Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_F13
(775 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g20850.1 68416.m02636 proline-rich family protein contains pr... 31 1.1
At3g22800.1 68416.m02874 leucine-rich repeat family protein / ex... 30 1.5
At1g67770.1 68414.m07733 RNA-binding protein, putative similar t... 30 1.5
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex... 30 2.0
At4g33970.1 68417.m04820 leucine-rich repeat family protein / ex... 29 2.6
At4g13390.1 68417.m02092 proline-rich extensin-like family prote... 29 3.4
At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family... 29 3.4
At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associa... 29 4.5
At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associa... 29 4.5
At3g49840.1 68416.m05449 proline-rich family protein contains pr... 29 4.5
At5g14540.1 68418.m01704 proline-rich family protein contains pr... 28 6.0
At3g19320.1 68416.m02450 leucine-rich repeat family protein cont... 28 6.0
At2g27390.1 68415.m03306 proline-rich family protein contains pr... 28 6.0
At1g12040.1 68414.m01390 leucine-rich repeat family protein / ex... 28 7.9
>At3g20850.1 68416.m02636 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 134
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Frame = +1
Query: 457 PPPFFFXXGKXPPPXXFLXPP-PFXPPXFXXXFFXKRGXXPP 579
P P++ PPP PP F PP ++ ++ PP
Sbjct: 73 PTPYYSPPADLPPPTPIYPPPVAFPPPQAYQAYYYRKSPPPP 114
>At3g22800.1 68416.m02874 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycsimilar to extensin-like protein [Lycopersicon
esculentum] gi|5917664|gb|AAD55979; contains
leucine-rich repeats, Pfam:PF00560; contains proline
rich extensin domains, INTERPRO:IPR002965
Length = 470
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 445 PXXGPPPFFFXXGKXPPPXXFLXPPPFXPP 534
P PPP+ + PPP ++ PPP PP
Sbjct: 416 PPPSPPPYVYP----PPPPPYVYPPPPSPP 441
>At1g67770.1 68414.m07733 RNA-binding protein, putative similar to
terminal ear1 gb|AAC39463.1
Length = 527
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = +1
Query: 433 PRVXPXXGPPPFFFXXGKXPPPXXFLXPPPFXPP 534
P P PPP +F PPP PPP PP
Sbjct: 44 PPPPPPPPPPPLYFSYFSLPPP----PPPPHLPP 73
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +3
Query: 666 PPPXGGXXFFFFFXXPPPPXEXKXPP 743
PPP +F +F PPPP PP
Sbjct: 48 PPPPPPPLYFSYFSLPPPPPPPHLPP 73
>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 760
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/30 (40%), Positives = 13/30 (43%)
Frame = +1
Query: 445 PXXGPPPFFFXXGKXPPPXXFLXPPPFXPP 534
P PPP + PPP PPP PP
Sbjct: 428 PPSPPPPVYSPPPPPPPPPPVYSPPPPPPP 457
Score = 28.3 bits (60), Expect = 6.0
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +1
Query: 457 PPPFFFXXGKXPPPXXFLXPPP 522
PPP ++ PPP + PPP
Sbjct: 653 PPPVYYSSPPPPPPVHYSSPPP 674
>At4g33970.1 68417.m04820 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 699
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/38 (36%), Positives = 15/38 (39%)
Frame = +1
Query: 421 KRFXPRVXPXXGPPPFFFXXGKXPPPXXFLXPPPFXPP 534
KR P P PPP + PPP PP PP
Sbjct: 514 KRRSPPPAPVNSPPPPVYSPPPPPPPVHSPPPPVHSPP 551
>At4g13390.1 68417.m02092 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 429
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +1
Query: 433 PRVXPXXGPPPFFFXXGKXPPPXXFLXPPPFXPPXF 540
PRV PPP+ + PPP + PPP PP +
Sbjct: 324 PRVDYKSPPPPYVY--NSLPPPYVYNSPPP--PPYY 355
>At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family
protein Common family members: At4g18570, At4g04980,
