Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_F02
         (1059 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   2.5  
SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)                   30   2.7  
SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  

>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 550

 Score = 25.4 bits (53), Expect(2) = 2.5
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +1

Query: 889 PPPXXFPPPP 918
           PPP  FPPPP
Sbjct: 477 PPPRGFPPPP 486



 Score = 23.4 bits (48), Expect(2) = 2.5
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +1

Query: 865 GGXXXXXPPPPXXFPPP 915
           GG     PPP   +PPP
Sbjct: 463 GGMRGMPPPPMGMYPPP 479


>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
          Length = 514

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 18/65 (27%), Positives = 19/65 (29%)
 Frame = +1

Query: 724 PPPXXKKKXKXTPPPFXF*KKXXXKKXXXXXXPPXKXXXXXXXXGGGGGXXXXXPPPPXX 903
           PPP   +     PPP                 PP          GG        PPPP  
Sbjct: 315 PPPPPARMGTAPPPPPPSRSSQRPPPPSRGAPPPPSMGMAPPPVGGAA--PPPPPPPPVG 372

Query: 904 FPPPP 918
            PPPP
Sbjct: 373 GPPPP 377


>SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1000

 Score = 29.5 bits (63), Expect = 4.8
 Identities = 18/65 (27%), Positives = 18/65 (27%)
 Frame = +1

Query: 724  PPPXXKKKXKXTPPPFXF*KKXXXKKXXXXXXPPXKXXXXXXXXGGGGGXXXXXPPPPXX 903
            PPP         PPP                 PP            GGG     PPP   
Sbjct: 921  PPPPPPGGNAPLPPPPPGGSAPSQPPPPGGNAPPPPPPPGGSAPPPGGGAPPLPPPPGGS 980

Query: 904  FPPPP 918
             PPPP
Sbjct: 981  APPPP 985



 Score = 28.7 bits (61), Expect = 8.3
 Identities = 20/75 (26%), Positives = 21/75 (28%), Gaps = 4/75 (5%)
 Frame = +1

Query: 724  PPPXXKKKXKXTPPPFXF*KKXXXKKXXXXXXPPXKXXXXXXXXGGGGGXXXXXP----P 891
            PPP         PPP                 PP          GGG       P    P
Sbjct: 923  PPPPGGNAPLPPPPPGGSAPSQPPPPGGNAPPPPPPPGGSAPPPGGGAPPLPPPPGGSAP 982

Query: 892  PPXXFPPPPXXXKKK 936
            PP   PPPP    +K
Sbjct: 983  PPPPPPPPPPPPMRK 997


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,776,574
Number of Sequences: 59808
Number of extensions: 276881
Number of successful extensions: 2735
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2234
length of database: 16,821,457
effective HSP length: 83
effective length of database: 11,857,393
effective search space used: 3189638717
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)