Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_F07
(896 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF288374-1|AAK83056.1| 502|Caenorhabditis elegans nicotinic ace... 34 0.16
AC006708-21|AAF60421.3| 502|Caenorhabditis elegans Uncoordinate... 34 0.16
Z78417-4|CAB01685.2| 531|Caenorhabditis elegans Hypothetical pr... 33 0.28
AL110479-15|CAB54361.2| 400|Caenorhabditis elegans Hypothetical... 33 0.37
X86403-1|CAA60157.1| 575|Caenorhabditis elegans nicotinic acety... 32 0.64
U23525-1|AAK71377.1| 575|Caenorhabditis elegans Acetylcholine r... 32 0.64
Z50029-2|CAA90341.3| 537|Caenorhabditis elegans Hypothetical pr... 31 0.85
Z66500-2|CAA91304.2| 500|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z67737-1|CAA91536.2| 399|Caenorhabditis elegans Hypothetical pr... 31 1.5
U39855-1|AAA81080.3| 615|Caenorhabditis elegans Hypothetical pr... 30 2.0
AF025458-3|AAB70976.1| 612|Caenorhabditis elegans Hypothetical ... 30 2.0
AC024783-1|AAY86294.1| 404|Caenorhabditis elegans Hypothetical ... 30 2.6
AC006834-2|AAF40009.1| 562|Caenorhabditis elegans Acetylcholine... 30 2.6
Z81512-7|CAD54133.1| 504|Caenorhabditis elegans Hypothetical pr... 29 4.5
AL033515-1|CAD54179.1| 504|Caenorhabditis elegans Hypothetical ... 29 4.5
AL033511-1|CAA22072.2| 504|Caenorhabditis elegans Hypothetical ... 29 4.5
AC024207-2|AAL77193.1| 425|Caenorhabditis elegans Hypothetical ... 29 4.5
AC024207-1|AAL77194.1| 428|Caenorhabditis elegans Hypothetical ... 29 4.5
AF038614-9|AAB92062.2| 445|Caenorhabditis elegans Hypothetical ... 28 7.9
>AF288374-1|AAK83056.1| 502|Caenorhabditis elegans nicotinic
acetylcholine receptoralpha subunit protein.
Length = 502
Score = 33.9 bits (74), Expect = 0.16
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +1
Query: 322 GAAALGWCPRERLWRPDVVLL-NAXGXTAGDYALRARVSNNGSVSW 456
G + + P + +W PDVVL NA G +A+++ NG+V W
Sbjct: 96 GGVEVLYVPSDTIWLPDVVLYNNADGNYQVTIMTKAKLTYNGTVEW 141
>AC006708-21|AAF60421.3| 502|Caenorhabditis elegans Uncoordinated
protein 63 protein.
Length = 502
Score = 33.9 bits (74), Expect = 0.16
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +1
Query: 322 GAAALGWCPRERLWRPDVVLL-NAXGXTAGDYALRARVSNNGSVSW 456
G + + P + +W PDVVL NA G +A+++ NG+V W
Sbjct: 96 GGVEVLYVPSDTIWLPDVVLYNNADGNYQVTIMTKAKLTYNGTVEW 141
>Z78417-4|CAB01685.2| 531|Caenorhabditis elegans Hypothetical
protein C35C5.5 protein.
Length = 531
Score = 33.1 bits (72), Expect = 0.28
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +3
Query: 273 LQMNWIDKRLSWNAGEWG 326
L+M W DK+L+WN +WG
Sbjct: 81 LEMQWYDKKLTWNPTDWG 98
Score = 28.7 bits (61), Expect = 6.0
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1
Query: 346 PRERLWRPDVVLL-NAXGXTAGDYALRARVSNNGSVSW 456
P +++W PD+VL NA G A++ ++G V W
Sbjct: 106 PSDQIWIPDIVLYNNADGEPHITITSLAKIDHHGRVVW 143
>AL110479-15|CAB54361.2| 400|Caenorhabditis elegans Hypothetical
protein Y105C5B.16 protein.
