Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_F06
         (891 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identi...   201   6e-52
At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identi...   192   3e-49
At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identi...   192   3e-49
At4g10750.1 68417.m01755 HpcH/HpaI aldolase family protein simil...    35   0.063
At1g29195.1 68414.m03572 expressed protein                             30   1.8  

>At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identical
           to ribosomal protein GI:806279 from [Arabidopsis
           thaliana]
          Length = 390

 Score =  201 bits (490), Expect = 6e-52
 Identities = 85/116 (73%), Positives = 104/116 (89%)
 Frame = +1

Query: 49  FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 228
           F+HP HGS+GF P+KR+ RHRGKVKAFPKDDP+KP  LT+F+GYKAGMTH+VR+ ++PGS
Sbjct: 6   FEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPTKPCRLTSFLGYKAGMTHIVRDVEKPGS 65

Query: 229 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKN 396
           K++KKE  EAVTIIETPPMV VGVVGY++TP GLR+L TVWA+H+SE+ RRRFYKN
Sbjct: 66  KLHKKETCEAVTIIETPPMVVVGVVGYVKTPRGLRSLCTVWAQHLSEELRRRFYKN 121



 Score = 54.8 bits (126), Expect = 7e-08
 Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
 Frame = +3

Query: 624 ER*SRYCSVVRVIXXTQMKXLKX-GXKKXHIMEIXXRGGTIEXKVKWGXKXLXKAYPCRF 800
           E+  +YCSV+RV+  TQ++ +K    KK H+ EI   GG I  KV +      K  P   
Sbjct: 151 EKMKKYCSVIRVLAHTQIRKMKGLKQKKAHLNEIQINGGDIAKKVDYACSLFEKQVPVDA 210

Query: 801 CVXRDEVIEWVGVXGGR 851
              +DE+I+ +GV  G+
Sbjct: 211 IFQKDEMIDIIGVTKGK 227



 Score = 29.9 bits (64), Expect = 2.4
 Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
 Frame = +1

Query: 772 IWXKRIPVDSVFX--EMK*LSGLVXXGEGXXGVVXRW 876
           ++ K++PVD++F   EM  + G V  G+G  GVV RW
Sbjct: 201 LFEKQVPVDAIFQKDEMIDIIG-VTKGKGYEGVVTRW 236


>At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identical
           to ribosomal protein GI:166858 from [Arabidopsis
           thaliana]
          Length = 389

 Score =  192 bits (467), Expect = 3e-49
 Identities = 83/116 (71%), Positives = 100/116 (86%)
 Frame = +1

Query: 49  FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 228
           F+HP HGS+GF P+KR+ RHRGKVKAFPKDD +KP   TAF+GYKAGMTH+VRE ++PGS
Sbjct: 6   FEHPRHGSLGFLPRKRANRHRGKVKAFPKDDQTKPCKFTAFMGYKAGMTHIVREVEKPGS 65

Query: 229 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKN 396
           K++KKE  EAVTIIETP MV VGVV Y++TP GLR+L TVWA+H+SE+ RRRFYKN
Sbjct: 66  KLHKKETCEAVTIIETPAMVVVGVVAYVKTPRGLRSLNTVWAQHLSEEVRRRFYKN 121



 Score = 55.2 bits (127), Expect = 6e-08
 Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
 Frame = +3

Query: 624 ER*SRYCSVVRVIXXTQMKXLKX-GXKKXHIMEIXXRGGTIEXKVKWGXKXLXKAYPCRF 800
           E+  +Y +V+RV+  TQ++ +K    KK H+MEI   GGTI  KV +      K  P   
Sbjct: 151 EKMKKYATVIRVLAHTQIRKMKGLKQKKAHMMEIQINGGTIAQKVDFAYSFFEKQIPIEA 210

Query: 801 CVXRDEVIEWVGVXGGR 851
              +DE+I+ +GV  G+
Sbjct: 211 VFQKDEMIDIIGVTKGK 227



 Score = 28.3 bits (60), Expect = 7.2
 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +1

