Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_F06
(891 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228; Eukary... 210 3e-53
UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;... 199 7e-50
UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44; Bi... 186 7e-46
UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6; Tr... 175 1e-42
UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n... 159 1e-37
UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 ... 130 4e-29
UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured m... 90 6e-17
UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured m... 89 1e-16
UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6; Thermop... 89 1e-16
UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 86 1e-15
UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13; Euryar... 80 9e-14
UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1; ... 75 3e-12
UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofi... 74 4e-12
UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6; Euryarc... 74 4e-12
UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4; Thermoc... 73 7e-12
UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 70 9e-11
UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus N... 66 9e-10
UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5; Thermop... 66 1e-09
UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1; Staphylo... 63 8e-09
UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4; Thermop... 63 1e-08
UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1; Nanoarc... 63 1e-08
UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella... 60 7e-08
UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarcha... 59 2e-07
UniRef50_Q59LS0 Cluster: Putative uncharacterized protein; n=1; ... 40 0.064
UniRef50_Q78TB4 Cluster: 16 days embryo head cDNA, RIKEN full-le... 40 0.085
UniRef50_Q69NC6 Cluster: Putative uncharacterized protein OJ1742... 36 1.8
UniRef50_O82487 Cluster: T12H20.10 protein; n=15; Magnoliophyta|... 35 2.4
UniRef50_Q54JS8 Cluster: Putative uncharacterized protein; n=1; ... 34 4.2
UniRef50_A2YFM3 Cluster: Putative uncharacterized protein; n=3; ... 33 7.4
UniRef50_Q5Y974 Cluster: Structural polyprotein; n=13; Solenopsi... 33 9.8
>UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228;
Eukaryota|Rep: 60S ribosomal protein L3 - Homo sapiens
(Human)
Length = 403
Score = 210 bits (514), Expect = 3e-53
Identities = 90/116 (77%), Positives = 105/116 (90%)
Frame = +1
Query: 49 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 228
F P HGS+GF P+KRS RHRGKVK+FPKDDPSKPVHLTAF+GYKAGMTH+VRE DRPGS
Sbjct: 6 FSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVDRPGS 65
Query: 229 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKN 396
K+NKKE+VEAVTI+ETPPMV VG+VGY+ETP GLR TV+AEH+S++C+RRFYKN
Sbjct: 66 KVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKN 121
Score = 64.9 bits (151), Expect = 3e-09
Identities = 29/72 (40%), Positives = 42/72 (58%)
Frame = +3
Query: 636 RYCSVVRVIXXTQMKXLKXGXKKXHIMEIXXRGGTIEXKVKWGXKXLXKAYPCRFCVXRD 815
