Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_F02
(1059 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0490 + 22672241-22674679 34 0.22
02_04_0271 + 21445113-21445865,21446727-21446788,21446927-214470... 32 0.88
11_01_0333 + 2490132-2491007 31 2.0
07_03_1691 - 28726307-28726323,28726588-28726953,28727483-287275... 31 2.0
05_01_0141 - 937428-937717,938483-938705 31 2.0
01_05_0433 - 22094784-22095659 31 2.0
02_04_0180 + 20696258-20698398,20698691-20698871,20698998-20699060 30 2.7
02_02_0307 - 8809724-8811589,8811681-8811762,8812130-8812242,881... 30 2.7
01_03_0005 + 11568545-11569119,11569179-11569191 30 2.7
08_02_1204 - 25267546-25268219,25268319-25268452,25269567-252696... 30 3.6
02_02_0029 + 6204557-6204734,6205105-6205207,6205970-6206108 30 3.6
01_01_0083 + 631196-631675 29 4.7
07_01_0439 + 3333654-3334217 29 6.2
06_03_0082 + 16363742-16364632 29 6.2
04_03_0243 - 13271384-13272865,13272987-13273248,13274617-13276067 29 6.2
09_02_0495 + 9880714-9881196 29 8.2
06_03_0729 + 23927656-23927661,23927774-23927923,23928316-239285... 29 8.2
05_03_0665 - 16774043-16774522 29 8.2
03_06_0145 - 31973924-31975837 29 8.2
04_04_0887 + 29095087-29096166 24 9.5
>01_05_0490 + 22672241-22674679
Length = 812
Score = 33.9 bits (74), Expect = 0.22
Identities = 14/40 (35%), Positives = 16/40 (40%)
Frame = -3
Query: 973 PPPPPPXXXXXXFFFFXXXXGGEKXXGGGXXXXXPPPPPP 854
PPPPPP F+ G + PPPPPP
Sbjct: 607 PPPPPPPPPSSIFYNLFKKGGSKSRRIHSVAPPQPPPPPP 646
>02_04_0271 +
21445113-21445865,21446727-21446788,21446927-21447027,
21447165-21447248,21448054-21448058,21448193-21448267,
21448339-21448416,21448896-21448952,21449351-21449421,
21449529-21449628,21449758-21449862,21450004-21450066,
21450144-21450266,21450371-21450514,21450598-21450672
Length = 631
Score = 31.9 bits (69), Expect = 0.88
Identities = 15/39 (38%), Positives = 16/39 (41%)
Frame = +2
Query: 857 GGGGGXXXXXPPPPXFFPPXXXXKKKKXXXXXXGGGGGG 973
G GGG PP P F P + GGGGGG
Sbjct: 166 GDGGGVAVHVPPGPPFHPNLNVVRVAGGGGGGGGGGGGG 204
>11_01_0333 + 2490132-2491007
Length = 291
Score = 30.7 bits (66), Expect = 2.0
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +1
Query: 859 GGGGXXXXXPPPPXXFPPP 915
G GG PPPP FPPP
Sbjct: 190 GAGGKENRPPPPPPSFPPP 208
>07_03_1691 -
28726307-28726323,28726588-28726953,28727483-28727567,
28728255-28728387,28729793-28730328
Length = 378
Score = 30.7 bits (66), Expect = 2.0
Identities = 13/21 (61%), Positives = 13/21 (61%)
Frame = +1
Query: 856 GGGGGXXXXXPPPPXXFPPPP 918
GGGGG PPPP PPPP
Sbjct: 34 GGGGGGAGPTPPPP---PPPP 51
>05_01_0141 - 937428-937717,938483-938705
Length = 170
Score = 30.7 bits (66), Expect = 2.0
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +1
Query: 856 GGGGGXXXXXPPPPXXFPPPP 918
GGGGG PP +PPPP
Sbjct: 23 GGGGGHGYPYPPQQGYYPPPP 43
>01_05_0433 - 22094784-22095659