At5g61090 [Arabidopsis thaliana]; identical to cDNA
CHUP1 for actin binding protein GI:28071264
Length = 1004
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = +1
Query: 445 PXXGPPPFFFXXGKXPPPXXFLXPPPFXPP 534
P GPPP G PPP PPP PP
Sbjct: 675 PGGGPPPPPPPPGGGPPPPPGGGPPPPPPP 704
>At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|Q05856 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Drosophila melanogaster}
Length = 257
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/43 (37%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Frame = +1
Query: 457 PPPFFFXXGKXPPPXXFLXPPPFXP--PXFXXXFFXKRGXXPP 579
PPP G PPP PPP P P F R PP
Sbjct: 210 PPPGGMMRGPPPPPHGMQGPPPPRPGMPPAPGGFAPPRPGMPP 252
>At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|Q05856 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Drosophila melanogaster}
Length = 257
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/43 (37%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Frame = +1
Query: 457 PPPFFFXXGKXPPPXXFLXPPPFXP--PXFXXXFFXKRGXXPP 579
PPP G PPP PPP P P F R PP
Sbjct: 210 PPPGGMMRGPPPPPHGMQGPPPPRPGMPPAPGGFAPPRPGMPP 252
>At3g49840.1 68416.m05449 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 606
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/45 (26%), Positives = 18/45 (40%)
Frame = +1
Query: 445 PXXGPPPFFFXXGKXPPPXXFLXPPPFXPPXFXXXFFXKRGXXPP 579
P PPP + + PP + P + PP + + G PP
Sbjct: 491 PVSAPPPQGYPPKEGYPPAGYPPPAGYPPPQYPQAGYPPAGYPPP 535
>At5g14540.1 68418.m01704 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 547
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +1
Query: 457 PPPFFFXXGKXPPPXXFLXPPPFXPP 534
PPP + PPP L PP+ PP
Sbjct: 306 PPPTIQPPYQPPPPTQSLHQPPYQPP 331
>At3g19320.1 68416.m02450 leucine-rich repeat family protein
contains leucine-rich repeats, Pfam:PF00560;
Length = 493
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/35 (37%), Positives = 14/35 (40%)
Frame = +1
Query: 457 PPPFFFXXGKXPPPXXFLXPPPFXPPXFXXXFFXK 561
PPP+ PPP L PPP P F K
Sbjct: 92 PPPYHHYITPSPPPPRPLPPPPPPPLHFSSPLIKK 126
>At2g27390.1 68415.m03306 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 134
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/31 (45%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Frame = +1
Query: 445 PXXGPPPFFFXXGKXPP-PXXFLXPPPFXPP 534
P PPPF PP P F PPP PP
Sbjct: 52 PPRLPPPFPALFPPEPPLPPRFELPPPLFPP 82
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/33 (42%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Frame = +1
Query: 445 PXXGPPPFFFXXGKXPPPXXFLXPP-PFXPPXF 540
P PPP + PPP L PP P PP F
Sbjct: 41 PPPSPPPSPSSPPRLPPPFPALFPPEPPLPPRF 73
>At1g12040.1 68414.m01390 leucine-rich repeat family protein /
extensin family protein (LRX1) similar to extensin-like
protein [Lycopersicon esculentum]
gi|5917664|gb|AAD55979; contains leucine-rich repeats,
Pfam:PF00560; contains proline rich extensin domains,
INTERPRO:IPR002965
Length = 744
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/35 (34%), Positives = 15/35 (42%)
Frame = +2
Query: 419 KKGFXPGFXPGXXXPPFFSFXEXXPPPXXF*XXPP 523
K+G P P PP +S+ PPP PP
Sbjct: 693 KEGHPPQATPSYEPPPEYSYSSSPPPPSPTSYFPP 727
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,892,647
Number of Sequences: 28952
Number of extensions: 199015
Number of successful extensions: 1320
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1091
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1726528800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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