+YC V+RVI TQM+ L KK H+MEI GGT+ K+ W + L + P +D
Sbjct: 155 KYCQVIRVIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQD 214
Query: 816 EVIEWVGVXGGR 851
E+I+ +GV G+
Sbjct: 215 EMIDVIGVTKGK 226
>UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;
n=1; Caenorhabditis elegans|Rep: Putative
uncharacterized protein rpl-3 - Caenorhabditis elegans
Length = 353
Score = 199 bits (486), Expect = 7e-50
Identities = 84/116 (72%), Positives = 100/116 (86%)
Frame = +1
Query: 49 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 228
F P HG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ D+PGS
Sbjct: 6 FSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVDKPGS 65
Query: 229 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKN 396
K+NKKE+VEAVTI+ETPPMV GV GY++TP G RAL T+WAEH+SE+ RRRFY N
Sbjct: 66 KVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSN 121
>UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44;
Bilateria|Rep: 60S ribosomal protein L3-like - Homo
sapiens (Human)
Length = 407
Score = 186 bits (453), Expect = 7e-46
Identities = 80/116 (68%), Positives = 98/116 (84%)
Frame = +1
Query: 49 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 228
F P HG +GF P KRS RHRGKVK +P+DDPS+PVHLTAF+GYKAGMTH +RE RPG
Sbjct: 6 FSAPRHGHLGFLPHKRSHRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREVHRPGL 65
Query: 229 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKN 396
KI+K+E VEAVTI+ETPP+V VGVVGY+ TP GLR+ T++AEH+S++CRRRFYK+
Sbjct: 66 KISKREEVEAVTIVETPPLVVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYKD 121
Score = 66.9 bits (156), Expect = 6e-10
Identities = 33/72 (45%), Positives = 39/72 (54%)
Frame = +3
Query: 636 RYCSVVRVIXXTQMKXLKXGXKKXHIMEIXXRGGTIEXKVKWGXKXLXKAYPCRFCVXRD 815
+YC V+RVI TQMK L KK HIMEI GGT+ KV W L K P +
Sbjct: 155 KYCKVIRVIVHTQMKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLEKQVPVHSVFSQS 214
Query: 816 EVIEWVGVXGGR 851
EVI+ + V GR
Sbjct: 215 EVIDVIAVTKGR 226
>UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6;
Trypanosomatidae|Rep: Ribosomal protein L3, putative -
Trypanosoma brucei
Length = 480
Score = 175 bits (426), Expect = 1e-42
Identities = 75/116 (64%), Positives = 95/116 (81%)
Frame = +1
Query: 49 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 228
F+HP HG +GF P+KRSR+ RG+ ++FPKDDPS+ HLT+F+ YKAGMTH+VR+ DRPGS
Sbjct: 57 FEHPRHGHLGFLPRKRSRQIRGRARSFPKDDPSQKPHLTSFMVYKAGMTHIVRDVDRPGS 116
Query: 229 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKN 396
K+NKKE+VE VTI+E PPMV VG+VGY +TP G + + TVWA H S + RRRFYKN
Sbjct: 117 KVNKKEVVEPVTILEAPPMVVVGIVGYRQTPVGHKTIGTVWAHHTSVEFRRRFYKN 172
Score = 37.1 bits (82), Expect = 0.60
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Frame = +3
Query: 648 VVRVIXXTQMKXLKX---GXKKXHIMEIXXRGGTIEXKVKWGXKXLXK 782
++RV+ TQ++ L+ G KK H+ EI GGTI K++ L K
Sbjct: 210 IIRVVAHTQLRKLRNNRVGVKKAHVSEIQINGGTIAQKIELAKSLLEK 257
>UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n=2;
Rattus norvegicus|Rep: UPI0000503B42 UniRef100 entry -
Rattus norvegicus
Length = 380
Score = 159 bits (385), Expect = 1e-37
Identities = 71/117 (60%), Positives = 88/117 (75%)
Frame = +1
