Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_F13
(775 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical ... 31 0.69
AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical ... 31 0.69
U39848-1|AAT81210.1| 1338|Caenorhabditis elegans Latrophilin rec... 31 0.91
AY314772-1|AAQ84879.1| 1338|Caenorhabditis elegans latrophilin-l... 31 0.91
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z81560-2|CAB04547.1| 1021|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z75539-3|CAA99845.1| 228|Caenorhabditis elegans Hypothetical pr... 28 8.5
Z75531-13|CAA99808.1| 228|Caenorhabditis elegans Hypothetical p... 28 8.5
>AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical
protein R148.5b protein.
Length = 505
Score = 31.5 bits (68), Expect = 0.69
Identities = 20/55 (36%), Positives = 20/55 (36%), Gaps = 3/55 (5%)
Frame = +1
Query: 424 RFXPRVXPXXGPPPFFFXXGKXPPPXXFLXPPP---FXPPXFXXXFFXKRGXXPP 579
R P P P P PPP F PPP F PP F RG PP
Sbjct: 268 RGPPPHHPYGPPHPMHHPYAMMPPPFGFFPPPPRGHFPPP---PPHFMGRGMPPP 319
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/49 (38%), Positives = 20/49 (40%), Gaps = 8/49 (16%)
Frame = +1
Query: 457 PPPFFFXXGKX-----PPPXXFLX---PPPFXPPXFXXXFFXKRGXXPP 579
PPPF F PPP F+ PPPF PP RG PP
Sbjct: 290 PPPFGFFPPPPRGHFPPPPPHFMGRGMPPPFMPPPPHFGMGPPRGFMPP 338
>AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical
protein R148.5a protein.
Length = 528
Score = 31.5 bits (68), Expect = 0.69
Identities = 20/55 (36%), Positives = 20/55 (36%), Gaps = 3/55 (5%)
Frame = +1
Query: 424 RFXPRVXPXXGPPPFFFXXGKXPPPXXFLXPPP---FXPPXFXXXFFXKRGXXPP 579
R P P P P PPP F PPP F PP F RG PP
Sbjct: 268 RGPPPHHPYGPPHPMHHPYAMMPPPFGFFPPPPRGHFPPP---PPHFMGRGMPPP 319
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/49 (38%), Positives = 20/49 (40%), Gaps = 8/49 (16%)
Frame = +1
Query: 457 PPPFFFXXGKX-----PPPXXFLX---PPPFXPPXFXXXFFXKRGXXPP 579
PPPF F PPP F+ PPPF PP RG PP
Sbjct: 290 PPPFGFFPPPPRGHFPPPPPHFMGRGMPPPFMPPPPHFGMGPPRGFMPP 338
>U39848-1|AAT81210.1| 1338|Caenorhabditis elegans Latrophilin
receptor protein 2 protein.
Length = 1338
Score = 31.1 bits (67), Expect = 0.91
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +3
Query: 24 TVSSCXLLLGTGRSHSCSPCPTGQTCVSPRTTRTLPDKIASL 149
T ++C LL+ TG S S S CP+ + + T+P AS+
Sbjct: 400 TPNNCQLLMVTGSSTSYSQCPSSPSSTANVICSTVPQSTASV 441
>AY314772-1|AAQ84879.1| 1338|Caenorhabditis elegans latrophilin-like
protein LAT-2 protein.
Length = 1338
Score = 31.1 bits (67), Expect = 0.91
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +3
Query: 24 TVSSCXLLLGTGRSHSCSPCPTGQTCVSPRTTRTLPDKIASL 149
T ++C LL+ TG S S S CP+ + + T+P AS+
Sbjct: 400 TPNNCQLLMVTGSSTSYSQCPSSPSSTANVICSTVPQSTASV 441
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = +1
Query: 457 PPPFFFXXGKXPPPXXFLXPPPFXPP 534
PPP G PPP F PPP PP
Sbjct: 95 PPPPPMMGGIPPPPPMFGAPPPPPPP 120
>Z81560-2|CAB04547.1| 1021|Caenorhabditis elegans Hypothetical
protein K02E2.2 protein.
Length = 1021
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = +1
Query: 457 PPPFFFXXGKXPPPXXFLXPPPF 525
PPPFF PPP PPPF
Sbjct: 777 PPPFFALPVPPPPPVPPPPPPPF 799
>Z75539-3|CAA99845.1| 228|Caenorhabditis elegans Hypothetical
protein C54D10.10 protein.
Length = 228
Score = 27.9 bits (59), Expect = 8.5
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Frame = +3
Query: 3 LEKSLSETVSSCXLLLGTG---RSHSC-SPCPTGQTCVSPRTTRTLPDKIASLP 152
+ K +S V++C L ++ C + CPTG C PD + SLP
Sbjct: 122 VNKDMSLIVNACKLPTDAKIVTKAQKCDNGCPTGYRCTKKNFCCPYPDHVCSLP 175
>Z75531-13|CAA99808.1| 228|Caenorhabditis elegans Hypothetical
protein C54D10.10 protein.
Length = 228
Score = 27.9 bits (59), Expect = 8.5
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Frame = +3
Query: 3 LEKSLSETVSSCXLLLGTG---RSHSC-SPCPTGQTCVSPRTTRTLPDKIASLP 152
+ K +S V++C L ++ C + CPTG C PD + SLP
Sbjct: 122 VNKDMSLIVNACKLPTDAKIVTKAQKCDNGCPTGYRCTKKNFCCPYPDHVCSLP 175
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,371,654
Number of Sequences: 27780
Number of extensions: 190891
Number of successful extensions: 534
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -