Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_F01
         (904 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0658 - 20366559-20367562,20367745-20367937                       30   2.9  
11_06_0477 + 24057677-24059099,24059556-24060448,24060456-240605...    29   3.8  
02_04_0060 - 19345316-19345453,19345718-19345849,19345937-193460...    29   3.8  
02_05_0040 + 25341418-25341810                                         29   5.1  
12_02_0954 - 24757417-24758214                                         29   6.7  
08_02_1448 - 27168389-27172021                                         29   6.7  
03_02_0487 + 8821543-8821866,8821958-8822335,8822928-8823020,882...    29   6.7  
01_05_0141 - 18532695-18532709,18533255-18533365,18533585-185336...    29   6.7  

>07_03_0658 - 20366559-20367562,20367745-20367937
          Length = 398

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 18/63 (28%), Positives = 25/63 (39%)
 Frame = -3

Query: 338 VVVGSRHRMRMILRQHGFGQCVEQRPLVPEVPVKRRLLNPQPFRQFACRQTVYADLVQQV 159
           V+ G+ H + M L +HG    V  + L+P        L    FRQ       + DL   V
Sbjct: 251 VIPGTEHALNMRLTEHGLDGHVSIKDLIPLAAANADELLSDAFRQLGLAGVEWNDLFWVV 310

Query: 158 QGG 150
             G
Sbjct: 311 HPG 313


>11_06_0477 +
           24057677-24059099,24059556-24060448,24060456-24060578,
           24060995-24061036
          Length = 826

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -3

Query: 548 KTTXQCLXYNTTHYRDHFVQESWVRVS 468
           KTT     YN+T  R+HF   +WV VS
Sbjct: 203 KTTLARKIYNSTRIRNHFDTTAWVTVS 229


>02_04_0060 -
           19345316-19345453,19345718-19345849,19345937-19346005,
           19346453-19346551,19346702-19346786,19346890-19346990,
           19347294-19347362,19347635-19347675,19348343-19348458,
           19348546-19348702,19349266-19349474,19349811-19349914,
           19350234-19350381,19350463-19350761,19350844-19351377
          Length = 766

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 19/77 (24%), Positives = 31/77 (40%)
 Frame = +2

Query: 350 SDRECPQLQAGAARLPPAQWHHVLELQVAAALEYPSRGPSLRVPSFLVQSGPYSESYYXL 529
           +DR       G ++    Q     +LQ+A AL   S   +   P+FL  +   ++ ++  
Sbjct: 107 ADRPAGSSGGGGSKSWAQQAEEAYQLQLALALRLCSEASTAPDPNFLDSAVAAADDHHRD 166

Query: 530 GTGPSFLQRRDWENXXL 580
              P  L  R W N  L
Sbjct: 167 APSPQSLSHRFWVNGSL 183


>02_05_0040 + 25341418-25341810
          Length = 130

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = -2

Query: 393 RRAAPA*SCGHSRSEMSASRRRLSAPNAYDSPP 295
           RRAAP   CG S+   S  +RR  AP    S P
Sbjct: 74  RRAAPRRRCGGSKRRCSGPQRRRGAPRRRCSGP 106


>12_02_0954 - 24757417-24758214
          Length = 265

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = -3

Query: 449 TLERPRPAARAHGAIVLAVGEQRLPEAAG---IPDQK*APVVVGSRH 318
           T +RPRP+  A  A+  A+       A+G      Q+ AP VV S+H
Sbjct: 100 TRKRPRPSRPARAAVAAAIAAAAAASASGSQIAAQQQQAPPVVMSQH 146


>08_02_1448 - 27168389-27172021
          Length = 1210

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -3

Query: 548 KTTXQCLXYNTTHYRDHFVQESWVRVS 468
           KTT   + YN T  RDHF  + W  VS
Sbjct: 204 KTTLAKMVYNDTRVRDHFQLKMWHCVS 230


>03_02_0487 +
           8821543-8821866,8821958-8822335,8822928-8823020,
           8823613-8824236
          Length = 472

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = +2

Query: 392 LPPAQWHHVLELQVAAALEYPSRGPSLRVPSFLVQSGPYSESYYXLGTGPSFLQR 556
           LPP+      E +  +A   P+R P +R+P+  V+ GP   +   +    S + R
Sbjct: 417 LPPSDLKDSKEDKDVSAAVKPARPPPIRIPAVAVRVGPSQVAAVNMDDSDSLIAR 471


>01_05_0141 -
           18532695-18532709,18533255-18533365,18533585-18533617,
           18534011-18534140,18534219-18535660,18535990-18536358
          Length = 699

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 548 KTTXQCLXYNTTHYRDHFVQESWVRVS 468
           KTT   + YN +  R HF    W+ VS
Sbjct: 211 KTTIAQMVYNDSRVRKHFEHSGWIHVS 237


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,663,425
Number of Sequences: 37544
Number of extensions: 384857
Number of successful extensions: 1157
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1156
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)