Query: 46 NFQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPG 225
NF P HGS+GF P+K S H GKVK FPKDD SKPVHLT F+ +KA MTH++++ DRP
Sbjct: 5 NFSAPRHGSLGFSPQKHSCWHHGKVKLFPKDDSSKPVHLTDFLVHKANMTHIIQKVDRPE 64
Query: 226 SKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKN 396
SK+NKKE+VE V I+ETPPMV +G+VGYIE P GL V+AEH+S ++ FYKN
Sbjct: 65 SKMNKKEVVEGVAIVETPPMVVMGIVGYIEIPRGLWTFKAVFAEHISGKSKKCFYKN 121
Score = 33.5 bits (73), Expect = 7.4
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +3
Query: 636 RYCSVVRVIXXTQMKXLKXGXKKXHIMEIXXRG 734
+YC V+ ++ TQM L KK H+MEI G
Sbjct: 149 KYCQVICIVAHTQMCLLSLHQKKAHLMEIQVMG 181
>UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 TAR
RNA-binding protein B) (TARBP-B).; n=1; Bos taurus|Rep:
60S ribosomal protein L3 (HIV-1 TAR RNA-binding protein
B) (TARBP-B). - Bos Taurus
Length = 340
Score = 130 bits (315), Expect = 4e-29
Identities = 61/108 (56%), Positives = 82/108 (75%), Gaps = 3/108 (2%)
Frame = +1
Query: 91 KRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKKEIVEAVTII 270
K S +H+GKV FPKD SKPV+L+AF+GY+AGMTHVVR+ DRPGSK++KKE+VE VTI+
Sbjct: 1 KCSSQHQGKVTGFPKDGSSKPVYLSAFLGYQAGMTHVVRKVDRPGSKVHKKEVVEVVTIV 60
Query: 271 ETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRR---RFYKNCSP 405
ET P + VG VG ET GL+ +V+A+H+S +C+R ++ N SP
Sbjct: 61 ETMPFMTVGTVGCTETIWGLQTFKSVFAKHISNECKRTGIKYKTNTSP 108
>UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote HF70_59C08|Rep: Ribosomal
protein L3 - uncultured marine group II euryarchaeote
HF70_59C08
Length = 338
Score = 90.2 bits (214), Expect = 6e-17
Identities = 45/99 (45%), Positives = 61/99 (61%)
Frame = +1
Query: 58 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 237
P GSMGF P+KR+ R G+VK++P+ D S V + F G+KAGMTHV+ PGS
Sbjct: 7 PKKGSMGFGPRKRANRPYGRVKSWPETD-SDEVRVQGFAGWKAGMTHVMMRDLNPGSPSA 65
Query: 238 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWA 354
E+ +AVT++E PPM + V GY TP+G + WA
Sbjct: 66 GAEVRKAVTVVEVPPMRVLAVRGYKMTPYGKQTAGEAWA 104
>UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote DeepAnt-JyKC7|Rep:
Ribosomal protein L3 - uncultured marine group II
euryarchaeote DeepAnt-JyKC7
Length = 358
Score = 89.4 bits (212), Expect = 1e-16
Identities = 42/103 (40%), Positives = 65/103 (63%)
Frame = +1
Query: 58 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 237
P GSMGF P+KR+ R G++ ++P+ + S+ + + F G+KAGMTHV+ P S
Sbjct: 7 PKRGSMGFSPRKRAIRPFGRITSWPETESSE-IRVQGFAGWKAGMTHVLMRDTNPHSTSA 65
Query: 238 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMS 366
+EI +AVT++E PPM + V GY TP+G++ +WA+ S
Sbjct: 66 GQEIRKAVTVVEVPPMKVLAVRGYHMTPYGMQTAGEIWADSSS 108
>UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6;
Thermoprotei|Rep: 50S ribosomal protein L3P - Aeropyrum
pernix
Length = 344
Score = 89.0 bits (211), Expect = 1e-16
Identities = 52/111 (46%), Positives = 67/111 (60%), Gaps = 2/111 (1%)
Frame = +1
Query: 58 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 237
P GS+GF P+KR+ R +VK +P+ D KPV L AF+GY+AGMTHV DRPG +
Sbjct: 9 PRRGSLGFSPRKRASRLVPRVKRWPEVDIGKPVPL-AFLGYRAGMTHVFMVDDRPGRPTS 67
Query: 238 KKEIVEAVTIIETPPMVCVGVVGYIETPH-GLRALLTVWAEHMSE-DCRRR 384
KEI VTI+ETPPM V Y P+ G +L WA+ E + +RR
Sbjct: 68 GKEIFVPVTIVETPPMFVAAVRLYGYDPNRGRYSLGEAWAQPPPELELQRR 118
>UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Halobacterium salinarium (Halobacterium halobium)
Length = 335
Score = 85.8 bits (203), Expect = 1e-15
Identities = 45/108 (41%), Positives = 58/108 (53%)
Frame = +1
Query: 58 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 237
P GSMGF P+KR+ + ++P DD V L F GYKAGMTHVV D+ +
Sbjct: 7 PRKGSMGFSPRKRAESEVPRFNSWPADDGE--VGLQGFAGYKAGMTHVVLVDDKANAPTE 64
Query: 238 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRR 381
E VT++ETPPM V Y +TP+G + L VWA+ E R
Sbjct: 65 GMETTVPVTVVETPPMRAAAVRLYEDTPYGKKPLTEVWADDTHESLDR 112
>UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanopyrus kandleri
Length = 361
Score = 79.8 bits (188), Expect = 9e-14
Identities = 38/100 (38%), Positives = 55/100 (55%)
Frame = +1
Query: 58 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 237
P GS+ F P+KR+ R +++++P ++ V + F GYKAGMTH + D P S
Sbjct: 12 PRRGSLAFSPRKRASRPVPRIRSWPDEER---VRVQGFAGYKAGMTHAIMIDDWPNSPTE 68
Query: 238 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAE 357
+EI VTI++ PPM + Y TP G R + WAE
Sbjct: 69 GEEISVPVTILDAPPMYVAAIRAYAPTPDGYRCVTEAWAE 108
>UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1;
Ignicoccus hospitalis KIN4/I|Rep: LSU ribosomal protein
L3P - Ignicoccus hospitalis KIN4/I
Length = 358
Score = 74.5 bits (175), Expect = 3e-12
Identities = 44/100 (44%), Positives = 57/100 (57%), Gaps = 2/100 (2%)
Frame = +1
Query: 58 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 237
P GS G P+KR+ +V+++P D KP+ AF+GYK GMTHV+ DR
Sbjct: 9 PRRGSAGLRPRKRAASIVPRVRSWPSIDEVKPL---AFLGYKVGMTHVIMIDDREHVDTA 65
Query: 238 KKEIVEAVTIIETPPMVCVG--VVGYIETPHGLRALLTVW 351
+EI VT+IETPPMV +G V GY + G AL VW
Sbjct: 66 GQEIFVPVTVIETPPMVVLGARVYGY-DPNRGRYALTEVW 104
>UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofilum
pendens Hrk 5|Rep: 50S ribosomal protein L3 -
Thermofilum pendens (strain Hrk 5)
Length = 334
Score = 74.1 bits (174), Expect = 4e-12
Identities = 39/110 (35%), Positives = 57/110 (51%)
Frame = +1
Query: 58 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 237
P GS +YP+KR+R +V+ +P++ F GYK GM HV+ S
Sbjct: 7 PRRGSRAYYPRKRARSIVARVRRWPQNREG----FLGFAGYKVGMLHVIGVEMNKNSPFY 62
Query: 238 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRF 387
+E A T+IE PP+ V V Y +TP+G + L VWA+ + +D R F
Sbjct: 63 GQERFYAATVIEVPPLKVVAVRVYEKTPYGKKTLCEVWAKDLPKDLERVF 112
>UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanococcus jannaschii
Length = 335
Score = 74.1 bits (174), Expect = 4e-12
Identities = 41/115 (35%), Positives = 67/115 (58%), Gaps = 2/115 (1%)
Frame = +1
Query: 46 NFQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPG 225
N P GS+ F P+KR++R +++++P++D V L AF YKAGM+H + D P
Sbjct: 4 NINRPRRGSLAFSPRKRAKRPVPRIRSWPEEDT---VRLQAFPVYKAGMSHAFIKEDNPK 60
Query: 226 SKINKKEIVEAVTIIETPPM-VC-VGVVGYIETPHGLRALLTVWAEHMSEDCRRR 384
S +E+ +TI+E PP+ VC + V G E + L L VWA+++ ++ R+
Sbjct: 61 SPNAGQEVFTPITILEAPPINVCAIRVYGRNERNY-LTTLTEVWADNLDKELERK 114
>UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4;
