Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_F07
         (896 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_1022 - 21778315-21779007                                         31   0.94 
05_07_0308 + 29115892-29116083,29116771-29116885,29116978-291170...    29   3.8  
08_02_1291 + 25930056-25930067,25930289-25930334,25930434-259305...    29   6.6  
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321...    28   8.8  
05_05_0155 + 22787658-22787930,22788029-22788096,22789600-227899...    28   8.8  

>04_03_1022 - 21778315-21779007
          Length = 230

 Score = 31.5 bits (68), Expect = 0.94
 Identities = 15/54 (27%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
 Frame = -1

Query: 755 RGPXXNVHXXRPXXXPPXPXXHXPPH-RAPXXXPRRXXQAATXHHXXRXPXXXP 597
           R P  + H   P   PP P  + PPH   P   P++       +H    P   P
Sbjct: 26  RPPCSSAHLLPPPPPPPPPPPYVPPHLLPPSPAPQQWYDHPPNYHPPHTPAPAP 79


>05_07_0308 +
           29115892-29116083,29116771-29116885,29116978-29117087,
           29118225-29118350,29118450-29118570,29118665-29118749,
           29118854-29118967,29119061-29119100,29119517-29119665,
           29120223-29120412,29121674-29122228,29123588-29123815,
           29123904-29124044,29124134-29124334,29124447-29124728
          Length = 882

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = -1

Query: 446 EPLLDTXXXXX*SPAVXPXAFSSTTSGLHKRSRGHQPSAAAPFPXVP-TQSFVDPI 282
           EP+  T       P V   +FSS +  +  RS G    +AAP P  P T S  +P+
Sbjct: 71  EPMSSTGSTQPSGPEVRSSSFSS-SENVRARSSGSSSRSAAPPPPPPQTDSATNPL 125


>08_02_1291 +
           25930056-25930067,25930289-25930334,25930434-25930546,
           25930645-25930930,25931357-25931421,25931642-25931693,
           25931774-25931883,25932611-25932641,25932853-25933004,
           25934622-25934840
          Length = 361

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 253 GGLGLTNVSMSQMQGQVDYDFGVGGRLPI 167
           GG  L    ++Q  G   Y +G GGRLP+
Sbjct: 101 GGPALPRYGIAQFPGGSGYPYGYGGRLPM 129


>11_06_0411 -
           23230580-23230795,23231407-23231862,23232142-23232195,
           23232251-23232367
          Length = 280

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +2

Query: 254 GADTGRSSNELDRQTTELERXGMGLQHLAGVL 349
           G +  R S EL+RQ  ELER G  L+   G L
Sbjct: 93  GEELERQSRELERQREELERQGRELKMKDGKL 124


>05_05_0155 +
           22787658-22787930,22788029-22788096,22789600-22789915,
           22790207-22790323
          Length = 257

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 16/54 (29%), Positives = 16/54 (29%)
 Frame = -1

Query: 734 HXXRPXXXPPXPXXHXPPHRAPXXXPRRXXQAATXHHXXRXPXXXPHATKXXXH 573
           H   P   PP    H PPH  P   P         HH    P   PH      H
Sbjct: 30  HLRHPHHHPPHHHPH-PPHHHPPHHPHPPHHPHPPHHP--HPPHHPHPPHHHPH 80


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,174,103
Number of Sequences: 37544
Number of extensions: 328845
Number of successful extensions: 997
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 990
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)