

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 16/38 (42%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
 Frame = +1

Query: 433 PRVXPXXGPPPFFFXXGKXPP----PXXFLXPPPFXPP 534
           P + P   PPP     G  PP    P  FL PPP  PP
Sbjct: 23  PPMNPYGPPPPQQPAYGHMPPPQGAPPPFLAPPPPPPP 60


>03_05_0067 - 20460206-20460703,20461255-20461530
          Length = 257

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +1

Query: 457 PPPFFFXXGKXPPPXXFLXPPPFXPPXF 540
           PPP  +  G  PPP  F   PP  PP +
Sbjct: 5   PPPPQWAMGPPPPPQYFQAGPPPPPPQY 32


>12_02_0674 - 21745321-21746223,21746229-21747608
          Length = 760

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = +1

Query: 421 KRFXPRVXPXXGPPPFFFXXGKXPPPXXFLXPPPFXPP 534
           K+  P   P   PPP      + P P  ++ PP   PP
Sbjct: 414 KKITP-TPPTLAPPPLISPKEETPSPSPYIEPPKSSPP 450


>11_03_0206 + 11655132-11655232,11655433-11655823
          Length = 163

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +3

Query: 9   KSLSETVSSCXLLLGTGRSHSCSPCPTGQTCVSPR-TTRTLPDKIASLPP 155
           +  S +++ C L L + R+H+C   P GQ   +PR    ++     S PP
Sbjct: 47  RGCSASITLC-LGLPSSRAHACRAVPDGQNPPNPRPALHSISQSSRSFPP 95


>01_05_0490 + 22672241-22674679
          Length = 812

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/40 (35%), Positives = 16/40 (40%)
 Frame = +1

Query: 445 PXXGPPPFFFXXGKXPPPXXFLXPPPFXPPXFXXXFFXKR 564
           P   PPP      K P P     PPP  PP     F+ +R
Sbjct: 641 PPPPPPPTTRRSRKPPQPPSRPAPPPPPPPQQQPPFYPRR 680


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,440,102
Number of Sequences: 37544
Number of extensions: 287911
Number of successful extensions: 829
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)