Thermococcaceae|Rep: 50S ribosomal protein L3P -
Pyrococcus furiosus
Length = 365
Score = 73.3 bits (172), Expect = 7e-12
Identities = 37/84 (44%), Positives = 52/84 (61%)
Frame = +1
Query: 58 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 237
P GS+GF P+KR++ +++++PK+ V + F GYKAGMTH++ D PG N
Sbjct: 7 PRRGSLGFSPRKRAKSIVPRIRSWPKETE---VRMLGFAGYKAGMTHILMIDDEPG-LTN 62
Query: 238 KKEIVEAVTIIETPPMVCVGVVGY 309
KEI VTIIETPP+ G+ Y
Sbjct: 63 GKEIFMPVTIIETPPLRVFGIRAY 86
>UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Uncultured methanogenic archaeon RC-I
Length = 337
Score = 69.7 bits (163), Expect = 9e-11
Identities = 35/100 (35%), Positives = 56/100 (56%), Gaps = 2/100 (2%)
Frame = +1
Query: 58 PXHGSMGFYPKKRSRRHRGKVKAFPK--DDPSKPVHLTAFIGYKAGMTHVVREPDRPGSK 231
P GS+G+ P+ R+R + K++ + + D P + F+G+KAGM+H+V DRP S
Sbjct: 7 PRRGSLGYSPRVRARSQKPKMRNWAELGDQPK----IQGFVGFKAGMSHIVMVDDRPHSA 62
Query: 232 INKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVW 351
EI VTI+E P M G+ Y ++P+G + + W
Sbjct: 63 TEGMEISVPVTIVEAPQMHVAGIRVYDDSPYGKKVIGEAW 102
>UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein L3
- Candidatus Nitrosopumilus maritimus SCM1
Length = 331
Score = 66.5 bits (155), Expect = 9e-10
Identities = 33/100 (33%), Positives = 56/100 (56%)
Frame = +1
Query: 58 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 237
P GS+ + P+ R++ +++A+PK D +P + A G+KAG +V DR
Sbjct: 9 PRRGSLAYSPRVRAKSMEARIRAWPKLDSEEP-KILAHCGFKAGCVQIVSIDDREKVPNA 67
Query: 238 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAE 357
K++V T++ TPP++ +G+ GY + GL A V+AE
Sbjct: 68 GKQLVSLGTVLVTPPVLILGIRGYSKDHDGLHAEFDVYAE 107
>UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5;
Thermoprotei|Rep: 50S ribosomal protein L3P - Sulfolobus
solfataricus
Length = 351
Score = 65.7 bits (153), Expect = 1e-09
Identities = 41/121 (33%), Positives = 59/121 (48%), Gaps = 3/121 (2%)
Frame = +1
Query: 58 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 237
P GS G P+KRS + +P+ + P L F+GYK GMTHV D P S N
Sbjct: 9 PRRGSAGLRPRKRSSELLPTPRTWPQINSQNP-KLLGFVGYKVGMTHVFMIDDWPNSPTN 67
Query: 238 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLT-VWAEHMSE--DCRRRFYKNCSPL 408
KEI VT++E PP++ + + Y G ++T W+ + D RR + S L
Sbjct: 68 GKEIYMPVTVLEVPPIIPLALRAYAIDGKGEPNVITEYWSSSSLQFLDITRRIHSISSFL 127
Query: 409 E 411
+
Sbjct: 128 K 128
>UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1;
Staphylothermus marinus F1|Rep: 50S ribosomal protein L3
- Staphylothermus marinus (strain ATCC 43588 / DSM 3639
/ F1)
Length = 395
Score = 63.3 bits (147), Expect = 8e-09
Identities = 39/120 (32%), Positives = 63/120 (52%), Gaps = 19/120 (15%)
Frame = +1
Query: 49 FQHPXHGSMGFYPKKRSRRHRGKVKAFP------------------KDDPSKPVHLTAFI 174
+ P HGS+G P+KR+ + +++++P K KPV L ++
Sbjct: 6 YSAPRHGSLGVRPRKRAAKIVPRIRSWPTQSWFDLLVEKLGDEAVNKGIAPKPV-LLGYV 64
Query: 175 GYKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPPMVCVGVVGY-IETPHGLRALLTVW 351
YKAGM+H + DRP + + KEI VT+++ PP++ +G+ GY I HGL + VW
Sbjct: 65 AYKAGMSHAIIIDDRPHTFTSGKEIAIPVTVLDAPPILILGLRGYKIHPMHGLLSFGEVW 124
>UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4;
Thermoplasmatales|Rep: 50S ribosomal protein L3P -
Thermoplasma volcanium
Length = 331
Score = 62.9 bits (146), Expect = 1e-08
Identities = 33/107 (30%), Positives = 57/107 (53%), Gaps = 1/107 (0%)
Frame = +1
Query: 55 HPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKI 234
H GSM +YP+ R++ +++++P + S PV + F G+K GMTHV R S
Sbjct: 6 HSRRGSMAYYPRVRAKSIEPRIRSWP--EISGPVKVQGFAGFKVGMTHVEMVDYRKTSVT 63
Query: 235 NKKEIVEAVTIIETPPMVCVGVVGYIETPHG-LRALLTVWAEHMSED 372
+ I VT+IE PP+ +G+ Y E G + + W +++ ++
Sbjct: 64 AGQPIFVPVTVIEVPPLDVIGIRLYDEDEEGNMVVVYEKWTQNLDKE 110
>UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1;
Nanoarchaeum equitans|Rep: 50S ribosomal protein L3P -
Nanoarchaeum equitans
Length = 321
Score = 62.9 bits (146), Expect = 1e-08
Identities = 34/112 (30%), Positives = 59/112 (52%)
Frame = +1
Query: 58 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 237
P GSMGF+P+KR+ R ++K +PK + KP+ AF YK GMTH + IN
Sbjct: 9 PRRGSMGFWPRKRASRIYPRIKTWPKIEEIKPL---AFAAYKVGMTHTI-------LNIN 58
Query: 238 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 393
+ + VT++E P ++ +G Y + L+ + +++ + + R+ K
Sbjct: 59 GERVFTPVTVLEAPELLVIGAKAYKKENGALKEISSLYFNDLPQYVFRKIPK 110
>UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella
natans|Rep: Ribosomal protein L3 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 370
Score = 60.1 bits (139), Expect = 7e-08
Identities = 34/100 (34%), Positives = 52/100 (52%)
Frame = +1
Query: 49 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 228
F+HP GS+GF PKKRS R K + + +++ F K THV+R + S
Sbjct: 6 FEHPRIGSLGFLPKKRSNRIFPSSKTYKEIIHIYYPYISQFASLKVASTHVLRICNIVSS 65
Query: 229 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTV 348
K + I++ VT++E PP+ VG+ Y + L L T+
Sbjct: 66 KSYQNPIIDEVTLMECPPIEVVGLCAYALSSGHLVKLKTI 105
>UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarchaeum
symbiosum|Rep: 50S ribosomal protein L3 - Cenarchaeum
symbiosum
Length = 328
Score = 58.8 bits (136), Expect = 2e-07
Identities = 31/108 (28%), Positives = 56/108 (51%)
Frame = +1
Query: 49 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 228
F P GS+ + P+ R+R +++ +P+ +P L A G+KAG +V DR +
Sbjct: 6 FSQPRRGSLAYSPRGRARSMEARIRGWPERQ-GEP-RLLAHAGFKAGCIQIVSIDDREHT 63
Query: 229 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSED 372
K++V T++ TPP+ +G+ GY + +G V+AE + +
Sbjct: 64 PNAGKQLVSLGTVLVTPPLHVLGMRGYSKGHYGRHVKFDVFAEDLPRE 111
>UniRef50_Q59LS0 Cluster: Putative uncharacterized protein; n=1;
Candida albicans|Rep: Putative uncharacterized protein -
Candida albicans (Yeast)
Length = 173
Score = 40.3 bits (90), Expect = 0.064
Identities = 26/77 (33%), Positives = 34/77 (44%)
Frame = -2
Query: 836 TNPLNHFISXNTESTGIRFXQXFSAPFHFXLDGTTPXXDFHNVXLLXSLF*XLHLSXXND 657
+N +NHFI F + F P +F DGTT DF V L + L L D
Sbjct: 56 SNDINHFILFENRVNRNFFFKVFFGPVNFVGDGTTVDLDFSQVSFLLRQWSLLDLGVSQD 115
Query: 656 SYNTTVXGSSFLKSFSI 606
S N +V S SF++
Sbjct: 116 SDNRSVLLDSGQFSFNL 132
>UniRef50_Q78TB4 Cluster: 16 days embryo head cDNA, RIKEN
full-length enriched library, clone:C130041A08
product:weakly similar to 60S RIBOSOMAL PROTEIN L3; n=1;
Mus musculus|Rep: 16 days embryo head cDNA, RIKEN
