Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_F13
         (775 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.59 
SB_12758| Best HMM Match : EGF (HMM E-Value=2.5e-15)                   31   0.78 
SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  
SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09)                   29   3.2  
SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_19504| Best HMM Match : FH2 (HMM E-Value=1.2e-30)                   28   7.3  
SB_53865| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.6  
SB_39421| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.6  
SB_33219| Best HMM Match : RhoGAP (HMM E-Value=0.0014)                 28   9.6  
SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18)              28   9.6  
SB_812| Best HMM Match : FH2 (HMM E-Value=0)                           28   9.6  

>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 550

 Score = 31.9 bits (69), Expect = 0.59
 Identities = 19/50 (38%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
 Frame = +1

Query: 433 PRVXPXXGPPPFFFXXGKXPPPXXFLXPP-PFXPPXFXXXFFXKRGXXPP 579
           P++ P   PPP     G  PPP     PP  F PP F       RG  PP
Sbjct: 452 PQLPPNLPPPPGGMR-GMPPPPMGMYPPPRGFPPPPFGPPPPFYRGPPPP 500



 Score = 30.3 bits (65), Expect = 1.8
 Identities = 19/42 (45%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = +1

Query: 457 PPPFFFXXGKXPPPXXFLXPPPF-XPPXFXXXFFXKRGXXPP 579
           PPP     G  PPP  F  PPPF  PP F       RG  PP
Sbjct: 470 PPPM----GMYPPPRGF-PPPPFGPPPPFYRGPPPPRGMPPP 506


>SB_12758| Best HMM Match : EGF (HMM E-Value=2.5e-15)
          Length = 165

 Score = 31.5 bits (68), Expect = 0.78
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 5/28 (17%)
 Frame = +3

Query: 54  TGRSHSCS-----PCPTGQTCVSPRTTR 122
           TG   +C+     PCP G TCV+PRT R
Sbjct: 58  TGDGRACTRICDHPCPYGMTCVAPRTCR 85


>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 290

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +1

Query: 457 PPPFFFXXGKXPPPXXFLXPPPFXPP 534
           PPP +      PPP     PPP+ PP
Sbjct: 157 PPPLYPPPPNPPPPNAPYPPPPYPPP 182


>SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 669

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 22/73 (30%), Positives = 22/73 (30%)
 Frame = +1

Query: 433 PRVXPXXGPPPFFFXXGKXPPPXXFLXPPPFXPPXFXXXFFXKRGXXPPGXFFXNXXXLG 612
           P   P   PPP     G  PPP     PPP  PP        K G  P G    N     
Sbjct: 380 PTNGPPPPPPP---TNGPPPPPPPTNGPPPPPPPTNGPPSEGKCGRKPAGARIINGQNAQ 436

Query: 613 XKXGPXXXXFXGR 651
               P      GR
Sbjct: 437 PHSWPWQISLRGR 449


>SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09)
          Length = 1103

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +1

Query: 433 PRVXPXXGPPPFFFXXGKXPPPXXFLXPPP-FXPP 534
           P + P   PPP +      PPP  ++ PPP + PP
Sbjct: 75  PMMMPFPPPPPIYM-----PPPPVYMPPPPVYMPP 104


>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5222

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 51   GTGRSHSCSPCPTGQTCVS 107
            G G    C+PCP G+ CV+
Sbjct: 2868 GAGTVDDCTPCPAGRYCVN 2886


>SB_19504| Best HMM Match : FH2 (HMM E-Value=1.2e-30)
          Length = 739

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = +1

Query: 445 PXXGPPPFFFXXGKXPPPXXFLXPPP 522
           P   PPP F      PPP  F  PPP
Sbjct: 198 PPPPPPPGFPGGAPPPPPPPFGAPPP 223



 Score = 27.9 bits (59), Expect = 9.6
 Identities = 14/30 (46%), Positives = 14/30 (46%)
 Frame = +1

Query: 445 PXXGPPPFFFXXGKXPPPXXFLXPPPFXPP 534
           P   PPP  F  G  PPP     PPPF  P
Sbjct: 197 PPPPPPPPGFPGGAPPPP-----PPPFGAP 221


>SB_53865| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 919

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 19/51 (37%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
 Frame = +1

Query: 433 PRVXPXXGPPPFFFXXGKXPPPXXFLXPPPF--XPPXFXXXFFXKRGXXPP 579
           P   P  GPPP      +  PP  F  PP F   PP F    F  +G  PP
Sbjct: 276 PGFPPRWGPPPHMPPDYRGFPPPNF-PPPDFSRPPPNFNDPAF--QGRPPP 323


>SB_39421| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1810

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 79   GEHEWLRPVPSNSXQEETVSDK 14
            GEHEWL   PS + Q  T  D+
Sbjct: 1438 GEHEWLYVPPSTASQSTTPGDR 1459


>SB_33219| Best HMM Match : RhoGAP (HMM E-Value=0.0014)
          Length = 399

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 75  SPCPTGQTCVSPRTTRTLPDKIASLP 152
           +P P  + C +PR  +T+P    SLP
Sbjct: 218 APAPPPRPCPAPRVRKTIPSSTDSLP 243


>SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18)
          Length = 1023

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 72  CSPCPTGQTCVSPRTTR 122
           C+PCP G +C +P + R
Sbjct: 843 CTPCPAGSSCPTPSSPR 859


>SB_812| Best HMM Match : FH2 (HMM E-Value=0)
          Length = 1430

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +1

Query: 457 PPPFFFXXGKXPPPXXFLXPPPFXPP 534
           PP  FF     PPP   + PPP  PP
Sbjct: 644 PPNPFFGGIPPPPPGGGMFPPPPPPP 669


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,778,443
Number of Sequences: 59808
Number of extensions: 214447
Number of successful extensions: 677
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)