Query: 763 AEXIWXKRIPVDSVFX--EMK*LSGLVXXGEGXXGVVXRW 876
           A   + K+IP+++VF   EM  + G V  G+G  GVV RW
Sbjct: 198 AYSFFEKQIPIEAVFQKDEMIDIIG-VTKGKGYEGVVTRW 236


>At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identical
           to ribosomal protein GI:166858 from [Arabidopsis
           thaliana]
          Length = 389

 Score =  192 bits (467), Expect = 3e-49
 Identities = 83/116 (71%), Positives = 100/116 (86%)
 Frame = +1

Query: 49  FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 228
           F+HP HGS+GF P+KR+ RHRGKVKAFPKDD +KP   TAF+GYKAGMTH+VRE ++PGS
Sbjct: 6   FEHPRHGSLGFLPRKRANRHRGKVKAFPKDDQTKPCKFTAFMGYKAGMTHIVREVEKPGS 65

Query: 229 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKN 396
           K++KKE  EAVTIIETP MV VGVV Y++TP GLR+L TVWA+H+SE+ RRRFYKN
Sbjct: 66  KLHKKETCEAVTIIETPAMVVVGVVAYVKTPRGLRSLNTVWAQHLSEEVRRRFYKN 121



 Score = 55.2 bits (127), Expect = 6e-08
 Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
 Frame = +3

Query: 624 ER*SRYCSVVRVIXXTQMKXLKX-GXKKXHIMEIXXRGGTIEXKVKWGXKXLXKAYPCRF 800
           E+  +Y +V+RV+  TQ++ +K    KK H+MEI   GGTI  KV +      K  P   
Sbjct: 151 EKMKKYATVIRVLAHTQIRKMKGLKQKKAHMMEIQINGGTIAQKVDFAYSFFEKQIPIEA 210

Query: 801 CVXRDEVIEWVGVXGGR 851
              +DE+I+ +GV  G+
Sbjct: 211 VFQKDEMIDIIGVTKGK 227



 Score = 28.3 bits (60), Expect = 7.2
 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +1

Query: 763 AEXIWXKRIPVDSVFX--EMK*LSGLVXXGEGXXGVVXRW 876
           A   + K+IP+++VF   EM  + G V  G+G  GVV RW
Sbjct: 198 AYSFFEKQIPIEAVFQKDEMIDIIG-VTKGKGYEGVVTRW 236


>At4g10750.1 68417.m01755 HpcH/HpaI aldolase family protein similar
           to 2,4-dihydroxydec-2-ene-1,10-dioic acid aldolase
           [Sphingopyxis macrogoltabida] GI:23330203; contains Pfam
           profile PF03328: HpcH/HpaI aldolase family
          Length = 358

 Score = 35.1 bits (77), Expect = 0.063
 Identities = 21/84 (25%), Positives = 38/84 (45%)
 Frame = -1

Query: 423 KLSSFERRAVFVEATSTVFRHMLRPDSQQSA*SMRGLNVSNNTDTNHRRSLDDGDSLHDL 244
           K SS +    F   T T  R+   P     A ++    ++N + T+ +  L  G++L+ L
Sbjct: 36  KFSSIKSSVSFSRKTLTPIRYSSSPADHSPATAVEA--ITNRSKTSLKSRLRGGETLYGL 93

Query: 243 FLVDF*TGTVRFSNHVGHTGLITD 172
           FL+ F       + H G+  ++ D
Sbjct: 94  FLLSFSPTLAEIAAHAGYDYVVVD 117


>At1g29195.1 68414.m03572 expressed protein
          Length = 193

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = +1

Query: 160 LTAFIGYKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPP 282
           +TA    KA   HV+++P  P S  ++++++ A  I+  PP
Sbjct: 37  ITASEIMKAHPKHVLKKPSSPTSDHDERDVISATKIVIVPP 77


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,751,733
Number of Sequences: 28952
Number of extensions: 358311
Number of successful extensions: 823
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2090971320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)