Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_F06
         (891 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342...   196   2e-50
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327...   194   6e-50
01_05_0125 - 18382402-18382761,18382863-18383036                       29   3.8  
05_04_0324 - 20273797-20274261                                         29   5.0  

>12_01_0435 +
           3428552-3428636,3429242-3429352,3429434-3429738,
           3429821-3430230,3430323-3430556,3430934-3431378,
           3432300-3432390,3433292-3433518,3433786-3433861,
           3434009-3434134,3434221-3434384
          Length = 757

 Score =  196 bits (478), Expect = 2e-50
 Identities = 83/116 (71%), Positives = 103/116 (88%)
 Frame = +1

Query: 49  FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 228
           F+HP HGS+GF P+KRS RHRGKVK+FPKDD SKP HLT+F+GYKAGMTH+VRE ++PGS
Sbjct: 6   FEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVSKPCHLTSFVGYKAGMTHIVREVEKPGS 65

Query: 229 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKN 396
           K++KKE  EAVTIIETPP+V VG+V Y++TP GLR+L +VWA+H+SE+ RRRFYKN
Sbjct: 66  KLHKKETCEAVTIIETPPLVIVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYKN 121



 Score = 61.7 bits (143), Expect = 8e-10
 Identities = 32/77 (41%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
 Frame = +3

Query: 624 ER*SRYCSVVRVIXXTQMKXLKX-GXKKXHIMEIXXRGGTIEXKVKWGXKXLXKAYPCRF 800
           E+  +Y S+VRVI  TQ++ +K    KK H+MEI   GGTI  KV +G K   K  P   
Sbjct: 151 EKMKKYASIVRVIAHTQIRKMKGLKQKKAHLMEIQINGGTIADKVDYGYKFFEKEIPVDA 210

Query: 801 CVXRDEVIEWVGVXGGR 851
              +DE+I+ +GV  G+
Sbjct: 211 VFQKDEMIDIIGVTKGK 227



 Score = 29.5 bits (63), Expect = 3.8
 Identities = 18/34 (52%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = +1

Query: 781 KRIPVDSVFX--EMK*LSGLVXXGEGXXGVVXRW 876
           K IPVD+VF   EM  + G V  G+G  GVV RW
Sbjct: 204 KEIPVDAVFQKDEMIDIIG-VTKGKGYEGVVTRW 236


>11_01_0427 +
           3274817-3274901,3275587-3275697,3275979-3276283,
           3276406-3276815,3276942-3277200
          Length = 389

 Score =  194 bits (474), Expect = 6e-50
 Identities = 82/116 (70%), Positives = 103/116 (88%)
 Frame = +1

Query: 49  FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 228
           F+HP HGS+GF P+KRS RHRGKVK+FPKDD +KP HLT+F+GYKAGMTH+VRE ++PGS
Sbjct: 6   FEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVNKPCHLTSFVGYKAGMTHIVREVEKPGS 65

Query: 229 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKN 396
           K++KKE  EAVTIIETPP+V VG+V Y++TP GLR+L +VWA+H+SE+ RRRFYKN
Sbjct: 66  KLHKKETCEAVTIIETPPIVVVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYKN 121



 Score = 62.1 bits (144), Expect = 6e-10
 Identities = 33/77 (42%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
 Frame = +3

Query: 624 ER*SRYCSVVRVIXXTQMKXLKX-GXKKXHIMEIXXRGGTIEXKVKWGXKXLXKAYPCRF 800
           E+  +Y SVVRVI  TQ++ +K    KK H+MEI   GGTI  KV +G K   K  P   
Sbjct: 151 EKMKKYASVVRVIVHTQIRKMKGLKQKKAHLMEIQINGGTIADKVDYGYKFFEKEIPVDA 210

Query: 801 CVXRDEVIEWVGVXGGR 851
              +DE+I+ +GV  G+
Sbjct: 211 VFQKDEMIDIIGVTKGK 227



 Score = 29.5 bits (63), Expect = 3.8
 Identities = 18/34 (52%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = +1

Query: 781 KRIPVDSVFX--EMK*LSGLVXXGEGXXGVVXRW 876
           K IPVD+VF   EM  + G V  G+G  GVV RW
Sbjct: 204 KEIPVDAVFQKDEMIDIIG-VTKGKGYEGVVTRW 236


>01_05_0125 - 18382402-18382761,18382863-18383036
          Length = 177

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -3

Query: 409 REESSFCRSDVDSLQTYAPPRQSTERVVHEGSQCIQQHRHKPSE 278
           R+  S    ++ +L    PPR ST R+V E   C+ + R + +E
Sbjct: 38  RQTMSRLYDELGALLPNLPPRASTTRIVEEAIACVGELRARTAE 81


>05_04_0324 - 20273797-20274261
          Length = 154

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
 Frame = +1

Query: 127 FPKDDPSKPVHLTAFIGYKAGMTHVVRE--PDRPGSKINKKEIVEAVTIIETPPMVCVGV 300
           FP D+P K VH+    G  + +T ++ E  P +    +N     EA   +  P   CVGV
Sbjct: 60  FPPDNPQKFVHVHRVFG-ASNVTKLLNELHPYQREDAVNSL-AYEADMRLRDPVYGCVGV 117

Query: 301 VGYIETPHGLRAL 339
           +  ++  H LR L
Sbjct: 118 ISVLQ--HQLRQL 128


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,150,452
Number of Sequences: 37544
Number of extensions: 446961
Number of successful extensions: 945
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 944
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)