Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_F07
         (896 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37330| Best HMM Match : S-antigen (HMM E-Value=4.1e-09)             30   2.2  
SB_43395| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.9  
SB_47853| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_30491| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  

>SB_37330| Best HMM Match : S-antigen (HMM E-Value=4.1e-09)
          Length = 818

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
 Frame = -1

Query: 359 KRSRGHQPSAAAPFPXVPTQSFVDPIHLKICQYPHRWTRT--HEC*HVSNAGSG*LRFWS 186
           +RSR H+PS+        T     P+  +   +P  W+R+  H   H S + S     W 
Sbjct: 327 QRSRQHKPSSRN------TSRSRSPVRSRSPIHPRSWSRSVSHSLSHSSASRSPTPEDWD 380

Query: 185 RGETPDRTLRGASRS 141
           R  TP R+    SRS
Sbjct: 381 RSRTPSRSPTPDSRS 395


>SB_43395| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1112

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 296  FVDPIHLKICQYPHRWTRTHEC 231
            F  P H +    PH WTRT+ C
Sbjct: 958  FTSPAHEQYLPCPHAWTRTYSC 979


>SB_47853| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1853

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 224 HANIRESESTGADTGRSSNELDRQTTELER 313
           H+N + + S+G DT   +  L+R T E ER
Sbjct: 734 HSNFKNAASSGTDTSGKARTLERFTEEQER 763


>SB_30491| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1516

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -2

Query: 241 LTNVSMSQMQGQVDYDFGVGGRLPIVRCEERVDHE 137
           L+++S    +G VD  FGV  +   +R  +++D+E
Sbjct: 594 LSHISGGDKEGDVDLHFGVNSQTGAIRLNKKLDYE 628


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,921,185
Number of Sequences: 59808
Number of extensions: 319255
Number of successful extensions: 858
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 856
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2574115416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)