Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_F07
         (896 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g05130.1 68418.m00544 SNF2 domain-containing protein / helica...    32   0.59 
At1g35950.1 68414.m04464 replication protein-related weak simila...    29   3.2  
At5g34950.1 68418.m04124 replication protein-related weak simila...    29   5.5  
At3g52250.1 68416.m05742 myb family transcription factor contain...    29   5.5  
At2g19430.1 68415.m02267 transducin family protein / WD-40 repea...    28   7.3  

>At5g05130.1 68418.m00544 SNF2 domain-containing protein / helicase
           domain-containing protein / RING finger
           domain-containing protein similar to transcription
           factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
           contains Pfam profiles PF00271: Helicase conserved
           C-terminal domain, PF00176: SNF2 family N-terminal
           domain, PF00097: Zinc finger, C3HC4 type (RING finger)
          Length = 862

 Score = 31.9 bits (69), Expect = 0.59
 Identities = 15/69 (21%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
 Frame = -3

Query: 222 LKCRVRLTTILESGGDSRSYVARSESIM-RDSDVAFSHSAALAIAQVRRNGNKNNISRRH 46
           + C++ +   LE+    +S ++R   ++  +SD +F  S A+ + +   NG+K ++ +  
Sbjct: 126 IPCQIHVFAKLEASSTVKSTISRGGLVLISESDTSFGLSEAVVVKEQMGNGDKRSVDKIF 185

Query: 45  FMTTDLLKL 19
            +  + +KL
Sbjct: 186 KLVDENVKL 194


>At1g35950.1 68414.m04464 replication protein-related weak
           similarity to Replication Protein A 70  kDa DNA-binding
           subunit (RP-A) (RF-A) (Replication factor-A protein 1)
           (Single-stranded DNA-binding protein) (DMRPA1)
           (GI:2498844)(SP:Q24492) [Drosophila melanogaster]
          Length = 231

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 222 DMLTFVSPSPPVRILADLQMNWIDKRLSW 308
           D+ + + P+P   IL D++ N ID R+ W
Sbjct: 3   DLQSMIKPTPCTMILCDVKGNKIDARIPW 31


>At5g34950.1 68418.m04124 replication protein-related weak
           similarity to Replication Protein A 70  kDa DNA-binding
           subunit (RP-A) (RF-A) (Replication factor-A protein 1)
           (Single-stranded DNA-binding protein) (DMRPA1)
           (GI:2498844)(SP:Q24492) [Drosophila melanogaster]
          Length = 234

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 222 DMLTFVSPSPPVRILADLQMNWIDKRLSW 308
           D  + + P+P   IL D++ N ID R+ W
Sbjct: 28  DNQSMIKPTPTTMILCDVKGNKIDARIPW 56


>At3g52250.1 68416.m05742 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 1677

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 282 NWIDKRLSWNAGEWGCSTWLVSSGT 356
           N  D R+S +  EW C+TW +S+G+
Sbjct: 126 NCRDDRVSVSQKEWKCNTWEMSNGS 150


>At2g19430.1 68415.m02267 transducin family protein / WD-40 repeat
           family protein similar to WD-repeat protein 5
           (SP:Q9UGP9) [Homo sapiens]; contains 7 Trp-Asp WD-40
           repeats
          Length = 367

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +1

Query: 340 WCPRERLWRPDVVLLNAXGXTAGDYALRARVSNNGSVSWXKG 465
           W P  R+  PD  ++ +   T   ++L + VS + S  + KG
Sbjct: 33  WAPPARISNPDAFVVASSDGTLAFHSLNSLVSQSASFGYSKG 74


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,386,351
Number of Sequences: 28952
Number of extensions: 224666
Number of successful extensions: 687
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2110422216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)