Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_F07
(896 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 33 0.003
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 33 0.004
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 33 0.005
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 31 0.011
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 31 0.014
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 30 0.025
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 29 0.076
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 28 0.13
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 28 0.13
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.18
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.18
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.18
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.18
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.18
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.18
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 27 0.18
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 27 0.18
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 27 0.31
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 26 0.54
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 22 6.6
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 33.5 bits (73), Expect = 0.003
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1
Query: 346 PRERLWRPDVVLL-NAXGXTAGDYALRARVSNNGSVSW 456
P + +WRPD+VL NA G A +A + + G V W
Sbjct: 106 PSDHIWRPDIVLYNNADGNFEVTLATKATIYHQGLVEW 143
Score = 21.8 bits (44), Expect = 8.7
Identities = 6/18 (33%), Positives = 11/18 (61%)
Frame = +3
Query: 273 LQMNWIDKRLSWNAGEWG 326
++ +W D +L W E+G
Sbjct: 81 VEQSWYDYKLRWEPKEYG 98
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 33.1 bits (72), Expect = 0.004
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1
Query: 346 PRERLWRPDVVLL-NAXGXTAGDYALRARVSNNGSVSW 456
P + +WRPD+VL NA G A +A ++ G V W
Sbjct: 102 PSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGRVEW 139
Score = 22.6 bits (46), Expect = 5.0
Identities = 6/18 (33%), Positives = 12/18 (66%)
Frame = +3
Query: 273 LQMNWIDKRLSWNAGEWG 326
++ +W D +L W+ E+G
Sbjct: 77 VEQSWYDYKLKWDPKEYG 94
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 32.7 bits (71), Expect = 0.005
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +1
Query: 322 GAAALGWCPRERLWRPDVVLL-NAXGXTAGDYALRARVSNNGSVSW 456
G + + P E +W PD+VL NA G +A + G VSW
Sbjct: 103 GGVEMLYVPSENIWLPDIVLYNNADGNYEVTLMTKATLKYTGDVSW 148
Score = 23.4 bits (48), Expect = 2.9
Identities = 7/18 (38%), Positives = 11/18 (61%)
Frame = +3
Query: 273 LQMNWIDKRLSWNAGEWG 326
++ W D +L WN E+G
Sbjct: 86 VEQRWNDYKLKWNPEEYG 103
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 31.5 bits (68), Expect = 0.011
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +1
Query: 346 PRERLWRPDVVLL-NAXGXTAGDYALRARVSNNGSVSW 456
P +++W+PD+VL NA G Y + NG V W
Sbjct: 104 PPDKVWKPDIVLFNNADGNYEVRYKSNVLIYPNGDVLW 141
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 31.1 bits (67), Expect = 0.014
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 346 PRERLWRPDVVLLN-AXGXTAGDYALRARVSNNGS 447
P RLW+PDV++ N A G Y V NNG+
Sbjct: 101 PPHRLWKPDVLMYNSADEGFDGTYPTNVVVKNNGT 135
Score = 23.0 bits (47), Expect = 3.8
Identities = 6/18 (33%), Positives = 11/18 (61%)
Frame = +3
Query: 273 LQMNWIDKRLSWNAGEWG 326
L++ W D + WN ++G
Sbjct: 76 LKLEWNDVNMRWNVSDYG 93
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 30.3 bits (65), Expect = 0.025
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +1
Query: 346 PRERLWRPDVVLL-NAXGXTAGDYALRARVSNNGSVSW 456
P + +WRPD+VL NA G +A V +G V W
Sbjct: 106 PSDHIWRPDIVLYNNADGNYEVTLMTKATVYYSGLVVW 143
Score = 21.8 bits (44), Expect = 8.7
Identities = 6/18 (33%), Positives = 11/18 (61%)
Frame = +3
Query: 273 LQMNWIDKRLSWNAGEWG 326
++ +W D +L W E+G
Sbjct: 81 VEQSWYDYKLRWEPKEYG 98
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 28.7 bits (61), Expect = 0.076
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +1
Query: 346 PRERLWRPDVVLL-NAXGXTAGDYALRARVSNNGSVSW 456
P E +W PD+VL NA G +A + + G V W
Sbjct: 98 PSEHIWLPDIVLYNNADGNYEVTIMTKAILHHTGKVVW 135
Score = 22.6 bits (46), Expect = 5.0
Identities = 6/18 (33%), Positives = 11/18 (61%)
Frame = +3
Query: 273 LQMNWIDKRLSWNAGEWG 326
++ W D +L WN ++G
Sbjct: 73 VEQEWNDYKLKWNPDDYG 90
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 27.9 bits (59), Expect = 0.13
Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Frame = +1
Query: 346 PRERLWRPDVVLLNAXGXTAGDYALRAR--VSNNGSVSW 456
P R+WRPD +L N + VS+ G V W
Sbjct: 83 PYNRVWRPDTILYNNADPQYSSAVINTNVIVSHTGEVVW 121
Score = 22.6 bits (46), Expect = 5.0
Identities = 7/13 (53%), Positives = 8/13 (61%)
Frame = +3
Query: 285 WIDKRLSWNAGEW 323
W D L WNA E+
Sbjct: 62 WTDHHLKWNASEF 74
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 27.9 bits (59), Expect = 0.13
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = +1