Length = 400
Score = 32.7 bits (71), Expect = 0.37
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +3
Query: 243 PSPPVRILADLQMNWIDKRLSWNAGEWGCSTWL 341
P + ++ ++ W D RLSWNA W +T +
Sbjct: 89 PQEKISVVMEIMEYWYDARLSWNASAWQNTTMI 121
>X86403-1|CAA60157.1| 575|Caenorhabditis elegans nicotinic
acetylcholine receptor protein.
Length = 575
Score = 31.9 bits (69), Expect = 0.64
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1
Query: 346 PRERLWRPDVVLL-NAXGXTAGDYALRARVSNNGSVSW 456
P +R+W PD+VL NA G + V ++G V+W
Sbjct: 138 PSDRVWLPDIVLFNNADGNYEVSFKSNVFVDHHGDVTW 175
>U23525-1|AAK71377.1| 575|Caenorhabditis elegans Acetylcholine
receptor protein 2 protein.
Length = 575
Score = 31.9 bits (69), Expect = 0.64
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1
Query: 346 PRERLWRPDVVLL-NAXGXTAGDYALRARVSNNGSVSW 456
P +R+W PD+VL NA G + V ++G V+W
Sbjct: 138 PSDRVWLPDIVLFNNADGNYEVSFKSNVFVDHHGDVTW 175
>Z50029-2|CAA90341.3| 537|Caenorhabditis elegans Hypothetical
protein ZC504.2 protein.
Length = 537
Score = 31.5 bits (68), Expect = 0.85
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +3
Query: 273 LQMNWIDKRLSWNAGEWG 326
L+M W D RL W+ G WG
Sbjct: 77 LEMQWFDYRLMWDPGRWG 94
>Z66500-2|CAA91304.2| 500|Caenorhabditis elegans Hypothetical
protein T05C12.2 protein.
Length = 500
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +1
Query: 355 RLWRPDVVLLNAXGXT-AGDYALRARVSNNGSV 450
+LWRPDV+L N+ + Y+ R VS+NG V
Sbjct: 106 KLWRPDVLLFNSVSESFDSTYSSRFIVSSNGDV 138
>Z67737-1|CAA91536.2| 399|Caenorhabditis elegans Hypothetical
protein T01H10.1 protein.
Length = 399
Score = 30.7 bits (66), Expect = 1.5
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 243 PSPPVRILADLQMNWIDKRLSWNAGEW 323
P V ++ +L W D RLSWNA ++
Sbjct: 90 PEEQVSVVLELMEYWYDPRLSWNASDY 116
>U39855-1|AAA81080.3| 615|Caenorhabditis elegans Hypothetical
protein F18G5.4 protein.
Length = 615
Score = 30.3 bits (65), Expect = 2.0
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +3
Query: 273 LQMNWIDKRLSWNAGEW 323
L +NW+D RLSWN W
Sbjct: 165 LNINWMDPRLSWNESLW 181
Score = 29.5 bits (63), Expect = 3.4
Identities = 12/41 (29%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +1
Query: 340 WCPRERLWRPDVVLLN--AXGXTAGDYALRARVSNNGSVSW 456
+ P R+W+PD++L+N A + V+++G+V+W
Sbjct: 188 YIPHARIWKPDIILVNNAIREYYASLVSTDVMVTSDGNVTW 228
>AF025458-3|AAB70976.1| 612|Caenorhabditis elegans Hypothetical
protein C01B12.3 protein.
Length = 612
Score = 30.3 bits (65), Expect = 2.0
Identities = 16/46 (34%), Positives = 28/46 (60%)
Frame = +2
Query: 167 DRESPPDSKIVVNLTLHLRHANIRESESTGADTGRSSNELDRQTTE 304
D ESP SK + ++ +R + +R S S+G+D G+S +R+ +E
Sbjct: 571 DTESPKSSK---HSSMSIRRSELRRSSSSGSDLGKSGKR-ERKKSE 612
>AC024783-1|AAY86294.1| 404|Caenorhabditis elegans Hypothetical
protein Y45G5AL.2 protein.
