Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_F04
         (850 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0116 - 26595570-26596607,26596964-26598353,26599386-265999...    32   0.50 
03_05_0934 - 28935728-28935859,28936000-28936122,28936172-289362...    29   4.7  
06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764           29   6.2  
06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,890...    28   8.2  

>01_06_0116 -
           26595570-26596607,26596964-26598353,26599386-26599923,
           26600562-26601453
          Length = 1285

 Score = 32.3 bits (70), Expect = 0.50
 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = -1

Query: 553 PPQSNSPXGSVLEPDHAGVLNG-DERFRHVT--TXHAWNETPCARRYYRPRTASAQ 395
           PP +    GS  +   +G L+   ER RH +  T HA  E P   R  RPRT+S +
Sbjct: 450 PPSAREQRGSADKSSGSGRLDALVERMRHGSKLTDHAKREIPYDERNIRPRTSSGR 505


>03_05_0934 -
           28935728-28935859,28936000-28936122,28936172-28936284,
           28936363-28936430,28936517-28936600,28936937-28936980,
           28937061-28937204,28937518-28937582,28937722-28937814,
           28938132-28938262,28938375-28938394,28938904-28938987,
           28939157-28939330,28940106-28940195,28940293-28940364,
           28941318-28941365,28941458-28941570,28942786-28942849,
           28942943-28943016,28943162-28943201
          Length = 591

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = -1

Query: 373 ESSGFSATIARNDLPLMLHLSCLLTMPD*SQAQXGSSFPADSPKPVP 233
           + +GFS TI R+D  ++  L      P       G+  PA  P PVP
Sbjct: 301 DMAGFSITIMRSDENILQRLDAPTKAPAWPVGSEGNRPPAKIPVPVP 347


>06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764
          Length = 640

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -1

Query: 466 TTXHAWNETPCARRYY 419
           TT  AW ETPCA R++
Sbjct: 560 TTTEAWVETPCAHRFH 575


>06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,
            8905437-8905690,8905785-8908799,8908889-8909001,
            8909975-8910164,8910399-8910512,8910591-8910698,
            8910941-8911073,8911206-8911408,8911626-8911826
          Length = 1889

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +1

Query: 166  DAHEWINEIPTVPIYYLAKPQPRERAWENQRGKKTLXELDS 288
            D  EW N  PT+   ++ + +PRE     Q+ K  +  L+S
Sbjct: 1403 DEGEWYNNFPTIDENHVQRNKPREEQIFQQKLKPAIFILNS 1443


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,304,767
Number of Sequences: 37544
Number of extensions: 298022
Number of successful extensions: 771
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)