Query: 340 WCPRERLWRPDVVLL-NAXGXTAGDYALRARVSNNGSVSW 456
+ P E +W PD+VL NA G +A + G V W
Sbjct: 96 YVPSEHIWLPDIVLYNNADGEYGVTTMTKAILHYTGKVLW 135
Score = 21.8 bits (44), Expect = 8.7
Identities = 8/23 (34%), Positives = 12/23 (52%)
Frame = +3
Query: 273 LQMNWIDKRLSWNAGEWGCSTWL 341
L+ W D + W+ E+G T L
Sbjct: 73 LEHEWQDHKFQWDPAEYGGVTEL 95
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 27.5 bits (58), Expect = 0.18
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +3
Query: 273 LQMNWIDKRLSWNAGEWG 326
L++ W+D L WN E+G
Sbjct: 39 LKLEWVDYNLQWNESEYG 56
Score = 24.6 bits (51), Expect = 1.2
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +1
Query: 355 RLWRPDVVLLN-AXGXTAGDYALRARVSNNGS 447
+LW+PD+++ N A G Y V+++GS
Sbjct: 67 KLWKPDILMYNSADEGFDGTYQTSVVVTHDGS 98
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 27.5 bits (58), Expect = 0.18
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +3
Query: 273 LQMNWIDKRLSWNAGEWG 326
L++ W+D L WN E+G
Sbjct: 39 LKLEWVDYNLQWNESEYG 56
Score = 24.6 bits (51), Expect = 1.2
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +1
Query: 355 RLWRPDVVLLN-AXGXTAGDYALRARVSNNGS 447
+LW+PD+++ N A G Y V+++GS
Sbjct: 67 KLWKPDILMYNSADEGFDGTYQTSVVVTHDGS 98
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 27.5 bits (58), Expect = 0.18
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +3
Query: 273 LQMNWIDKRLSWNAGEWG 326
L++ W+D L WN E+G
Sbjct: 39 LKLEWVDYNLQWNESEYG 56
Score = 24.6 bits (51), Expect = 1.2
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +1
Query: 355 RLWRPDVVLLN-AXGXTAGDYALRARVSNNGS 447
+LW+PD+++ N A G Y V+++GS
Sbjct: 67 KLWKPDILMYNSADEGFDGTYQTSVVVTHDGS 98
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 27.5 bits (58), Expect = 0.18
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +3
Query: 273 LQMNWIDKRLSWNAGEWG 326
L++ W+D L WN E+G
Sbjct: 39 LKLEWVDYNLQWNESEYG 56
Score = 24.6 bits (51), Expect = 1.2
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +1
Query: 355 RLWRPDVVLLN-AXGXTAGDYALRARVSNNGS 447
+LW+PD+++ N A G Y V+++GS
Sbjct: 67 KLWKPDILMYNSADEGFDGTYQTSVVVTHDGS 98
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 27.5 bits (58), Expect = 0.18
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +3
Query: 273 LQMNWIDKRLSWNAGEWG 326
L++ W+D L WN E+G
Sbjct: 39 LKLEWVDYNLQWNESEYG 56
Score = 24.6 bits (51), Expect = 1.2
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +1
Query: 355 RLWRPDVVLLN-AXGXTAGDYALRARVSNNGS 447
+LW+PD+++ N A G Y V+++GS
Sbjct: 67 KLWKPDILMYNSADEGFDGTYQTSVVVTHDGS 98
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 27.5 bits (58), Expect = 0.18
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +3
Query: 273 LQMNWIDKRLSWNAGEWG 326
L++ W+D L WN E+G
Sbjct: 39 LKLEWVDYNLQWNESEYG 56
Score = 26.6 bits (56), Expect = 0.31
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +1
Query: 355 RLWRPDVVLLN-AXGXTAGDYALRARVSNNGS 447
+LW+PD+++ N A G Y V++NGS
Sbjct: 67 KLWKPDILMYNSADEGFDGTYQTSVVVTHNGS 98
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 27.5 bits (58), Expect = 0.18
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +3
Query: 273 LQMNWIDKRLSWNAGEWG 326
L++ W+D L WN E+G
Sbjct: 107 LKLEWVDYNLQWNESEYG 124
Score = 27.1 bits (57), Expect = 0.23
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +1
Query: 355 RLWRPDVVLLN-AXGXTAGDYALRARVSNNGS 447
+LW+PD+++ N A G Y V++NGS
Sbjct: 135 KLWKPDILMYNSADEGFDGTYQTNVVVTHNGS 166
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 27.5 bits (58), Expect = 0.18
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +3
Query: 273 LQMNWIDKRLSWNAGEWG 326
L++ W+D L WN E+G
Sbjct: 107 LKLEWVDYNLQWNESEYG 124
Score = 27.1 bits (57), Expect = 0.23
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +1
Query: 355 RLWRPDVVLLN-AXGXTAGDYALRARVSNNGS 447
+LW+PD+++ N A G Y V++NGS
Sbjct: 135 KLWKPDILMYNSADEGFDGTYQTNVVVTHNGS 166
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 26.6 bits (56), Expect = 0.31
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = -1
Query: 401 VXPXAFSSTTSGLHKRSRGH-QPSAAAPFPXVPTQS 297
V P + S+ S + + G PSA AP P +P S
Sbjct: 389 VSPVSMSALVSAVRSPAGGQLPPSAGAPMPPIPNMS 424
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 25.8 bits (54), Expect = 0.54
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +1
Query: 319 NGAAALGWCPRERLWRPDVVLLNAXGXTAGDYALRARVSNNGSV 450
NG A+ C +PD++ + A G GD +V NG++
Sbjct: 17 NGTGAVVECQARGNPQPDIIWVRADGSAVGDVPGLRQVLPNGNL 60
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 22.2 bits (45), Expect = 6.6
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +1
Query: 352 ERLWRPDVVLLN 387
ER+WRPD N
Sbjct: 115 ERIWRPDTYFYN 126
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,956
Number of Sequences: 438
Number of extensions: 3120
Number of successful extensions: 49
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29025360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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