Length = 404
Score = 29.9 bits (64), Expect = 2.6
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +3
Query: 225 MLTFVSPSPPVRILADLQMNWIDKRLSWNAGEWG 326
++ V P L D + +W D RLSW+ ++G
Sbjct: 93 LVEVVEPEEKATFLFDYRADWYDTRLSWDPEDYG 126
>AC006834-2|AAF40009.1| 562|Caenorhabditis elegans Acetylcholine
receptor protein 6 protein.
Length = 562
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +1
Query: 346 PRERLWRPDVVLL-NAXGXTAGDYALRARVSNNGSVSW 456
P E LW PD++L NA G + VS G V+W
Sbjct: 83 PGEMLWLPDIILYNNAHGSPWVSETTQVHVSFEGRVTW 120
Score = 28.3 bits (60), Expect = 7.9
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 282 NWIDKRLSWNAGEWGCSTWLVSSGTLV 362
+W+D RLSWN E+G T + G ++
Sbjct: 61 HWLDYRLSWNPDEFGNITLMHFPGEML 87
>Z81512-7|CAD54133.1| 504|Caenorhabditis elegans Hypothetical
protein Y44A6E.1a protein.
Length = 504
Score = 29.1 bits (62), Expect = 4.5
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +1
Query: 322 GAAALGWCPRERLWRPDVVLLNAXGXTAGDYALR--ARVSNNGSV 450
G W P +++W PD+++ N A+R AR+ NG++
Sbjct: 132 GGITKTWIPLDKIWVPDIIVFNMLAHEDLLSAVRAPARIHYNGTI 176
>AL033515-1|CAD54179.1| 504|Caenorhabditis elegans Hypothetical
protein Y44A6E.1a protein.
Length = 504
Score = 29.1 bits (62), Expect = 4.5
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +1
Query: 322 GAAALGWCPRERLWRPDVVLLNAXGXTAGDYALR--ARVSNNGSV 450
G W P +++W PD+++ N A+R AR+ NG++
Sbjct: 132 GGITKTWIPLDKIWVPDIIVFNMLAHEDLLSAVRAPARIHYNGTI 176
>AL033511-1|CAA22072.2| 504|Caenorhabditis elegans Hypothetical
protein Y44A6E.1a protein.
Length = 504
Score = 29.1 bits (62), Expect = 4.5
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +1
Query: 322 GAAALGWCPRERLWRPDVVLLNAXGXTAGDYALR--ARVSNNGSV 450
G W P +++W PD+++ N A+R AR+ NG++
Sbjct: 132 GGITKTWIPLDKIWVPDIIVFNMLAHEDLLSAVRAPARIHYNGTI 176
>AC024207-2|AAL77193.1| 425|Caenorhabditis elegans Hypothetical
protein Y74E4A.1a protein.
Length = 425
Score = 29.1 bits (62), Expect = 4.5
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +3
Query: 273 LQMNWIDKRLSWNAGEW 323
L+++W D+RL WN EW
Sbjct: 107 LKLSWKDRRLRWNPEEW 123
>AC024207-1|AAL77194.1| 428|Caenorhabditis elegans Hypothetical
protein Y74E4A.1b protein.
Length = 428
Score = 29.1 bits (62), Expect = 4.5
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +3
Query: 273 LQMNWIDKRLSWNAGEW 323
L+++W D+RL WN EW
Sbjct: 107 LKLSWKDRRLRWNPEEW 123
>AF038614-9|AAB92062.2| 445|Caenorhabditis elegans Hypothetical
protein F15E6.2 protein.
Length = 445
Score = 28.3 bits (60), Expect = 7.9
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +3
Query: 255 VRILADLQMNWIDKRLSWNAGEWGCSTWL 341
V++ ++W D +SW+ +WG S WL
Sbjct: 105 VKVFGRFVLSWNDTMVSWDKEQWGLS-WL 132
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,876,488
Number of Sequences: 27780
Number of extensions: 230014
Number of successful extensions: 844
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 842
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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