full-length enriched library, clone:C130041A08
product:weakly similar to 60S RIBOSOMAL PROTEIN L3 - Mus
musculus (Mouse)
Length = 109
Score = 39.9 bits (89), Expect = 0.085
Identities = 20/46 (43%), Positives = 27/46 (58%)
Frame = +1
Query: 106 HRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKK 243
HR + K FPK+D K HL F+ +A MT+ V E +R G K +K
Sbjct: 8 HRIQAKDFPKEDLPKSAHLIVFLVSRAVMTYFVWEINRSGPKWTRK 53
>UniRef50_Q69NC6 Cluster: Putative uncharacterized protein
OJ1742_G01.32; n=1; Oryza sativa (japonica
cultivar-group)|Rep: Putative uncharacterized protein
OJ1742_G01.32 - Oryza sativa subsp. japonica (Rice)
Length = 100
Score = 35.5 bits (78), Expect = 1.8
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +3
Query: 240 ERDRGGCHHHRDSSDGLCRCCWIH*DPSWTTRSVD 344
E DRG CHH+ S GLCR C + P+ T V+
Sbjct: 36 EGDRGCCHHYLTGSPGLCRRCPLRAHPAATGFEVE 70
>UniRef50_O82487 Cluster: T12H20.10 protein; n=15;
Magnoliophyta|Rep: T12H20.10 protein - Arabidopsis
thaliana (Mouse-ear cress)
Length = 358
Score = 35.1 bits (77), Expect = 2.4
Identities = 21/84 (25%), Positives = 38/84 (45%)
Frame = -1
Query: 423 KLSSFERRAVFVEATSTVFRHMLRPDSQQSA*SMRGLNVSNNTDTNHRRSLDDGDSLHDL 244
K SS + F T T R+ P A ++ ++N + T+ + L G++L+ L
Sbjct: 36 KFSSIKSSVSFSRKTLTPIRYSSSPADHSPATAVEA--ITNRSKTSLKSRLRGGETLYGL 93
Query: 243 FLVDF*TGTVRFSNHVGHTGLITD 172
FL+ F + H G+ ++ D
Sbjct: 94 FLLSFSPTLAEIAAHAGYDYVVVD 117
>UniRef50_Q54JS8 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 1205
Score = 34.3 bits (75), Expect = 4.2
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Frame = +1
Query: 91 KRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTH--VVREPDRPGSKINKKEIVEAVT 264
K +++ K+K +++ K + AFI A ++ +R DR ++N I + T
Sbjct: 19 KANKKKAAKLKKLEQNEALKGRNPKAFISQAAYASNRLTIRNLDREAKRVNLPVIDRSGT 78
Query: 265 IIETPPMVCVGVVG 306
+ETPP V + VVG
Sbjct: 79 AVETPPYV-IAVVG 91
>UniRef50_A2YFM3 Cluster: Putative uncharacterized protein; n=3;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. indica (Rice)
Length = 310
Score = 33.5 bits (73), Expect = 7.4
Identities = 13/29 (44%), Positives = 22/29 (75%)
Frame = +3
Query: 9 FSLRLSSSMSHRKFSAPRSWVYGILSQKE 95
FSL L+ S S+R+F P+SWV+G+ + ++
Sbjct: 165 FSLGLNLSTSNRQFVPPKSWVFGMAAMRK 193
>UniRef50_Q5Y974 Cluster: Structural polyprotein; n=13; Solenopsis
invicta virus 1|Rep: Structural polyprotein - Solenopsis
invicta virus 1
Length = 1137
Score = 33.1 bits (72), Expect = 9.8
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = -1
Query: 285 HRRSLDDGDSLHDLFLVDF*TGTVRFSNHVGHTGLITDKSSQMNRFARVV 136
HRR + ++ D+ LVD T++ VG GLITD +S ++ A V
Sbjct: 475 HRRDVTAARAIADMILVDERDATMQVQAEVGGQGLITDIASTVSAVAGAV 524
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 809,611,794
Number of Sequences: 1657284
Number of extensions: 15767825
Number of successful extensions: 33030
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 31951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33011
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 80342087756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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