Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_F02
         (1059 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g57070.1 68418.m07124 hydroxyproline-rich glycoprotein family...    33   0.32 
At1g72790.1 68414.m08415 hydroxyproline-rich glycoprotein family...    32   0.74 
At1g62440.1 68414.m07044 leucine-rich repeat family protein / ex...    29   5.2  
At1g61080.1 68414.m06877 proline-rich family protein                   24   7.3  
At4g16790.1 68417.m02536 hydroxyproline-rich glycoprotein family...    24   7.7  

>At5g57070.1 68418.m07124 hydroxyproline-rich glycoprotein family
           protein Common family members: At5g26070, At5g19800,
           At1g72790 [Arabidopsis thaliana]
          Length = 575

 Score = 33.1 bits (72), Expect = 0.32
 Identities = 15/40 (37%), Positives = 16/40 (40%)
 Frame = -3

Query: 973 PPPPPPXXXXXXFFFFXXXXGGEKXXGGGXXXXXPPPPPP 854
           PPPPPP        F+     G K          PPPPPP
Sbjct: 389 PPPPPPPLRSSQSVFYGLFKKGVKSNKKIHSVPAPPPPPP 428



 Score = 31.5 bits (68), Expect = 0.97
 Identities = 14/40 (35%), Positives = 16/40 (40%)
 Frame = -3

Query: 973 PPPPPPXXXXXXFFFFXXXXGGEKXXGGGXXXXXPPPPPP 854
           PPPPPP       F+     G +           PPPPPP
Sbjct: 390 PPPPPPLRSSQSVFYGLFKKGVKSNKKIHSVPAPPPPPPP 429


>At1g72790.1 68414.m08415 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 561

 Score = 31.9 bits (69), Expect = 0.74
 Identities = 14/39 (35%), Positives = 14/39 (35%)
 Frame = -3

Query: 973 PPPPPPXXXXXXFFFFXXXXGGEKXXGGGXXXXXPPPPP 857
           PPPPPP         F    G  K          PPPPP
Sbjct: 365 PPPPPPPPPPFFQGLFSSKKGKSKKNNSNPPPPPPPPPP 403



 Score = 30.7 bits (66), Expect = 1.7
 Identities = 15/43 (34%), Positives = 17/43 (39%)
 Frame = -3

Query: 982 FXXPPPPPPXXXXXXFFFFXXXXGGEKXXGGGXXXXXPPPPPP 854
           +  PPPPPP        FF      +K          PPPPPP
Sbjct: 363 YSPPPPPPPPPP-----FFQGLFSSKKGKSKKNNSNPPPPPPP 400


>At1g62440.1 68414.m07044 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 826

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 19/67 (28%), Positives = 20/67 (29%), Gaps = 2/67 (2%)
 Frame = +1

Query: 724 PPPXXKKKX--KXTPPPFXF*KKXXXKKXXXXXXPPXKXXXXXXXXGGGGGXXXXXPPPP 897
           PPP  K     + TPPP         K       PP                    PPPP
Sbjct: 472 PPPSSKMSPSFRATPPPPSSKMSPSVKAYPPPPPPPEYEPSPPPPSSEMSPSVRAYPPPP 531

Query: 898 XXFPPPP 918
              PPPP
Sbjct: 532 PLSPPPP 538


>At1g61080.1 68414.m06877 proline-rich family protein 
          Length = 907

 Score = 24.2 bits (50), Expect(2) = 7.3
 Identities = 12/40 (30%), Positives = 12/40 (30%)
 Frame = -3

Query: 973 PPPPPPXXXXXXFFFFXXXXGGEKXXGGGXXXXXPPPPPP 854
           PPPPPP                            PPPPPP
Sbjct: 420 PPPPPPPLSFIKTASLPLPSPPPTPPIADIAISMPPPPPP 459



 Score = 22.6 bits (46), Expect(2) = 7.3
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -3

Query: 982 FXXPPPPPP 956
           F  PPPPPP
Sbjct: 415 FPPPPPPPP 423


>At4g16790.1 68417.m02536 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 473

 Score = 24.2 bits (50), Expect(2) = 7.7
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -3

Query: 904 KXXGGGXXXXXPPPPPP 854
           K  GG      PPPPPP
Sbjct: 321 KFAGGEFHPPPPPPPPP 337



 Score = 22.6 bits (46), Expect(2) = 7.7
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = -3

Query: 985 FFXXPPPPPPXXXXXXFFF 929
           F   PPPPPP       F+
Sbjct: 278 FHPSPPPPPPPPPPLPAFY 296


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,913,738
Number of Sequences: 28952
Number of extensions: 314993
Number of successful extensions: 4690
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3954
length of database: 12,070,560
effective HSP length: 82
effective length of database: 9,696,496
effective search space used: 2618053920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)