Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_F08
(852 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g15830.1 68414.m01900 expressed protein 31 1.3
At4g09360.1 68417.m01545 disease resistance protein (NBS-LRR cla... 29 3.0
At5g40580.2 68418.m04925 20S proteasome beta subunit B (PBB2) (P... 28 6.9
At5g40580.1 68418.m04924 20S proteasome beta subunit B (PBB2) (P... 28 6.9
At3g55220.1 68416.m06133 splicing factor, putative contains CPSF... 28 6.9
At3g55200.1 68416.m06131 splicing factor, putative contains CPSF... 28 6.9
At3g27430.2 68416.m03429 20S proteasome beta subunit B (PBB1) id... 28 9.1
At3g27430.1 68416.m03428 20S proteasome beta subunit B (PBB1) id... 28 9.1
At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family... 28 9.1
>At1g15830.1 68414.m01900 expressed protein
Length = 483
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Frame = -2
Query: 761 PTAKHGAGRQRVXPGARXPGKTXG---TLPRELPPRHGPGXAP 642
P K G G + V PGA P + G +P PP+ G G P
Sbjct: 139 PPPKRGGGGEPVIPGAPPPKRGGGGEPVIPGAPPPKRGGGGEP 181
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Frame = -2
Query: 761 PTAKHGAGRQRVXPGARXPGKTXG---TLPRELPPRHGPGXAP 642
P K G G + V PGA P + G +P PP+ G G P
Sbjct: 171 PPPKRGGGGEPVIPGAPPPKRGGGGEPVIPGAPPPKRGGGGEP 213
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Frame = -2
Query: 758 TAKHGAGRQRVXPGARXPGKTXG--TLPRELPPRHGPGXAP 642
+A G G + V PGA P + G +P PP G G P
Sbjct: 93 SATRGGGGEPVIPGAPPPNRGGGETVIPGAPPPIRGGGGEP 133
>At4g09360.1 68417.m01545 disease resistance protein (NBS-LRR
class), putative domain signature NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 853
Score = 29.5 bits (63), Expect = 3.0
Identities = 23/72 (31%), Positives = 30/72 (41%)
Frame = +2
Query: 41 HKMSTTYIILLPFLLTCAIASAAECENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHL 220
H ST + P LL+ A CE + L S YD D I +NLT +L
Sbjct: 718 HGTSTKISLFTPTLLSFAACILISCERSFYLQFPAFS----YDWNRKDDEVISINLTPNL 773
Query: 221 RHANIRESESTV 256
++ E E TV
Sbjct: 774 NLSSEIEEEETV 785
>At5g40580.2 68418.m04925 20S proteasome beta subunit B (PBB2)
(PRCFC) identical to 20S proteasome beta subunit PBB2
[Arabidopsis thaliana] GI:3421104, cDNA proteasome
subunit prcfc GI:2511575
Length = 274
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +2
Query: 68 LLPFLLTCAIASAAECENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHLRH 226
+ P + C +AA+ E T M+ S L + ++ DS++V LTL +H
Sbjct: 76 MAPNIYCCGAGTAADTEAVTD---MVSSQLRLHRYQTGRDSRVVTALTLLKKH 125
>At5g40580.1 68418.m04924 20S proteasome beta subunit B (PBB2)
(PRCFC) identical to 20S proteasome beta subunit PBB2
[Arabidopsis thaliana] GI:3421104, cDNA proteasome
subunit prcfc GI:2511575
Length = 274
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +2
Query: 68 LLPFLLTCAIASAAECENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHLRH 226
+ P + C +AA+ E T M+ S L + ++ DS++V LTL +H
Sbjct: 76 MAPNIYCCGAGTAADTEAVTD---MVSSQLRLHRYQTGRDSRVVTALTLLKKH 125
>At3g55220.1 68416.m06133 splicing factor, putative contains CPSF A
subunit region (PF03178); contains weak WD-40 repeat
(PF00400); similar to Splicing factor 3B subunit 3
(SF3b130)/spliceosomal protein/Splicing factor 3B
subunit 3 (SAP 130)(KIAA0017)(SP:Q15393) Homo sapiens,
EMBL:HSAJ1443_1
Length = 1214
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -2
Query: 425 GRGERSPRRWLQPRLAVPRQASTSVPRTPA 336
GRG RS R L+P LA+ A + +P P+
Sbjct: 426 GRGPRSSLRILRPGLAITEMAVSQLPGQPS 455
>At3g55200.1 68416.m06131 splicing factor, putative contains CPSF A
subunit region (PF03178); contains weak WD-40 repeat
(PF00400); similar to Splicing factor 3B subunit 3
(SF3b130)/spliceosomal protein/Splicing factor 3B
subunit 3 (SAP 130)(KIAA0017)(SP:Q15393) Homo sapiens,
EMBL:HSAJ1443_1
Length = 1214
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -2
Query: 425 GRGERSPRRWLQPRLAVPRQASTSVPRTPA 336
GRG RS R L+P LA+ A + +P P+
Sbjct: 426 GRGPRSSLRILRPGLAITEMAVSQLPGQPS 455
>At3g27430.2 68416.m03429 20S proteasome beta subunit B (PBB1)
identical to 20S proteasome beta subunit PBB1 (PBB1)
GB:AAC32066 [Arabidopsis thaliana] (Genetics 149 (2),
677-692 (1998)); contains Pfam profile: PF00227
proteasome A-type and B-type;
Length = 273
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +2
Query: 68 LLPFLLTCAIASAAECENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHLRH 226
+ P + C +AA+ E T M+ S L + ++ DS+++ LTL +H
Sbjct: 76 MAPNIYCCGAGTAADTEAVTD---MVSSQLRLHRYQTGRDSRVITALTLLKKH 125
>At3g27430.1 68416.m03428 20S proteasome beta subunit B (PBB1)
identical to 20S proteasome beta subunit PBB1 (PBB1)
GB:AAC32066 [Arabidopsis thaliana] (Genetics 149 (2),
677-692 (1998)); contains Pfam profile: PF00227
proteasome A-type and B-type;
Length = 267
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +2
Query: 68 LLPFLLTCAIASAAECENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHLRH 226
+ P + C +AA+ E T M+ S L + ++ DS+++ LTL +H
Sbjct: 76 MAPNIYCCGAGTAADTEAVTD---MVSSQLRLHRYQTGRDSRVITALTLLKKH 125
>At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family
protein Common family members: At4g18570, At4g04980,
At5g61090 [Arabidopsis thaliana]; identical to cDNA
CHUP1 for actin binding protein GI:28071264
Length = 1004
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/48 (33%), Positives = 17/48 (35%)
Frame = -2
Query: 761 PTAKHGAGRQRVXPGARXPGKTXGTLPRELPPRHGPGXAPHWTDPSHP 618
P G G+ P AR P G P PP GP P P P
Sbjct: 655 PPRSAGGGKSTNLPSARPPLPGGGPPPPPPPPGGGPPPPPGGGPPPPP 702
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,044,208
Number of Sequences: 28952
Number of extensions: 387933
Number of successful extensions: 1076
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1069
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1980143200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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