Length = 291
Score = 30.7 bits (66), Expect = 2.0
Identities = 14/28 (50%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = +1
Query: 856 GGGGGXXXXXPPP--PXXFPPPPXXXKK 933
GGGGG PPP P PPPP K
Sbjct: 33 GGGGGGGAARPPPMVPGRVPPPPMYRPK 60
>02_04_0180 + 20696258-20698398,20698691-20698871,20698998-20699060
Length = 794
Score = 30.3 bits (65), Expect = 2.7
Identities = 16/40 (40%), Positives = 16/40 (40%)
Frame = -3
Query: 973 PPPPPPXXXXXXFFFFXXXXGGEKXXGGGXXXXXPPPPPP 854
PPPPPP F GG G PPPPPP
Sbjct: 11 PPPPPPPP-------FGRGGGGAGYPRGHKQLYAPPPPPP 43
>02_02_0307 -
8809724-8811589,8811681-8811762,8812130-8812242,
8812361-8812492,8812681-8812864,8813002-8813135,
8813552-8813656,8813738-8813839,8813930-8814022,
8814136-8814456,8814595-8814696,8814791-8814853,
8815213-8815708,8815964-8816124,8816213-8816743,
8817077-8817118,8817203-8817334,8817639-8817703,
8817858-8818169,8818262-8818334,8818425-8818517,
8819440-8819501,8819740-8819809
Length = 1777
Score = 30.3 bits (65), Expect = 2.7
Identities = 15/39 (38%), Positives = 15/39 (38%)
Frame = -2
Query: 971 PPPPPXXXXXXXFFFXXXGGGGKXXGGGGXXXXXPPPPP 855
PPPPP GGGG GGG PPP
Sbjct: 146 PPPPPASPDAAKTPGSPAGGGGGVGAGGGGGEEPMYPPP 184
>01_03_0005 + 11568545-11569119,11569179-11569191
Length = 195
Score = 30.3 bits (65), Expect = 2.7
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -2
Query: 917 GGGGKXXGGGGXXXXXPPPPP 855
GGGG GGGG PPPP
Sbjct: 123 GGGGWQQGGGGGGAYPTPPPP 143
Score = 29.5 bits (63), Expect = 4.7
Identities = 19/54 (35%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
Frame = -2
Query: 971 PPPP---PXXXXXXXFFFXXXGGGGKXXGGGGXXXXXPPPPPXXXXXXXXFXGG 819
PPPP P + GGGG GGGG PPPP GG
Sbjct: 58 PPPPVVTPTPQCPPPPSYPSGGGGG---GGGGTVMYTSPPPPYSGGGGGSSTGG 108
Score = 28.7 bits (61), Expect = 8.2
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +3
Query: 855 GGGGGGXXXXXPPPXXFSP 911
GGGGGG PPP F P
Sbjct: 130 GGGGGGAYPTPPPPNPFLP 148
Score = 28.7 bits (61), Expect = 8.2
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +1
Query: 856 GGGGGXXXXXPPPPXXFPP 912
GGGGG PPPP F P
Sbjct: 130 GGGGGGAYPTPPPPNPFLP 148
>08_02_1204 -
25267546-25268219,25268319-25268452,25269567-25269661,
25270289-25270304,25270635-25270684,25270960-25271331
Length = 446
Score = 29.9 bits (64), Expect = 3.6
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -2
Query: 917 GGGGKXXGGGGXXXXXPPPPP 855
GGGGK G G PPPPP
Sbjct: 80 GGGGKNKGKGVAAAAPPPPPP 100
>02_02_0029 + 6204557-6204734,6205105-6205207,6205970-6206108
Length = 139
Score = 29.9 bits (64), Expect = 3.6
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = +2
Query: 887 PPPPXFFPPXXXXKKKKXXXXXXGGGGGG 973
PPPP FFPP GGGG G
Sbjct: 37 PPPPPFFPPQWAPPVAGGGGPFAGGGGYG 65
>01_01_0083 + 631196-631675
Length = 159
Score = 29.5 bits (63), Expect = 4.7
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = -2
