Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_F06
         (891 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34)         200   2e-51
SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0)               199   3e-51
SB_23052| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.9  
SB_14298| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  

>SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34)
          Length = 347

 Score =  200 bits (487), Expect = 2e-51
 Identities = 86/123 (69%), Positives = 104/123 (84%)
 Frame = +1

Query: 28  PACRTENFQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVR 207
           P      F+ P HGS+GF P+KR +RHRGKVK+FPKDD + P HLTAFIG+KAGMTH++R
Sbjct: 46  PKMSHRKFEAPRHGSLGFLPRKRCKRHRGKVKSFPKDDNTLPPHLTAFIGFKAGMTHILR 105

Query: 208 EPDRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRF 387
           E ++PGSK+NKKE VEAVTIIETPPM+ VGVVGYIETP G+R L T+WAEH+SE+C+RRF
Sbjct: 106 EVEKPGSKLNKKEKVEAVTIIETPPMMVVGVVGYIETPRGMRVLKTIWAEHLSEECKRRF 165

Query: 388 YKN 396
           YKN
Sbjct: 166 YKN 168



 Score = 28.7 bits (61), Expect = 6.7
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = +3

Query: 21  LSSSMSHRKFSAPRSWVYGILSQK 92
           L   MSHRKF APR    G L +K
Sbjct: 44  LEPKMSHRKFEAPRHGSLGFLPRK 67


>SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0)
          Length = 338

 Score =  199 bits (485), Expect = 3e-51
 Identities = 85/116 (73%), Positives = 103/116 (88%)
 Frame = +1

Query: 49  FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 228
           F+ P HGS+GF P+KR +RHRGKVK+FPKDD + P HLTAFIG+KAGMTH++RE ++PGS
Sbjct: 5   FEAPRHGSLGFLPRKRCKRHRGKVKSFPKDDNTLPPHLTAFIGFKAGMTHILREVEKPGS 64

Query: 229 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKN 396
           K+NKKE VEAVTIIETPPM+ VGVVGYIETP G+R L T+WAEH+SE+C+RRFYKN
Sbjct: 65  KLNKKEKVEAVTIIETPPMMVVGVVGYIETPRGMRVLKTIWAEHLSEECKRRFYKN 120



 Score = 59.7 bits (138), Expect = 3e-09
 Identities = 32/72 (44%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
 Frame = +3

Query: 636 RYCSVVRVIXXTQMKXLKXGXKKXHIMEIXXRGG-TIEXKVKWGXKXLXKAYPCRFCVXR 812
           +YC V+RVI  TQ K LK   KK HIMEI   GG  +  KV W  + L    P R     
Sbjct: 154 KYCKVIRVICHTQQKLLKMRQKKAHIMEIQVNGGKDVAEKVDWCRERLENPAPVRKVFSP 213

Query: 813 DEVIEWVGVXGG 848
           DE+I+ +GV  G
Sbjct: 214 DEMIDVIGVTKG 225


>SB_23052| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 479

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = +1

Query: 28  PACRTENFQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPV 156
           P C T+  QHP   S+ F  KK +  ++G  K++ K  P+KPV
Sbjct: 191 PVCDTDGQQHPNLCSLHFQGKKLA--YKGFCKSYCK-SPTKPV 230


>SB_14298| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 427

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -3

Query: 427 NKALIFREESSFCRSDVDSLQTYAP-PRQSTER 332
           N A+I +    +C  D+   Q YAP  RQ++ R
Sbjct: 392 NDAVILKRRECYCEKDLSKTQLYAPSDRQASNR 424


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,289,816
Number of Sequences: 59808
Number of extensions: 507228
Number of successful extensions: 1061
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1060
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2550281014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)