Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_F07
         (896 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    25   0.61 
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    25   0.61 
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    25   0.61 
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    25   1.1  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    25   1.1  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    25   1.1  

>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 25.4 bits (53), Expect = 0.61
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +1

Query: 355 RLWRPDVVLLN-AXGXTAGDYALRARVSNNGS 447
           +LW+PDV++ N A     G +     V +NGS
Sbjct: 84  KLWKPDVLMYNSADEGFDGTFQTNVVVKHNGS 115



 Score = 24.6 bits (51), Expect = 1.1
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 273 LQMNWIDKRLSWNAGEWG 326
           L + W D  L WN  E+G
Sbjct: 56  LNLEWNDYNLKWNESEYG 73


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 25.4 bits (53), Expect = 0.61
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +1

Query: 355 RLWRPDVVLLN-AXGXTAGDYALRARVSNNGS 447
           +LW+PDV++ N A     G +     V +NGS
Sbjct: 84  KLWKPDVLMYNSADEGFDGTFQTNVVVKHNGS 115



 Score = 24.6 bits (51), Expect = 1.1
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 273 LQMNWIDKRLSWNAGEWG 326
           L + W D  L WN  E+G
Sbjct: 56  LNLEWNDYNLKWNESEYG 73


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 25.4 bits (53), Expect = 0.61
 Identities = 19/76 (25%), Positives = 31/76 (40%)
 Frame = -3

Query: 261 SAPVDSDSRMLACLKCRVRLTTILESGGDSRSYVARSESIMRDSDVAFSHSAALAIAQVR 82
           ++ V S+S       CR     I +    ++  V+    + +DS  AF+      +AQV 
Sbjct: 53  NSEVSSNSYTPKIKSCRPFKAYIKDPLTLAQGLVSTEMLLKKDSSEAFNEFRTKILAQVH 112

Query: 81  RNGNKNNISRRHFMTT 34
              N  N + R   TT
Sbjct: 113 GTNNGTNKNMRRLSTT 128


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 273 LQMNWIDKRLSWNAGEWG 326
           L + W D  L WN  E+G
Sbjct: 56  LSLEWNDYNLKWNESEYG 73



 Score = 23.0 bits (47), Expect = 3.2
 Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +1

Query: 355 RLWRPDVVLLN-AXGXTAGDYALRARVSNNGS 447
           +LW+PDV++ N A     G +     V + GS
Sbjct: 84  KLWKPDVLMYNSADEGFDGTFQTNVVVKHGGS 115


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 273 LQMNWIDKRLSWNAGEWG 326
           L + W D  L WN  E+G
Sbjct: 56  LSLEWNDYNLKWNESEYG 73



 Score = 23.0 bits (47), Expect = 3.2
 Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +1

Query: 355 RLWRPDVVLLN-AXGXTAGDYALRARVSNNGS 447
           +LW+PDV++ N A     G +     V + GS
Sbjct: 84  KLWKPDVLMYNSADEGFDGTFQTNVVVKHGGS 115


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 273 LQMNWIDKRLSWNAGEWG 326
           L + W D  L WN  E+G
Sbjct: 56  LNLEWNDYNLKWNESEYG 73



 Score = 23.0 bits (47), Expect = 3.2
 Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +1

Query: 355 RLWRPDVVLLN-AXGXTAGDYALRARVSNNGS 447
           +LW+PDV++ N A     G +     V + GS
Sbjct: 84  KLWKPDVLMYNSADEGFDGTFQTNVVVKHGGS 115


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,074
Number of Sequences: 336
Number of extensions: 2273
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24927353
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)