Query: 968 PPPPXXXXXXXFFFXXXGGGGKXXGGGGXXXXXPPPP 858
PPP ++ GGG GGGG PPPP
Sbjct: 78 PPPQGGGGGYIPYYQPPAGGG--GGGGGFNYPAPPPP 112
>07_01_0439 + 3333654-3334217
Length = 187
Score = 29.1 bits (62), Expect = 6.2
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = +1
Query: 886 PPPPXXFPPPPXXXKKKXXXXXXXGGGGG 972
PPPP PPP KK GGGGG
Sbjct: 35 PPPP---PPPASRPPKKPRVVASGGGGGG 60
>06_03_0082 + 16363742-16364632
Length = 296
Score = 29.1 bits (62), Expect = 6.2
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -3
Query: 913 GGEKXXGGGXXXXXPPPPPP 854
GG GGG PPPPPP
Sbjct: 157 GGGDQFGGGEERPPPPPPPP 176
>04_03_0243 - 13271384-13272865,13272987-13273248,13274617-13276067
Length = 1064
Score = 29.1 bits (62), Expect = 6.2
Identities = 13/35 (37%), Positives = 13/35 (37%)
Frame = -1
Query: 966 PPPPXXXXXXFFFXXXXXGGKXXGGGGXXXXXPPP 862
PPPP F GG GGGG P P
Sbjct: 233 PPPPAIPPHFFLDPSIGVGGNGGGGGGGFMLWPAP 267
>09_02_0495 + 9880714-9881196
Length = 160
Score = 28.7 bits (61), Expect = 8.2
Identities = 15/39 (38%), Positives = 15/39 (38%)
Frame = -2
Query: 971 PPPPPXXXXXXXFFFXXXGGGGKXXGGGGXXXXXPPPPP 855
PPPPP GGG GG PPPPP
Sbjct: 51 PPPPPAGSSSSS-----SSGGGDGGAGGLFGGTYPPPPP 84
>06_03_0729 +
23927656-23927661,23927774-23927923,23928316-23928567,
23929072-23929209,23931213-23932730
Length = 687
Score = 28.7 bits (61), Expect = 8.2
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = +1
Query: 886 PPPPXXFPPPPXXXKKKXXXXXXXGGGGG 972
P PP PPPP GGGGG
Sbjct: 208 PSPPPPSPPPPPPSPAAHRRCSSSGGGGG 236
>05_03_0665 - 16774043-16774522
Length = 159
Score = 28.7 bits (61), Expect = 8.2
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = +1
Query: 886 PPPPXXFPPPPXXXKKKXXXXXXXGGGGG 972
PPPP PPP + GGGGG
Sbjct: 76 PPPPRLALPPPPGRRDGYLGGGGAGGGGG 104
>03_06_0145 - 31973924-31975837
Length = 637
Score = 28.7 bits (61), Expect = 8.2
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +2
Query: 857 GGGGGXXXXXPPPPXFF 907
GGGGG PPPP F+
Sbjct: 56 GGGGGVDGGAPPPPLFY 72
>04_04_0887 + 29095087-29096166
Length = 359
Score = 24.2 bits (50), Expect(2) = 9.5
Identities = 11/38 (28%), Positives = 13/38 (34%)
Frame = -3
Query: 973 PPPPPPXXXXXXFFFFXXXXGGEKXXGGGXXXXXPPPP 860
PPPPPP GG++ PPP
Sbjct: 136 PPPPPPLPLRPVVLHRAVDAGGKRSNKEDDAKFSSPPP 173
Score = 22.6 bits (46), Expect(2) = 9.5
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = -3
Query: 982 FXXPPPPPP 956
F PPPPPP
Sbjct: 130 FSPPPPPPP 138
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,308,806
Number of Sequences: 37544
Number of extensions: 645828
Number of successful extensions: 11545
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9585
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3141165724
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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